mRNA_H-paniculata_contig15472.3202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15472.3202.1
Unique NamemRNA_H-paniculata_contig15472.3202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: D8LKT1_ECTSI (Dual specificity protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT1_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.140e-34
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 RRMEEQQTGEVEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLDSRSAAPAGPPPGTVLHSSLV 222
            +R  +QQ GE+EGK+SCPNKACGARLGSLKWTGAQCSCGSW+TPAIQF +KNLD+R     GPPPGTV+H SL+
Sbjct:   94 KRWMKQQAGEMEGKLSCPNKACGARLGSLKWTGAQCSCGSWITPAIQFPRKNLDARPRVSTGPPPGTVVHPSLL 167
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BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: A0A7S1XM93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM93_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.310e-15
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   31 VEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLDSRSAAPAGPPP 195
            VEG+I CPN+ C +R+GSL W+GAQCSCG+W+TPA Q     +D+++     PPP
Sbjct:   62 VEGRIDCPNERCRSRIGSLSWSGAQCSCGTWITPAFQIVLSKVDAKARRRRAPPP 116
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BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: A0A836C897_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C897_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.530e-15
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   28 EVEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLDSR 168
            ++EGKI CP K C AR+G+ KWTG+QCSCG+W+TPAIQ  K  +D +
Sbjct:    6 DLEGKICCPGKHCSARVGTYKWTGSQCSCGTWITPAIQIPKSKVDEK 52
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BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: A0A7S1TTA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTA1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.900e-13
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   31 VEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQF 144
            VEG+I CPN+ C +R+GSL W+GAQCSCG+W+TPA Q 
Sbjct:   62 VEGRIDCPNERCRSRIGSLSWSGAQCSCGTWITPAFQI 99
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BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: W4G7N2_9STRA (C2H2-type domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7N2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.630e-13
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   31 VEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLD 162
             EGK+ CP   C ARLGS  W+G+QCSCG+WVTP++QF K  +D
Sbjct:   70 AEGKLLCPVAKCNARLGSFGWSGSQCSCGTWVTPSVQFTKSRVD 113
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BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: A0A485L5N9_9STRA (Aste57867_16448 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5N9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.070e-13
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   31 VEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLD 162
             +GKI CP   C +RLGS  W+G+QCSCG+W+TP+IQF K  +D
Sbjct:   69 ADGKIFCPVAKCNSRLGSFNWSGSQCSCGTWITPSIQFTKSRVD 112
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BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: F2UG78_SALR5 (Protein-tyrosine-phosphatase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UG78_SALR5)

HSP 1 Score: 70.9 bits (172), Expect = 9.120e-13
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    7 MEEQQTGEVEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLDSRSAAPA 183
            M E   G VEGKI+CP   C  RLGS  W+GAQCSCG+W+TPA Q  K  +D   AAPA
Sbjct:  245 MNEVVDGVVEGKITCPK--CQYRLGSFNWSGAQCSCGAWITPAFQVHKNRVDIGIAAPA 301
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BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: A0A7S3LIA7_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIA7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.280e-13
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   28 EVEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLDSR 168
            EVEGKI CPN  C A+ G+  W+GAQCSCG+W+ PAIQ  K  +D R
Sbjct:  152 EVEGKIVCPNHRCAAKFGNYAWSGAQCSCGTWICPAIQVPKSKVDKR 198
[Close]
BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: W7TK79_9STRA (Dual specificity protein phosphatase 12 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK79_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.120e-12
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   31 VEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLD 162
            +EGK+ CPN  C ARLGS  W+G QCSCGSWV PA+Q     +D
Sbjct:  101 IEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVD 144
[Close]
BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Match: A0A024UKQ3_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKQ3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.550e-12
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   31 VEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKNLD 162
             EGK+ CP   C +RLGS  W+G+QCSCG+WVTP++QF K  +D
Sbjct:  104 AEGKLFCPVAKCNSRLGSFGWSGSQCSCGTWVTPSVQFTKSRVD 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15472.3202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKT1_ECTSI2.140e-3474.32Dual specificity protein phosphatase n=1 Tax=Ectoc... [more]
A0A7S1XM93_9STRA1.310e-1552.73Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A836C897_9STRA1.530e-1559.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1TTA1_9STRA4.900e-1365.79Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W4G7N2_9STRA5.630e-1359.09C2H2-type domain-containing protein n=3 Tax=Aphano... [more]
A0A485L5N9_9STRA9.070e-1356.82Aste57867_16448 protein n=1 Tax=Aphanomyces stella... [more]
F2UG78_SALR59.120e-1357.63Protein-tyrosine-phosphatase n=1 Tax=Salpingoeca r... [more]
A0A7S3LIA7_9STRA9.280e-1359.57Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
W7TK79_9STRA1.120e-1259.09Dual specificity protein phosphatase 12 n=2 Tax=Na... [more]
A0A024UKQ3_9STRA3.550e-1256.82C2H2-type domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15472contigH-paniculata_contig15472:196..1316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.2e-26
Seed eggNOG ortholog2880.D8LKT1
KEGG koko:K09054,ko:K14165,ko:K14819
KEGG Pathwayko04141,ko05010,map04141,map05010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
Ec32 ortholog descriptionDual specificity protein phosphatase
Ec32 orthologEc-11_005420.1
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03000,ko03009
Exons2
Model size225
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15472.3202.1prot_H-paniculata_contig15472.3202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15472 202..1316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929238.1392472-UTR-H-paniculata_contig15472:195..2011622929238.1392472-UTR-H-paniculata_contig15472:195..201Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15472 196..201 +
1691480782.7221112-UTR-H-paniculata_contig15472:195..2011691480782.7221112-UTR-H-paniculata_contig15472:195..201Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15472 196..201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929238.1726296-CDS-H-paniculata_contig15472:201..3071622929238.1726296-CDS-H-paniculata_contig15472:201..307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15472 202..307 +
1691480782.73461-CDS-H-paniculata_contig15472:201..3071691480782.73461-CDS-H-paniculata_contig15472:201..307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15472 202..307 +
1622929238.1926284-CDS-H-paniculata_contig15472:1203..13161622929238.1926284-CDS-H-paniculata_contig15472:1203..1316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15472 1204..1316 +
1691480782.744125-CDS-H-paniculata_contig15472:1203..13161691480782.744125-CDS-H-paniculata_contig15472:1203..1316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15472 1204..1316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15472.3202.1

>prot_H-paniculata_contig15472.3202.1 ID=prot_H-paniculata_contig15472.3202.1|Name=mRNA_H-paniculata_contig15472.3202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MEEQQTGEVEGKISCPNKACGARLGSLKWTGAQCSCGSWVTPAIQFAKKN
LDSRSAAPAGPPPGTVLHSSLVS
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mRNA from alignment at H-paniculata_contig15472:196..1316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15472.3202.1 ID=mRNA_H-paniculata_contig15472.3202.1|Name=mRNA_H-paniculata_contig15472.3202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1121bp|location=Sequence derived from alignment at H-paniculata_contig15472:196..1316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGGATGGAAGAGCAACAGACCGGCGAGGTTGAGGGCAAGATATCCTG
CCCTAACAAGGCGTGCGGAGCGCGTTTGGGGTCTCTCAAGTGGACGGGCG
CACAATGCTCATGTAAGAACCAGGCGAGGTTTGCCACGAAAATTTTCGAT
CGTAACTCGTTTTCATAGACCCGATCTTTATTTAATGGTCGAGAGACAAG
AGGGGCGGGCGGACATGGTTGGCGACAGTATACAAAAATATAATTGTTGC
AATGTCGAGCTGGAGCTTAGCCGTCTAGCCTTTATTTGTCCATTATGGGA
GTGAACGAATGAATAGCTCTACTGTATTTAGTGAAAGTGAAGGACAGGTT
GCTGTCGAACAACACCCAAACTTGCCCTCCCCATTTTTGGTTGGTTTACC
TTAATTAATACGGCATATTATCCGTAACGTGTTTTAGCATATTTTTCTTG
TTGGGATTATCCACAAATTTCGGATCGTTCTGCTGCAGTAGCCTCTACAA
GGACAAGCCTGTACGCTATTTGCGTTGCTGTTTTTTCATGCAAATTTTCC
AGCCGAAGTCATTTTGTGTTAGGATGGCGGTAAAGATGATCGACCGTCTT
TTCCCCCATCCGCCCCCCCCCCGCCCCCCCGAGTCATGTTTGGTGTCGTT
CCTGGTGGCTTTTGGACATGGTGTTTTCTCCTTTTGATATATTTTTCGTA
TGGTGTCTTCACTTCTCTTGGCGATTTGCAACTTTTTTCTTCTCGCTGTC
GTAGATACCGTTTTTCATTAGTGGAAAATGACTGTTCGGTTCATGGTGGT
CTCACCAATGTACTAATTGCACAGACTCGAAAATCTTGCGCACCGACAAC
CGCGGTGTTCGTGTTGTGTTGTTTCCCGTAATCGTTTTTGCACCACTCTT
ATGTTTTGCCTCCGCCCTTTATACATGTTGTGGATTGTCCCCCTCCACCC
CTCCCCCCGGTACGTACGCCCACCTGGTCGCCCTATCCCTACCCGCCCCA
TCGCCCAGGTGGCTCGTGGGTTACACCTGCTATCCAGTTCGCCAAGAAAA
ATTTAGATTCAAGATCGGCGGCTCCCGCAGGACCCCCCCCTGGAACAGTT
TTACATTCTTCCCTTGTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig15472:196..1316+

>mRNA_H-paniculata_contig15472.3202.1 ID=mRNA_H-paniculata_contig15472.3202.1|Name=mRNA_H-paniculata_contig15472.3202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig15472:196..1316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGAGCAACAGACCGGCGAGGTTGAGGGCAAGATATCCTGCCCTAA
CAAGGCGTGCGGAGCGCGTTTGGGGTCTCTCAAGTGGACGGGCGCACAAT
GCTCATATGGAAGAGCAACAGACCGGCGAGGTTGAGGGCAAGATATCCTG
CCCTAACAAGGCGTGCGGAGCGCGTTTGGGGTCTCTCAAGTGGACGGGCG
CACAATGCTCATGTGGCTCGTGGGTTACACCTGCTATCCAGTTCGCCAAG
AAAAATTTAGATTCAAGATCGGCGGCTCCCGCAGGACCCCCCCCTGGAAC
AGTTTTACATTCTTCCCTTGTTTCCGTGGCTCGTGGGTTACACCTGCTAT
CCAGTTCGCCAAGAAAAATTTAGATTCAAGATCGGCGGCTCCCGCAGGAC
CCCCCCCTGGAACAGTTTTACATTCTTCCCTTGTTTCC
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