mRNA_H-paniculata_contig1547.3199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1547.3199.1
Unique NamemRNA_H-paniculata_contig1547.3199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1547.3199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1547contigH-paniculata_contig1547:1658..2163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size494
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1547.3199.1prot_H-paniculata_contig1547.3199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1547 1701..2111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.4970424-UTR-H-paniculata_contig1547:1657..17001622929237.4970424-UTR-H-paniculata_contig1547:1657..1700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1547 1658..1700 +
1691480782.47373-UTR-H-paniculata_contig1547:1657..17001691480782.47373-UTR-H-paniculata_contig1547:1657..1700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1547 1658..1700 +
1622929237.5461621-UTR-H-paniculata_contig1547:2111..21631622929237.5461621-UTR-H-paniculata_contig1547:2111..2163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1547 2112..2163 +
1691480782.4961576-UTR-H-paniculata_contig1547:2111..21631691480782.4961576-UTR-H-paniculata_contig1547:2111..2163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1547 2112..2163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.5144553-CDS-H-paniculata_contig1547:1700..19581622929237.5144553-CDS-H-paniculata_contig1547:1700..1958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 1701..1958 +
1691480782.481563-CDS-H-paniculata_contig1547:1700..19581691480782.481563-CDS-H-paniculata_contig1547:1700..1958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 1701..1958 +
1622929237.530105-CDS-H-paniculata_contig1547:1970..21111622929237.530105-CDS-H-paniculata_contig1547:1970..2111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 1971..2111 +
1691480782.4888427-CDS-H-paniculata_contig1547:1970..21111691480782.4888427-CDS-H-paniculata_contig1547:1970..2111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 1971..2111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1547.3199.1

>prot_H-paniculata_contig1547.3199.1 ID=prot_H-paniculata_contig1547.3199.1|Name=mRNA_H-paniculata_contig1547.3199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MITRDPRVQCYRFVSQSMRLDKGTHSPTSKQILCFTPLTNIDLEYFSMLH
SCSCAGHRPQQCYTVFCTMLYLQYLLCRLQMKRVWRRCFTEMIVQFRCSS
QHPCSQRHASLQYHPSPNNHCRGLPACTSSPF*
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mRNA from alignment at H-paniculata_contig1547:1658..2163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1547.3199.1 ID=mRNA_H-paniculata_contig1547.3199.1|Name=mRNA_H-paniculata_contig1547.3199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=506bp|location=Sequence derived from alignment at H-paniculata_contig1547:1658..2163+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGCTTCCCCAACGCGTGGAAGCATTCTTAATCCGTCAGGGATGATAA
CTCGCGATCCCCGGGTCCAGTGCTATCGTTTCGTGTCTCAATCAATGCGT
CTGGACAAGGGCACCCATTCCCCAACAAGCAAACAAATATTGTGTTTCAC
TCCTCTTACAAACATCGATCTTGAGTATTTCAGTATGTTACACTCTTGCT
CTTGTGCTGGACACCGCCCCCAGCAGTGCTATACTGTGTTCTGTACAATG
CTGTACCTGCAATACTTGCTGTGCCGTTTGCAGATGAAAAGGGTGTGGAG
GGAATAATTGCTCCGTTGTTTTACAGAAATGATCGTTCAGTTTCGCTGTA
GTTCACAGCATCCATGTTCCCAGCGACATGCATCCCTTCAATACCACCCC
AGCCCCAACAATCACTGCCGAGGCTTGCCTGCCTGTACCTCTTCCCCATT
CTAAGTTTCCCTGTGCGTTGATGCTTCATCGTTGTCTCGCGCGTGAAGAT
AGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1547:1658..2163+

>mRNA_H-paniculata_contig1547.3199.1 ID=mRNA_H-paniculata_contig1547.3199.1|Name=mRNA_H-paniculata_contig1547.3199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig1547:1658..2163+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAACTCGCGATCCCCGGGTCCAGTGCTATCGTTTCGTGTCTCAATC
AATGCGTCTGGACAAGGGCACCCATTCCCCAACAAGCAAACAAATATTGT
GTTTCACTCCTCTTACAAACATCGATCTTGAGTATTTCAGTATGTTACAC
TCTTGCTCTTGTGCTGGACACCGCCCCCAGCAGTGCTATACTGTGTTCTG
TACAATGCTGTACCTGCAATACTTGCTGTGCCGTTTGCAGATGAAAAGGG
TGTGGAGGATGATAACTCGCGATCCCCGGGTCCAGTGCTATCGTTTCGTG
TCTCAATCAATGCGTCTGGACAAGGGCACCCATTCCCCAACAAGCAAACA
AATATTGTGTTTCACTCCTCTTACAAACATCGATCTTGAGTATTTCAGTA
TGTTACACTCTTGCTCTTGTGCTGGACACCGCCCCCAGCAGTGCTATACT
GTGTTCTGTACAATGCTGTACCTGCAATACTTGCTGTGCCGTTTGCAGAT
GAAAAGGGTGTGGAGGCGTTGTTTTACAGAAATGATCGTTCAGTTTCGCT
GTAGTTCACAGCATCCATGTTCCCAGCGACATGCATCCCTTCAATACCAC
CCCAGCCCCAACAATCACTGCCGAGGCTTGCCTGCCTGTACCTCTTCCCC
ATTCTAACGTTGTTTTACAGAAATGATCGTTCAGTTTCGCTGTAGTTCAC
AGCATCCATGTTCCCAGCGACATGCATCCCTTCAATACCACCCCAGCCCC
AACAATCACTGCCGAGGCTTGCCTGCCTGTACCTCTTCCCCATTCTAA
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