mRNA_H-paniculata_contig15452.3191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI) HSP 1 Score: 213 bits (541), Expect = 8.970e-57 Identity = 121/203 (59.61%), Postives = 132/203 (65.02%), Query Frame = 1
Query: 1 QAIKGITATYRMTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARRGSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHLLDVVEATSEEPS 609
QA+KGITATYRMTNKPPP RPSPFVPNVLRALREFD RWG A+ GN ER GG GWK RVV++VC RYLEIVSELLLTVRQMENTLNKRRVTARRGSRAG DQGPSDKDKIMMQLR DV EFG+EAA+LGVD++S + LL+VVEA + S
Sbjct: 769 QAVKGITATYRMTNKPPPQRPSPFVPNVLRALREFDSRWGASAS----------GN--------------EREGGGG------------------------AGWKDRVVMSVCSRYLEIVSELLLTVRQMENTLNKRRVTARRGSRAGAGDQGPSDKDKIMMQLRFDVREFGKEAARLGVDVSSFPPYEGLLEVVEAKDADAS 923
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: A0A7S2UYW1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYW1_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.250e-23 Identity = 72/195 (36.92%), Postives = 95/195 (48.72%), Query Frame = 1
Query: 1 QAIKGITATYRMTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARRGSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHLLDVV 585
QA++GITATYRMTNKP P +PSPFVPN+L+ LR+F Q WG +RV A GWK +V+ V ERY+E+V ELL TV+QME++L KRR +R+ G SD DKI++QL ++ EFG E G+ L + LL+ V
Sbjct: 249 QAVRGITATYRMTNKPAPTKPSPFVPNILKPLRDFSQEWG------------------------------DRVPEQA------------------------AGWKHQVLNIVTERYVEVVLELLGTVKQMEDSLKKRRGASRQSK------GGLSDADKILLQLLFNIREFGHELETFGLKLEDNDSYQKLLEQV 383
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: A0A7S2C6S5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C6S5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 7.640e-20 Identity = 74/205 (36.10%), Postives = 94/205 (45.85%), Query Frame = 1
Query: 4 AIKGITATYRMTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARRGSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHLLDVVEATSEEPSTGA 618
A+KG+TATYRMTNKP P +PS FV N+L+ LR+F WG +RV G W+ VV+ V ERYL + ELL TV+QME L KR++ S+A G G SD DKI++QL LDV FG GVD T+ + + LL V A +E GA
Sbjct: 111 AVKGVTATYRMTNKPAPTQPSTFVVNILKPLRDFVHAWG------------------------------DRVPGSIMNQ----------------------EWEGSVVVLVIERYLSTIMELLGTVKQMEEALAKRKIK----SKAKGNKGGLSDADKILLQLLLDVRSFGDTLETHGVDHTTNEEYVKLLAEV-APAERFLAGA 258
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: A0A7S1FPS6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FPS6_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 4.860e-15 Identity = 64/195 (32.82%), Postives = 84/195 (43.08%), Query Frame = 1
Query: 4 AIKGITATYRMTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARRGSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHLLDVVE 588
A+KG+ ATYRMTN+PPP +PSPFV +LR L EFD+ +G P + GE GWK VV V +RY V EL+ TVRQME L KR+V +R G +D +K+ +QL LD EF GVD + L ++V+
Sbjct: 569 AVKGVAATYRMTNRPPPTQPSPFVVTILRPLLEFDRMFG----------------------GRCPPQLGE-------------------------------GWKIAVVQTVSDRYSASVEELMATVRQMEEALKKRKVR----NRPVGGQSSMADGEKVRLQLLLDYKEFSAVVESAGVDRDQVEGLKRLKELVK 706
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: C1N3K6_MICPC (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3K6_MICPC) HSP 1 Score: 84.7 bits (208), Expect = 1.150e-13 Identity = 65/202 (32.18%), Postives = 88/202 (43.56%), Query Frame = 1
Query: 7 IKGITATYRMTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNK----RRVTARRGS---------RAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHL 573
+KGITAT+RMTNKP P R S FVPN+L R F + + SK + ++ A A G VC +Y + SELL TV++ E +LNK + A+ G+ +AG A QGP+D +KI+ Q+ LDV EFG + A +GVD S F L
Sbjct: 614 LKGITATFRMTNKPTPTRHSHFVPNILAPARTFLESPSTTSLSKQTRR--------ALACAVADG--------------------------------------------VCAKYSALASELLATVKKTEASLNKLKDRKAAAAKEGAGASXXATTTKAGSAQQGPTDAEKIVAQVTLDVREFGAQLAAMGVDPASRDAFKEL 763
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: A0A2G2Y1W2_CAPAN (Conserved oligomeric Golgi complex subunit 2 n=6 Tax=Capsicum TaxID=4071 RepID=A0A2G2Y1W2_CAPAN) HSP 1 Score: 83.2 bits (204), Expect = 3.480e-13 Identity = 66/206 (32.04%), Postives = 94/206 (45.63%), Query Frame = 1
Query: 7 IKGITATYRMTNKPPPHRPSPFVPNVLRALREF--DQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARR--GSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHLLDVVEATSEEPST 612
+KGITATYRMTNKP P R SP+V VLR L+EF +R C T++ ++ Q VL + +RY ++VSEL+ R+ E++L K R+ A+R G+ + +D SD DKI MQL LD+ E+ R + LG+D S + L V A +E +T
Sbjct: 590 LKGITATYRMTNKPLPVRHSPYVSGVLRPLKEFLEGERAATCLTNEMRNEL-----------------------------------------------------LQGAVLEITQRYNDLVSELVSMSRRTESSLQKLRLGAQRRAGASSDVSDHNLSDTDKICMQLFLDIQEYARSLSLLGLDAASLPPYQSLWQCV-APAERQNT 741
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: UPI002008F5CC (conserved oligomeric Golgi complex subunit 2 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002008F5CC) HSP 1 Score: 81.6 bits (200), Expect = 1.010e-12 Identity = 69/204 (33.82%), Postives = 93/204 (45.59%), Query Frame = 1
Query: 7 IKGITATYRMTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARR--GSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHLLDVVEATSEEPST 612
IKGITAT+RMTNKP P R SP+V VLR L+ F +G A+ + E E +G+ S+ + RY E+ S+L+ R+ E +L K R+ A+R G+ + +D SD DKI MQL LD+ E+GR A LGVD TS + L V A SE +T
Sbjct: 521 IKGITATFRMTNKPLPVRHSPYVSGVLRPLKLF-----------------LEGKQAATYLTT------EHREELLQGTASE----------------------------ITRRYYELASDLVSVARKTETSLQKIRLGAQRRAGASSDVSDNNISDTDKICMQLFLDIQEYGRNLALLGVDATSMPAYRSLWQCV-APSERQNT 672
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: A0A0V0IQM9_SOLCH (Putative conserved oligomeric Golgi complex subunit 2-like n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IQM9_SOLCH) HSP 1 Score: 80.9 bits (198), Expect = 1.390e-12 Identity = 66/206 (32.04%), Postives = 95/206 (46.12%), Query Frame = 1
Query: 7 IKGITATYRMTNKPPPHRPSPFVPNVLRALREF--DQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARR--GSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHLLDVVEATSEEPST 612
+KGITATYRMTNKP P R SP+V VLR L+EF +R C T++ + E ++G A L + +RY ++ SEL+ R+ E++L K R+ A+R G+ + +D S+ DKI MQL LD+ E+ R + LGVD S + L V A +E +T
Sbjct: 376 LKGITATYRMTNKPLPVRHSPYVSGVLRPLKEFLEGERAATCLTNETRN---------------------ELLQGAA--------------------------------LEITQRYNDLTSELVNMSRRTESSLQKLRLGAQRRAGASSDVSDHNLSETDKICMQLFLDIQEYARSLSLLGVDAASIPPYQSLWQCV-APAERKNT 527
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: A0A2Z7ASN0_9LAMI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7ASN0_9LAMI) HSP 1 Score: 81.3 bits (199), Expect = 1.450e-12 Identity = 64/191 (33.51%), Postives = 87/191 (45.55%), Query Frame = 1
Query: 7 IKGITATYRMTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARR--GSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHL 573
+KGITATYRMTNKP P R SP+V VLR L+ F DG A+ + + E + + G A + RY E+ +EL+ R+ E++L K R+ A+R G+ + AD SD DKI MQL LD+ E+GR A LG+D TS + L
Sbjct: 604 LKGITATYRMTNKPLPVRHSPYVSGVLRPLKAF-----------------LDGERAATYLTSDLRE--QLLHGAAN--------------------------------EITHRYYELAAELINMARKTESSLQKIRLGAQRRAGASSDVADHNVSDTDKICMQLFLDIQEYGRNLASLGIDATSIPTYRSL 743
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Match: A0A4D8ZR94_SALSN (Conserved oligomeric Golgi complex subunit 2 n=4 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZR94_SALSN) HSP 1 Score: 81.3 bits (199), Expect = 1.460e-12 Identity = 68/204 (33.33%), Postives = 94/204 (46.08%), Query Frame = 1
Query: 7 IKGITATYRMTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVVAAAPGEDGERVEGGAKGSGSDGSXXXXXXXXXXXXXXXXGGWKQRVVLAVCERYLEIVSELLLTVRQMENTLNKRRVTARR--GSRAGGADQGPSDKDKIMMQLRLDVAEFGREAAQLGVDLTSTKVFGHLLDVVEATSEEPST 612
+KGITAT+RMTNKP P R SP+V VLR L+ F +G A+ + E E +G+ S+ + RY E+ S+L+ R+ E++L K R+ A+R G+ + +D SD DKI MQL LD+ E+GR A LGVD TS + L V A SE +T
Sbjct: 614 LKGITATFRMTNKPLPVRHSPYVSGVLRPLKLF-----------------LEGEQAATYLTT------EHREELLQGTASE----------------------------ITRRYYELASDLVSVARKTESSLQKIRLGAQRRAGASSDVSDNNISDTDKICMQLFLDIQEYGRNLALLGVDATSIPAYRSLWQCV-APSERQNT 765 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15452.3191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15452.3191.1 >prot_H-paniculata_contig15452.3191.1 ID=prot_H-paniculata_contig15452.3191.1|Name=mRNA_H-paniculata_contig15452.3191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp MTNKPPPHRPSPFVPNVLRALREFDQRWGVCATSKDEDQKGADGNDASVVback to top mRNA from alignment at H-paniculata_contig15452:636..4401- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15452.3191.1 ID=mRNA_H-paniculata_contig15452.3191.1|Name=mRNA_H-paniculata_contig15452.3191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3766bp|location=Sequence derived from alignment at H-paniculata_contig15452:636..4401- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15452:636..4401- >mRNA_H-paniculata_contig15452.3191.1 ID=mRNA_H-paniculata_contig15452.3191.1|Name=mRNA_H-paniculata_contig15452.3191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig15452:636..4401- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |