mRNA_H-paniculata_contig15446.3188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE) HSP 1 Score: 172 bits (436), Expect = 3.460e-49 Identity = 112/265 (42.26%), Postives = 141/265 (53.21%), Query Frame = 1
Query: 4 HQHLPLSMARVACSFFLSGQVPRGGEGIRACGRAGSREGFASGVVARGIR-----------------GGAPE*ARSRVP*NSCGGPSRCGHTTKKG*PYVWYVLEAQQGRRFYREVERYASSAFGQMEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVESFFSKYDTCTHKNDTREIDIVRTGQYRSSNSRFISRLSPVSEEIKIAGDRAIVQARALRKASSARVP*ERHIRKRNHDIVAFLTDMNSK 747
HQHLP SMAR+ACS F G+ AGS + F V R G E + + S T +K + F EVERYA SA + E+ VD+D +N + VS F WSFPLLYEWACH I F PIHQQLVES FS +DTCT K+D+REIDIVR GQ+RSS+SR + RL ++EI+ AGD+AI AR L+K+++ +P ER +RKR HD FL D + K
Sbjct: 12 HQHLPYSMARLACSSFFEGKW------------AGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDL---SEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIV---VDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEK 258
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.740e-45 Identity = 93/184 (50.54%), Postives = 119/184 (64.67%), Query Frame = 1
Query: 265 EAQQGRRFYREVERYASSAFGQMEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVESFFSKYDTCTHKNDTREIDIVRTGQYRSSNSRFISRLSPVSEEIKIAGDRAIVQARALRKASSARVP*ERHIRKRNHDIVAFLTDMNSKQS--TAWAVRGLGDDSSESSESE 810
E + F +EVE YA+SA + EV + D D DNP VS+F W+FPLLYEWA H I+ IH+QLV S FSKYDTCT ++D+REIDIVR GQ+RS+ SR I +L + EI+ AG++AI +ARALRKA+S VP ER RKR HD+ F+ +K W VR + D S SES+
Sbjct: 94 ELNESAEFRKEVEVYAASAHEKKEVVSD--DLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLDMSESESESD 275
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 150 bits (378), Expect = 6.980e-39 Identity = 109/279 (39.07%), Postives = 145/279 (51.97%), Query Frame = 1
Query: 19 LSMARVACSFFLSGQVPRGGEGIRACGRAGSREGFASGVVARGIRGGAPE*ARSRVP*NSCGGPSRCGHTTKKG*PY----------VWYVLEAQQGRRFYREVERYASSAFGQMEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVESFFSKYDTCTHKNDTREIDIVRTGQYRSSNSRFISRLSPVSEEIKIAGDRAIVQARALRKASSARVP*ERHIRKRNHDIVAFLTDMN--SKQSTAWAVRGLGDD---SSESSESE 810
+SM R+ACS F G+ AGS EGF V E AR+ + P+R T KG + + F E+ERYA+SA + +V D D +N + VS F W+FP LYEWACH ++F PIHQQLVES S YDT T K+D+RE+DIVR GQ+ S SR + RL ++EI+ GD+AI A L+K++S VP ER +R HD FL D + SK + W V+ + ++ SSE SESE
Sbjct: 163 MSMTRLACSSFYEGKW------------AGSEEGFEHAV--------GQEVARALL---LAFWPNRYESTEWKGWEEQNTFRENKLTLGMFSKLAASAEFREELERYAASAHEKKKVVS---DVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSKWVVKSVMEEVLSSSEESESE 415
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.120e-38 Identity = 106/265 (40.00%), Postives = 143/265 (53.96%), Query Frame = 1
Query: 4 HQHLPLSMARVACSFFLSGQVPRGGEGIR-ACGRAGSREGFAS--GVVARGIR--GGAPE*ARSRVP*NSCGGPSRCGHTTKKG*PYVWYVLEAQQGRRFYREVERYASSAFGQMEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVESFFSKYDTCTHKNDTREIDIVRTGQYRSSNSRFISRLSPVSEEIKIAGDRAIVQARALRKASSARVP*ERHIRKRNHDIVAFLTDMN--SKQSTAWAVRGL 777
HQHLP SMAR+ACS F G+ + I A G+ +R + + G G E + + S T +K + F EVERY+ SA + E+ VD+D ++ + VS F WSFPLLYEWA H I F PIHQQLV+S S YDTCT K+D+REI IVR GQ+RSS SR + RL ++EI+ AGD+ I AR L+K+++ +P + +RKR D FL D + SK + W VR +
Sbjct: 508 HQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDL---SEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIV---VDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGSNWVVRSV 766
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 112 bits (281), Expect = 8.550e-25 Identity = 88/239 (36.82%), Postives = 118/239 (49.37%), Query Frame = 1
Query: 1 RHQHLPLSMARVAC-SFFLSGQVPRGGEGIRACGRAGSREGFASGVVARGIRGGAPE*ARSRVP*NSCGGPSRCGHTT---KKG*PYVWYVLEAQQGRRFYREVERYASSAFGQMEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVESFFSKYDTCTHKNDTREIDIVRTGQYRSSNSRFISRLSPVSEEIKIAGDRAIVQARALRKASSARVP*ERHIRKR 705
RHQ LPLSMAR+ C SFF + G +A G +R F V + G P R R G TT +K R E+E+YA+S +G D+ VD +S ++ + FPLLY+ CH YFVPIHQQL+E+FFSK+D+C K D E+DIVR G ++S+ SR I E+I+ AG + + +AR + S AR P E RKR
Sbjct: 236 RHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARA-FLH-VAWSALYEGEPRTEREREYRTQL--VKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGWG-----DKEVDQGAPKGTSALARL---FDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.980e-23 Identity = 85/231 (36.80%), Postives = 117/231 (50.65%), Query Frame = 1
Query: 1 RHQHLPLSMARVAC-SFFLSGQVPRGGEGIRACGRAGSREGFASGVVARGIRGGAPE*ARSRVP*NSCGGPSRCGHTT--KKG*PYVWYVLEAQQGRRFYR-EVERYASSAFGQMEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVESFFSKYDTCTHKNDTREIDIVRTGQYRSSNSRFISRLSPVSEEIKIAGDRAIVQARALRKASSARVP 681
RHQ LPLSMAR+ C SF+ + GG +A G +R F V G+ G P R R G TT ++ + G R E+E+YA+S +G E+ DES S+L F PLLY CH YFVPIHQQL+E+FFSKYD+C K D E+D+VR G ++S+ SR I + + ++I+ AG + + +A + S AR P
Sbjct: 237 RHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARA-FPH-VAWPGLYEGEPRTERERQYRTQLA--KDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEI-DESAPK---GTSALARLF----DLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKP 455
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.140e-14 Identity = 67/190 (35.26%), Postives = 90/190 (47.37%), Query Frame = 1
Query: 1 RHQHLPLSMARVAC-SFFLSGQVPRGGEGIRACGRAGSREGFASGVVARGIRGGAPE*ARSRVP*NSCGGPSRCGHTTKKG*PYVWYVLE-AQQGRRFYREVERYASSAFGQMEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVESFFSKYDTCTHKNDTREIDIVRTGQYRS 564
RHQ LPLSMAR+ C SF+ + G +A G +R G R G P R R G ++ + + ++ EVE YA S FG EV +E+ ++LV F FP LY++ C YFVPIHQQL+E+FFSKYDTC K D +D VR G +++
Sbjct: 187 RHQELPLSMARIGCPSFYARMGIMGKGAVEQAVGPEYARAFLHVGWPER--YEGEPRSEREREYRVQLGEDFGGVIDARRKDELTFGLFSIVEEDAEMRCEVEGYAESGFGDKEVDEEAEKG----TTALVRLFE---KFPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKTDVAVMDSVRVGSWQT 367
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 5.460e-11 Identity = 77/239 (32.22%), Postives = 102/239 (42.68%), Query Frame = 1
Query: 1 RHQHLPLSMARVAC-SFFLSGQVPRGGEGIRACGRAGSREGFASGVVARGIRGGAPE*ARSRVP*NSCGGPSRCGHTT--KKG*PYVWYVLEAQQGRRFYR-EVERYASSAFGQMEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVESFFSKYDTCTHKNDTREIDIVRTGQYRSSNSRFISRLSPVSEEIKIAGDRAIVQARALRKASSARVP*ERHIRKR 705
RHQ LPLSMAR+ C SF+ + GG +A G +R F V G+ G P R R G TT ++ + + G R E+E+YA+S +G E+ DES P S S FPLLY+ CH YFVPIHQQL+E+FFSK C ++I AG++ + +A + S AR P E RKR
Sbjct: 162 RHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARA-FLH-VAWPGLYEGEPRTEREREYRTQL--VKDLGGTTEARRKDELTFGLFSCIDGDLSVRSELEQYANSGWGNKEI-DESA------PKS-TSELARLLDFPLLYQLVCHRFYFVPIHQQLIEAFFSKNIVCA---------------------------DATGDQISGAGNKVLTEATEAKAISHARKPAENLSRKR 361 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15446.3188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15446.3188.1 >prot_H-paniculata_contig15446.3188.1 ID=prot_H-paniculata_contig15446.3188.1|Name=mRNA_H-paniculata_contig15446.3188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp MEVTDESVDNDCDNPSSLVSSFTPSWSFPLLYEWACHLIYFVPIHQQLVEback to top mRNA from alignment at H-paniculata_contig15446:403..1212+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15446.3188.1 ID=mRNA_H-paniculata_contig15446.3188.1|Name=mRNA_H-paniculata_contig15446.3188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=810bp|location=Sequence derived from alignment at H-paniculata_contig15446:403..1212+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15446:403..1212+ >mRNA_H-paniculata_contig15446.3188.1 ID=mRNA_H-paniculata_contig15446.3188.1|Name=mRNA_H-paniculata_contig15446.3188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig15446:403..1212+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |