mRNA_H-paniculata_contig15439.3184.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15439.3184.1
Unique NamemRNA_H-paniculata_contig15439.3184.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: D7FYI0_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI0_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.320e-15
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:  163 SSPRQPS---LKNIPMTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            ++PR+PS   L+ I   CLPRGG Y+ST+IGP+Q+GIPPETIKDS++ GL VPQY++VP
Sbjct:   74 AAPRKPSRLRLQRISKQCLPRGGTYLSTVIGPIQVGIPPETIKDSMALGLPVPQYFVVP 132
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: A0A6H5KVN3_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-14
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:  169 PRQPSLKNIPMTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            P  P L+ I   CLPRGG Y++T+IGP+Q+GIPPETIKDS++ GL VPQY++VP
Sbjct:   79 PSIPRLRKISKQCLPRGGTYLATVIGPIQVGIPPETIKDSMALGLPVPQYFVVP 132
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: A0A836CNA7_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.170e-12
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  109 ALAIGRSPTLDHNSLRRSSSPRQPSLKNIP-------MTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            +L     PT    +  RSSSP +P L  +P       +T LPRGG YV T  GP+QIGIPPETIKDS++ GL +PQY+++P
Sbjct:   17 SLCSSEQPTTAATNNYRSSSP-EPDLPLLPQAAETIKVTALPRGGIYVPTAAGPLQIGIPPETIKDSMALGLAMPQYFVMP 96
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: A0A7S3Z9A7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z9A7_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 4.770e-11
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:  184 LKNIPMTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVPQ 333
            LK + +  L RGG+YV T IGP+Q+G+PPETIKDSLS GLT+P  +++P+
Sbjct:  140 LKKLTVLHLTRGGYYVRTSIGPIQVGMPPETIKDSLSQGLTLPTNFVIPR 189
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: W4GLH8_9STRA (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLH8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.220e-10
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  163 SSPRQPSLKNIPMTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            SS   P  + + +T LPRGG  VST IGPVQ GIPPETIKDS+  GL VP Y++VP
Sbjct:    2 SSDTPPPSEPLKVTFLPRGGCIVSTSIGPVQYGIPPETIKDSMVLGLPVPMYFVVP 57
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: A0A024UV41_9STRA (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV41_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.280e-10
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  199 MTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            +T LPRGG  VST IGPVQ GIPPETIKDS++ GL VP Y++VP
Sbjct:   13 VTFLPRGGCIVSTSIGPVQYGIPPETIKDSMAMGLPVPMYFVVP 56
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: A0A1W0ABB6_9STRA (cGMP-dependent 3',5'-cGMP phosphodiesterase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABB6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.350e-10
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  187 KNIPMTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            + + +T LPRGG  VST IGPVQ GIPPETIKDS++ GL VP Y++VP
Sbjct:    4 EKLKVTDLPRGGTIVSTSIGPVQYGIPPETIKDSMALGLPVPMYFIVP 51
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: A0A1V9ZS88_9STRA (cGMP-dependent 3',5'-cGMP phosphodiesterase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS88_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.240e-10
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  199 MTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            +T LPRGG  VST IGP+Q GIPPETIKDS++ GL VP Y++VP
Sbjct:   13 VTDLPRGGTIVSTSIGPIQYGIPPETIKDSMALGLPVPMYFIVP 56
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BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: A0A485KV47_9STRA (Aste57867_12043 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KV47_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.250e-10
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  145 NSLRRSSSPRQPSLKNIP-----MTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            +++ + ++P QP+  + P     +T LPRGG  VST IGP+Q GIPPETIKDS+  GL VP +++VP
Sbjct:    7 DAVEKHAAPPQPTSSSAPSEPLKVTQLPRGGCIVSTSIGPIQYGIPPETIKDSMVLGLPVPMHFIVP 73
[Close]
BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Match: A0A6G0XXX9_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXX9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-10
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  181 SLKNIPMTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSGLTVPQYYLVP 330
            S + + +T LPRGG  VST +GPVQ GIPPETIKDS+  GL VP Y++VP
Sbjct:    7 SQERLKVTQLPRGGCIVSTSLGPVQYGIPPETIKDSMVLGLPVPMYFIVP 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15439.3184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI0_ECTSI2.320e-1562.71Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KVN3_9PHAE1.100e-1462.96Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A836CNA7_9STRA2.170e-1249.38Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3Z9A7_9EUKA4.770e-1158.00Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
W4GLH8_9STRA1.220e-1060.71Cyclic nucleotide-binding domain-containing protei... [more]
A0A024UV41_9STRA2.280e-1070.45Cyclic nucleotide-binding domain-containing protei... [more]
A0A1W0ABB6_9STRA2.350e-1064.58cGMP-dependent 3',5'-cGMP phosphodiesterase n=1 Ta... [more]
A0A1V9ZS88_9STRA4.240e-1068.18cGMP-dependent 3',5'-cGMP phosphodiesterase n=1 Ta... [more]
A0A485KV47_9STRA4.250e-1049.25Aste57867_12043 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XXX9_9STRA5.800e-1062.00Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15439contigH-paniculata_contig15439:3738..6125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue5e-14
Seed eggNOG ortholog2880.D7FYI0
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004112,GO:0004114,GO:0004115,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006195,GO:0006198,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008081,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009187,GO:0009214,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019932,GO:0019933,GO:0019934,GO:0019935,GO:0023052,GO:0032101,GO:0033036,GO:0034404,GO:0034613,GO:0034641,GO:0034654,GO:0034655,GO:0035556,GO:0040012,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046058,GO:0046434,GO:0046483,GO:0046700,GO:0047555,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050920,GO:0050926,GO:0051179,GO:0051641,GO:0051716,GO:0055086,GO:0061118,GO:0065007,GO:0070727,GO:0071704,GO:0072521,GO:0072523,GO:0072697,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1990778
EggNOG free text desc.Metallo-beta-lactamase superfamily
EggNOG OGs28VX6@1,2R2P1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size334
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929235.7833657-CDS-H-paniculata_contig15439:3737..38151622929235.7833657-CDS-H-paniculata_contig15439:3737..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15439 3738..3815 -
1691480781.694731-CDS-H-paniculata_contig15439:3737..38151691480781.694731-CDS-H-paniculata_contig15439:3737..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15439 3738..3815 -
1622929235.8082464-CDS-H-paniculata_contig15439:5870..61251622929235.8082464-CDS-H-paniculata_contig15439:5870..6125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15439 5871..6125 -
1691480781.7082248-CDS-H-paniculata_contig15439:5870..61251691480781.7082248-CDS-H-paniculata_contig15439:5870..6125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15439 5871..6125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15439.3184.1prot_H-paniculata_contig15439.3184.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15439 3738..6125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15439.3184.1

>prot_H-paniculata_contig15439.3184.1 ID=prot_H-paniculata_contig15439.3184.1|Name=mRNA_H-paniculata_contig15439.3184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MPTVVGTSSRILEASTSTGSLPKPSSLARMEESAPSALAIGRSPTLDHNS
LRRSSSPRQPSLKNIPMTCLPRGGFYVSTIIGPVQIGIPPETIKDSLSSG
LTVPQYYLVPQ
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mRNA from alignment at H-paniculata_contig15439:3738..6125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15439.3184.1 ID=mRNA_H-paniculata_contig15439.3184.1|Name=mRNA_H-paniculata_contig15439.3184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2388bp|location=Sequence derived from alignment at H-paniculata_contig15439:3738..6125- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCACTGTGGTGGGCACCTCAAGTCGGATATTAGAGGCCTCCACCTC
CACTGGTAGCCTCCCTAAACCGTCATCACTAGCTAGGATGGAAGAATCAG
CACCAAGTGCGCTTGCTATCGGGAGATCTCCTACCCTCGACCACAATAGT
CTTCGACGAAGCAGCAGCCCGCGACAACCCTCTCTGAAGAATATCCCGAT
GACTTGCTTGCCACGGGGGGGTTTCTACGTTTCAACTATAATCGGGCCTG
TCCAGGTACGTCTACACATGTTTTCTTTGGTAGAGTTGGGCTACGGTAGG
GGGGGCAGGTGTTTCGAGCCAGTTATTAAACGAAAGGACCGCTTCGCAAA
GCGGCTGGGACAAAAATCAAATGGAGAATATATTCACACATATTCAATGG
TACACAATGCACGATTCGAACAAACCGTGTTCTGTTCAAGAGAGAAAATG
TGTTTCGCCGAGTTGCTCCCAAGAGCGGCTCCAAAAATGAAAGAAGCGGC
TCGGTGATACTCCCCCCGATGCCCTAGCCTTACTTCGTATCAAGTCGTCA
GTGGACCGATGGCGACCGTGGTGTTGGTGGTGTTGGTGGTGTTGGTGGTG
TTGGTGGCGGTGGTGGCGATGGTGGTGATGGTAGCGGTGGTAAATTGGTG
GCCACAGTGGTCAGGGTTGATTTAGGCCCGCGTTCAACGTACGTGAGGAT
GTATGAATTCAACGCCCACAACCGACGTGTACGATAAATGACAAGGTTCC
AGGAGGATCAAGGGGTCACACAGAAGGCAGGGCTTGACCCCCCCCCCCCC
CCCCCCGGCCCCGCTTTTTTTGTCCCTTATCGCTCTTCTGAGCGTGTAGT
TTCTGCTAGGCCATGTAGGTGAGCTGCAAGCTTTTTTTGTATGCTATCCA
GATTCCACTGCATATGTATAGCACATGCAACATCGTAGAGCAGGCAATCA
ATGCTGCAGCACCACCTTGTCTAACGTGATGTGTTCGTCTCGCATAGGTT
CCGGCCGACCAATACGCTTGCTTCAAATGATTCAATTTCTGACGGCGAAG
ACCCGTAGATCGAAAAGAGGAATCACAACTAGAGCCTGGACAAGAACACA
TCGATGTTCATCTGCTAGCTATTTCAAACAATTAATATAAGCCGGATAGT
AGAGAGAATCTTCACCACTGCGCGTTCTGCTGCAAATTATAACCTGTTCT
TATTCTTCTAGCCCCCGTGATGCTGCCAAGATCGCCAAGATCGCCAATAT
CTCTAAACAACTTTGATTTCAAAATTCGAAGTCAGTACATTACACTCACT
CATCATTATATCAGTATATGCTTATCGACCTGCTTTTCCGAGTCGTTCGT
GTGCGGCGCACGATAAAACAAACTCTAAGTAATCTAAATCGCCAAAACAA
CATCAAGAGGCATCGAGCGACATTTCCTGAAGCAATCAAACAATTCAATG
TGGTGCGCATCTGCAAAATATCTAAAGCACAAAGCTTGTTTCGTCCCCTG
TTAATAGGTGGTACACTCAAGCAATCCCGTAGATACACAACATCAGCGAC
TGCCTGTACTGCTGTTTAGTCCGGCCGAAACAGCATGAATTATGAATGGT
AAATTTTGTTTTTGTTTCGAACACATAGCTGGATTCCATTGGACCCGCGG
CCATATTTTTGATGGTGATTCACTCGCTCGAAAGCAAGAAGAATGCTCTA
CGAGAATATTGCCGTTAACTCCAACGTTGACAAGCGAGTAAGACCGCTGC
CCCCACCGCGTAGTTAAATAGGCAAGAACTGAGGCATTGTACTCCCAGCT
TCCGACCGAAGGTTCGGTAGATGAACTAATCCACAACGGAAGGAGAAATT
CGCTCAAACCCGCAGTCACATTTATGGCTTTCTATTGTCACTGGGCCTTT
TGGTAGAGACTCTCGGTACGGTACCAGGGAGCCACGGTGCATTCACGGTA
CAGTATCGATCCAGTAACTCGGTTTTGCGGTAACGGTAGCGGTAACTAGC
TCTTATCCTGTGGTAAATCGTGTTTGGCGTACCGTGCACAATAGCGGTAA
CCCTAGTTCGAGGGTTGGCAGCAGTTTGCACAATACCGCGGTTTTACCGC
GGTAAAATCACCAAGGTAGGTGTACCAAGGAAACCTCTGAGAAAAAATCA
TGTAGTATCATTGATGGAGTTACGATATTCGGGACACCAGTCTCACAAGA
GTGTCATAAAGCGAGAGTGACGAACCTAGGATGACTTTGAACATAACAAT
ATTCCCAACAACGACCCCCGTCACCACACACTTTCTATTCTTGCCTGCCT
CTGCCGCCAGATCGGGATCCCCCCAGAAACCATCAAGGACTCGCTTAGTT
CGGGGTTAACTGTGCCTCAGTACTATCTTGTGCCTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15439:3738..6125-

>mRNA_H-paniculata_contig15439.3184.1 ID=mRNA_H-paniculata_contig15439.3184.1|Name=mRNA_H-paniculata_contig15439.3184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig15439:3738..6125- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCACTGTGGTGGGCACCTCAAGTCGGATATTAGAGGCCTCCACCTC
CACTGGTAGCCTCCCTAAACCGTCATCACTAGCTAGGATGGAAGAATCAG
CACCAAGTGCGCTTGCTATCGGGAGATCTCCTACCCTCGACCACAATAGT
CTTCGACGAAGCAGCAGCCCGCGACAACCCTCTCTGAAGAATATCCCGAT
GACTTGCTTGCCACGGGGGGGTTTCTACGTTTCAACTATAATCGGGCCTG
TCCAGATGCCCACTGTGGTGGGCACCTCAAGTCGGATATTAGAGGCCTCC
ACCTCCACTGGTAGCCTCCCTAAACCGTCATCACTAGCTAGGATGGAAGA
ATCAGCACCAAGTGCGCTTGCTATCGGGAGATCTCCTACCCTCGACCACA
ATAGTCTTCGACGAAGCAGCAGCCCGCGACAACCCTCTCTGAAGAATATC
CCGATGACTTGCTTGCCACGGGGGGGTTTCTACGTTTCAACTATAATCGG
GCCTGTCCAGATCGGGATCCCCCCAGAAACCATCAAGGACTCGCTTAGTT
CGGGGTTAACTGTGCCTCAGTACTATCTTGTGCCTCAGATCGGGATCCCC
CCAGAAACCATCAAGGACTCGCTTAGTTCGGGGTTAACTGTGCCTCAGTA
CTATCTTGTGCCTCAG
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