mRNA_H-paniculata_contig15435.3182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15435.3182.1
Unique NamemRNA_H-paniculata_contig15435.3182.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15435.3182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15435contigH-paniculata_contig15435:2364..3121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size758
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15435.3182.1prot_H-paniculata_contig15435.3182.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15435 2523..3014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929235.0118666-UTR-H-paniculata_contig15435:2363..25221622929235.0118666-UTR-H-paniculata_contig15435:2363..2522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15435 2364..2522 +
1691480781.6067972-UTR-H-paniculata_contig15435:2363..25221691480781.6067972-UTR-H-paniculata_contig15435:2363..2522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15435 2364..2522 +
1622929235.03796-UTR-H-paniculata_contig15435:3014..31211622929235.03796-UTR-H-paniculata_contig15435:3014..3121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15435 3015..3121 +
1691480781.623551-UTR-H-paniculata_contig15435:3014..31211691480781.623551-UTR-H-paniculata_contig15435:3014..3121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15435 3015..3121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929235.023751-CDS-H-paniculata_contig15435:2522..30141622929235.023751-CDS-H-paniculata_contig15435:2522..3014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15435 2523..3014 +
1691480781.614543-CDS-H-paniculata_contig15435:2522..30141691480781.614543-CDS-H-paniculata_contig15435:2522..3014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15435 2523..3014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15435.3182.1

>prot_H-paniculata_contig15435.3182.1 ID=prot_H-paniculata_contig15435.3182.1|Name=mRNA_H-paniculata_contig15435.3182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MTKRQVELSGIARPTYYVLSYAGSCITAIQLDGGEARDVQLLDCAVQYTP
LGIPKPFERQRHELGIARRYSHGLNHHLMDNSTMDTLQYVICAPNYLDCS
RCFAGEGTRGISIDTTGKLKRPMYLPHANSYIGQKMHHISVVARHGTASI
WSERSLTSQESGQ*
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mRNA from alignment at H-paniculata_contig15435:2364..3121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15435.3182.1 ID=mRNA_H-paniculata_contig15435.3182.1|Name=mRNA_H-paniculata_contig15435.3182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=758bp|location=Sequence derived from alignment at H-paniculata_contig15435:2364..3121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCTGTGTTTCCCCCGTGAAGTCGACGCGATGCTGTTGTGGATGAATT
CAACTCCGCGCTCTGTGCGGTGCGGTCCAATTTTTTCGGGATCAGACGCA
AGGAAGGCGTTCGTGGTGACAAAGGGGACCAGTATCAAGCATCCCCTAGG
AGAAGGAGCATGACAAAGAGGCAAGTTGAACTGAGTGGAATTGCCCGACC
GACCTACTATGTGTTGAGTTACGCCGGCTCATGCATCACGGCGATCCAAC
TAGATGGAGGCGAGGCTCGGGACGTCCAGCTACTTGACTGTGCTGTACAA
TACACCCCACTAGGCATCCCTAAACCGTTTGAGAGGCAGAGGCATGAACT
GGGTATAGCTCGGCGATACTCTCATGGATTAAATCATCACCTGATGGACA
ACAGTACTATGGATACACTACAGTATGTTATATGTGCACCCAATTATCTA
GACTGCAGTAGATGCTTTGCAGGAGAGGGTACGCGAGGCATCAGCATAGA
CACAACGGGCAAACTGAAAAGACCCATGTACCTACCGCACGCAAACTCAT
ATATTGGACAGAAAATGCATCATATCTCTGTTGTTGCAAGACACGGCACC
GCATCTATTTGGTCCGAACGCAGCTTGACGTCGCAAGAGAGCGGCCAATA
GCGATAATGATACATAGAGTAGTTCGGTTATTATGTCCTCTCACCTCTCA
TGCTCGCGTCAGCTCGATCAAATGTGATGTACCGTCTGTTGACCGTTCGT
ACCATTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig15435:2364..3121+

>mRNA_H-paniculata_contig15435.3182.1 ID=mRNA_H-paniculata_contig15435.3182.1|Name=mRNA_H-paniculata_contig15435.3182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig15435:2364..3121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAAGAGGCAAGTTGAACTGAGTGGAATTGCCCGACCGACCTACTA
TGTGTTGAGTTACGCCGGCTCATGCATCACGGCGATCCAACTAGATGGAG
GCGAGGCTCGGGACGTCCAGCTACTTGACTGTGCTGTACAATACACCCCA
CTAGGCATCCCTAAACCGTTTGAGAGGCAGAGGCATGAACTGGGTATAGC
TCGGCGATACTCTCATGGATTAAATCATCACCTGATGGACAACAGTACTA
TGGATACACTACAGTATGTTATATGTGCACCCAATTATCTAGACTGCAGT
AGATGCTTTGCAGGAGAGGGTACGCGAGGCATCAGCATAGACACAACGGG
CAAACTGAAAAGACCCATGTACCTACCGCACGCAAACTCATATATTGGAC
AGAAAATGCATCATATCTCTGTTGTTGCAAGACACGGCACCGCATCTATT
TGGTCCGAACGCAGCTTGACGTCGCAAGAGAGCGGCCAATAGATGACAAA
GAGGCAAGTTGAACTGAGTGGAATTGCCCGACCGACCTACTATGTGTTGA
GTTACGCCGGCTCATGCATCACGGCGATCCAACTAGATGGAGGCGAGGCT
CGGGACGTCCAGCTACTTGACTGTGCTGTACAATACACCCCACTAGGCAT
CCCTAAACCGTTTGAGAGGCAGAGGCATGAACTGGGTATAGCTCGGCGAT
ACTCTCATGGATTAAATCATCACCTGATGGACAACAGTACTATGGATACA
CTACAGTATGTTATATGTGCACCCAATTATCTAGACTGCAGTAGATGCTT
TGCAGGAGAGGGTACGCGAGGCATCAGCATAGACACAACGGGCAAACTGA
AAAGACCCATGTACCTACCGCACGCAAACTCATATATTGGACAGAAAATG
CATCATATCTCTGTTGTTGCAAGACACGGCACCGCATCTATTTGGTCCGA
ACGCAGCTTGACGTCGCAAGAGAGCGGCCAATAG
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