mRNA_H-paniculata_contig154.3165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig154.3165.1
Unique NamemRNA_H-paniculata_contig154.3165.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig154.3165.1 vs. uniprot
Match: D8LBW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBW1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 8.050e-13
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  118 DLVESSKATEAYPTAPVIVWSEYMDLAPGDVVVTVEHCHECHRHRSTTRHEEEGYVRHANAVK 306
            + V   K        P + W E+ ++  GDVVVTVEHCH CHRHR TTRH+ E Y+ HANAVK
Sbjct:  102 ETVREEKGDGLASAVPTVSWPEHAEMEKGDVVVTVEHCHGCHRHRMTTRHDPEVYLSHANAVK 164
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BLAST of mRNA_H-paniculata_contig154.3165.1 vs. uniprot
Match: A0A6H5KVB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.160e-8
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  163 PVIVWSEYMDLAPGDVVVTVEHCHECHRHRSTTRHE 270
            P++ W E+ ++  GDVVVTVEHCH CHRHR TTRH+
Sbjct:   10 PMVSWPEHAEMEKGDVVVTVEHCHGCHRHRMTTRHD 45
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BLAST of mRNA_H-paniculata_contig154.3165.1 vs. uniprot
Match: A0A7S3GU28_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU28_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.700e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:  175 WSEYMDLAPGDVVVTVEHCHECHRHRSTTRHEEEGYVRHANAVK 306
            W EY  +  GDVV+TVEHC +CH H   T H+EE YV+ A  V+
Sbjct:  308 WPEYKVMEAGDVVLTVEHCCQCHEHDMCTHHKEEQYVQMAETVR 351
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BLAST of mRNA_H-paniculata_contig154.3165.1 vs. uniprot
Match: D7FVI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI6_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 3.200e-5
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:  163 PVIVWSEYMDLAPGDVVVTVEHCHECHRHRSTTRHEEEGYVRHANAVK 306
            P + WSE   +  GDV+VTVEHC  C RHR +  H  + Y+R A A+K
Sbjct:   87 PPLRWSEEKHMVAGDVLVTVEHCAACSRHRMSLHHNADAYIRRAAAMK 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig154.3165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBW1_ECTSI8.050e-1352.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVB5_9PHAE6.160e-863.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GU28_9STRA1.700e-552.27Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
D7FVI6_ECTSI3.200e-547.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig154contigH-paniculata_contig154:28123..30053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue4.7e-11
Seed eggNOG ortholog2880.D8LBW1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EUFD@1,2SWM4@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003480.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size309
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig154.3165.1prot_H-paniculata_contig154.3165.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig154 28124..30053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929232.8750117-CDS-H-paniculata_contig154:28123..281531622929232.8750117-CDS-H-paniculata_contig154:28123..28153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 28124..28153 -
1691480780.6679437-CDS-H-paniculata_contig154:28123..281531691480780.6679437-CDS-H-paniculata_contig154:28123..28153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 28124..28153 -
1622929232.891028-CDS-H-paniculata_contig154:28909..291641622929232.891028-CDS-H-paniculata_contig154:28909..29164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 28910..29164 -
1691480780.6767168-CDS-H-paniculata_contig154:28909..291641691480780.6767168-CDS-H-paniculata_contig154:28909..29164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 28910..29164 -
1622929232.9031763-CDS-H-paniculata_contig154:30032..300531622929232.9031763-CDS-H-paniculata_contig154:30032..30053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 30033..30053 -
1691480780.683792-CDS-H-paniculata_contig154:30032..300531691480780.683792-CDS-H-paniculata_contig154:30032..30053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 30033..30053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig154.3165.1

>prot_H-paniculata_contig154.3165.1 ID=prot_H-paniculata_contig154.3165.1|Name=mRNA_H-paniculata_contig154.3165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
DFLHERKEIEQDAPKQQSKQLNAGTWAASRKCSELTSVPDLVESSKATEA
YPTAPVIVWSEYMDLAPGDVVVTVEHCHECHRHRSTTRHEEEGYVRHANA
VK
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mRNA from alignment at H-paniculata_contig154:28123..30053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig154.3165.1 ID=mRNA_H-paniculata_contig154.3165.1|Name=mRNA_H-paniculata_contig154.3165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1931bp|location=Sequence derived from alignment at H-paniculata_contig154:28123..30053- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTCTTGCATGAGAGAAAGGTAGGCGAGCTACTCCAGATTATCTACCG
GAAGATTTCCACTAGCAGCTAATATGTGGTCCGTGCGACTTTGGTCTGAT
ACGACTCAAGCATCCCGCATGTGGAGCTCGACGCTGTACCTCTCTAGAGA
GGATTATGTGTCAATAAAACTATTTCCCCCATCAAGCAGGAGCTGCCGCA
GAGGATAAACCACATGTGATATTGCGAGGGTCAGGGACGAATATTATACG
TAACACGTTTTGTAGCAGGATTTCGTTTTTTTCTGCACAATCTCGCTGCT
GAGTGAAAGCGTACGAAATGTCGCTTTTCTCGATGATGTCAAGAATTATT
TTCTTATTGCGCGCCTGCTGTGCATGTGAACATGTCTCCAAGTAGAATAG
CTGGGGCAACGGGGGTGTAAAATTCGGACCGTCTCAGGGACCGCGTCTGG
GCCCGGCGCTGCCTCCGAAAGGCCCAACGAAACCCCGATGGCCGAGTATG
TCTGTAGAGACGAGCGTTCGACGGTACATAGAGACTGTGCGTCGATCAAA
GGTGAACTGAGTGACAAAAATTGTGCTGCATGATGCACAGGATGATTTTT
CGTCGGTGTCCTGTACCAAAAGAAACGTACGCTTTTGATGTTTTGAGTGT
GCGGCATTTCAATAGCAGTTGGTGACCTTCCAACGGCAAAGCGTCTCAAG
CTCGAGGAATTTGTTCACAACCCTTGCATTGTGTGCACGCCCCACACAAG
ACTGATCCCCCTTCGGTTCATCCCTAAACCTCAAGAGATCTAGGTAGAAT
GTTCACCCAAGACTACATAATGTGAGCCTTTCTTCCATCATCATCACCAC
CACCACACGTACGCATCTCTCGCCCTCTCCTGGGACCAGGAGATTGAACA
AGATGCACCCAAGCAACAAAGCAAGCAATTGAATGCAGGGACATGGGCAG
CTTCTCGTAAGTGTTCGGAACTAACGTCAGTCCCAGACCTTGTGGAATCG
TCAAAGGCAACGGAGGCATACCCCACGGCCCCTGTCATCGTATGGTCGGA
GTATATGGACTTAGCTCCTGGGGATGTGGTTGTAACGGTGGAACACTGCC
ATGAATGCCATCGCCATCGTTCCACGACACGCCATGAGGAGGAGGTGTGG
TGTCAGTAGCACTTCTAGCGACCCCAAGAGGCAGTGTTGCATCGAAAGCG
AGATAATGAGGCAACGCGTCGATGGCACCAACAACCGCAGTTCAATTCTA
GTCTTGTGCACCGCACTACGAGCGAATGGTTTCCTTCGATGTCGGCGCCA
AGGATCAAGGCGATGTCCATTTCTTTAATCAAACGGTGCATCATTGTGCT
GATGGATACAAAGATGGCAACTTTGGAGTGACACGTTGATCCTTGGGAAG
GATCCTGGATTTTTCTCTTGTAAGCTGGAGTAATAAACATTGAGCGAATA
GTCAGCGCCGACTAATAGCTCAGTGCTTAGTACTTCAACGGGTAATGGTG
TCATGTATATCGTCGCACCGCCCCACAATCACCCACGGCACCCGGGCATG
AATTATCCGCGGCAGCTCAACAGCTATTGCGTCACGAAAAGACGTCGGCG
GCAGTTGGTCAACATTTTGAAGCGACCAAATAAATTTTGATTACTTACCG
ATGTCCCCTAGCCCTTTCCACTGCAACATCATCCATCGCGCGATCAACTA
ACATGTACGAGGCGTGGCGCGTGTACCGTACCCACAACCCCATCGTTTTT
AGGAACCTATCCAACTTTTCCCCCCAAAACACCAATGCAGATACGCCTGA
AATGCCTCTCGTCCGTTCCCTATTCAATCACCCCGCTACCTCCCCACCAC
GGCAACCCATCCCCTCGCATGTTTGCGCGTAACGTTTCCTTGGCCAAAAG
GGGTATGTACGGCACGCGAACGCTGTCAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig154:28123..30053-

>mRNA_H-paniculata_contig154.3165.1 ID=mRNA_H-paniculata_contig154.3165.1|Name=mRNA_H-paniculata_contig154.3165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig154:28123..30053- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTCTTGCATGAGAGAAAGGATTTCTTGCATGAGAGAAAGGAGATTGA
ACAAGATGCACCCAAGCAACAAAGCAAGCAATTGAATGCAGGGACATGGG
CAGCTTCTCGTAAGTGTTCGGAACTAACGTCAGTCCCAGACCTTGTGGAA
TCGTCAAAGGCAACGGAGGCATACCCCACGGCCCCTGTCATCGTATGGTC
GGAGTATATGGACTTAGCTCCTGGGGATGTGGTTGTAACGGTGGAACACT
GCCATGAATGCCATCGCCATCGTTCCACGACACGCCATGAGGAGGAGGAG
ATTGAACAAGATGCACCCAAGCAACAAAGCAAGCAATTGAATGCAGGGAC
ATGGGCAGCTTCTCGTAAGTGTTCGGAACTAACGTCAGTCCCAGACCTTG
TGGAATCGTCAAAGGCAACGGAGGCATACCCCACGGCCCCTGTCATCGTA
TGGTCGGAGTATATGGACTTAGCTCCTGGGGATGTGGTTGTAACGGTGGA
ACACTGCCATGAATGCCATCGCCATCGTTCCACGACACGCCATGAGGAGG
AGGGGTATGTACGGCACGCGAACGCTGTCAAAGGGTATGTACGGCACGCG
AACGCTGTCAAA
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