mRNA_H-paniculata_contig154.3163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig154.3163.1 vs. uniprot
Match: D7FXT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT9_ECTSI) HSP 1 Score: 464 bits (1194), Expect = 9.180e-142 Identity = 373/1008 (37.00%), Postives = 511/1008 (50.69%), Query Frame = 1
Query: 541 MAGRVVVEGAQTPRGVVIEAYVAASSETCYLPLSVEDLQIFFACEKDKLEVGMKNAMLEELVKMIYFDYTVQLEVKDMTSPGGIRLQSHHYSDRESWSCLEGRRQSDYDLHWESRETNVRLTGNIGNGDTIGCSNSERVLADIESVKPTGES*GVVSSNKYFLQNRSRTRRVVHGESRTHGVH---RQTFAKAY-GGRVPGERDRPL----DERAVWITQTLRAGMNHNLSLSQVQAPNSVQIESTTRPAEQSLGRSQHVSKRLSSVFGKGAGSGATPTCYRPDVSSSKASAASSTVRSPNGRTAALTRRSNGQEIETPKLA--RNDTVKISFTCR--ITTDGEKHSSAKKGRDDGRLRVKAFDLLVDIYKKQQREAEAQKEANLKAWLAIKKRLRGLTLGTVVRVSGRLLTLMVYEPSDQPGNCKMTLWHPPSGGTFSVTVGVRTIAQASL---VRSPPEEWTLRQRRRIFRQVIRKQCQLVPVEEGDADGEKCFREARTRM----ERAPGNNEIEGEQGRGENEGEKYTDVL-DTQKKSVAGGKKRLFVCVIRCLGRDSTTASVPDLSTAPESMRVLYSRRRHQLQQPPLKDHRLAW----------------KRNANVDPIPNENGE-QQMSELSNHSEGGRQD---REPGPAE-QNVFRRTPFRGK--------------RPRRECGRGVRLCSGVAKVGGRRGVYSLLRGNWAGAERDFCVDWHTPVGFCAPLLGHVAPDTTFTIFLNLDDVAMLTKGTDLLEAAEQWNAAGPV------GQEGEPDGDKLPAGLPVELSQSQQPTDDLVGAGGDDVRKKDDSISSLRSPQKPLYRGQSTAQEFVALCSEEAWDLVARQILSQCYW---MIPATAHPASAQETELHLDST----DEPIFAEL----------SGTTSALDAGH-----TFINT-NLRLAVATCIFRRVLKVLVVYCQPMLLLVVVSQWHERLVVRCYDFASGNIREAERPDPVADKALIQEFR 3312
MAGRVVVEGA PR ++IEAY+ ASSET L ++V++L+ F E +K+ VG K+ M+ ELVKM+YFDYT++ E D T PGGIR S+HYSDRE W+CL RR +D+DLHWESR + + G G G T G + + + D S G + + + S + G HG + + A A RV G DERAVWITQ L+ N+ V A E + +V G S TP + A T ++ G+ + +A R+ T + T R T G + ++A+ R + RV+AFD+ ++ YK+++R AE KEA L+AWLAIKKR RGLTLGTV++VSGRLLTLMVYE DQPGN + +PPSG TF +++G+ +A + V S PE WTLRQ+R++ + VI+K +LV VEE D ++ +R R E E++ E EN+ V + K A G ++LF C IRCLGRDST A +L TA S R+ HQLQQP KDHR A+ + + V + +G Q + S+H G D +E +E Q R +G+ R RRECGRG RLC G+A+VGG RG+YSLLR NWAGAE D+ ++W+ P F G V TTFT+ L D+ +LT+G+D+L AAE+W++ V G DG K G + + LVG G ++ R S + ++ + + ++ L EAW+ VAR+IL +CYW + A + T D T D+P E SG + G T ++T ++RLAV TC+FRRV+KV+ + PM LLVVVSQWH+ LVVRCYDF G IR+AER D D ALI EF+
Sbjct: 1 MAGRVVVEGAAYPRCLLIEAYIPASSETIQLYVAVDELERLFRDEPEKMWVGRKDDMVLELVKMLYFDYTLETEEADSTLPGGIRFTSYHYSDREPWTCLHARRDADFDLHWESRNSGAGI-GLPGAGPTAGAAATPANIGDERSEATEGTCVSAQTKGRCSGEG-STSDACTSGPVHAHGTNPNDNNSIATAGPASRVAGACSAAAACTPDERAVWITQRLQVRDTQNMLDIDVAACG----ELSDGXXXXXXXXXXXXXXXXGAVSGHPIKSRNTPAAATAAMQEFVAXXXXXXXXXXXXXXXXATAKTQGRSGRSTLVATVRSATSRKWQTNRDAAQTCGPRANAARPNRAKRKTRVRAFDVRIEEYKEERRHAEEAKEAKLQAWLAIKKRFRGLTLGTVIQVSGRLLTLMVYEFPDQPGNLNVIFTNPPSGATFRLSLGIGAVAAQARHVSVASSPETWTLRQKRKVIKTVIQKNSKLVLVEE-DETRDRVPESSRPRPSHSEEGIDNGEEVDAEALSMENDPWNGLSVGGEGISKHRACGVRQLF-CAIRCLGRDSTAAYAHELPTA--SRGFTRPRKAHQLQQPNPKDHRRAFSLVSSRSTHSASVGVAEPSVGVAAADHVSGSAMQGNPASSHGVDGSADDSWKELTDSEGQGATRSRDVKGRAGTYGCVVRVRIRPRQRRECGRGHRLCGGIARVGGARGIYSLLRDNWAGAEDDYLLEWYAPNDFRPLRQGPVEAHTTFTLELLHQDLNLLTEGSDILAAAEEWSSKRDVTTTAFGGAHPTRDGAKKSTGATTATTALSD--NGLVGRG-EETRVLAPSSGAAQAEEHGEIKARNRDDVVPPLTESEAWERVAREILRKCYWGSNIQGGVARDPTTVATRPDYDQTTSGSDQPSLEECITSQVTRTPPSGLMAETAVGQPGRPLTGVDTADVRLAVGTCVFRRVIKVMGLGIPPMYLLVVVSQWHDALVVRCYDFIGGEIRQAERLDRSRDSALISEFK 995
BLAST of mRNA_H-paniculata_contig154.3163.1 vs. uniprot
Match: A0A6H5L4P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P3_9PHAE) HSP 1 Score: 435 bits (1118), Expect = 7.770e-132 Identity = 366/1015 (36.06%), Postives = 487/1015 (47.98%), Query Frame = 1
Query: 538 GMAGRVVVEGAQTPRGVVIEAYVAASSETCYLPLSVEDLQIFFACEKDKLEVGMKNAMLEELVKMIYFDYTVQLEVKDMTSPGGIRLQSHHYSDRESWSCLEGRRQSDYDLHWESRETNVRLTGNIGNGDTIGCSNSERVLADIESVKPTGES*GVVSSNKYFLQNRSRTRRVVHGESRTHGVHRQTF--------AKAYGGRVPGERDRPLDERAVWITQTLRAGMNHNLSLSQVQAPNSVQIESTTRPAEQSLGRSQHVSKRLSSVFGKGAGSGATPTCYRPDVSSSKASAASSTVRSPNGRTAALTRRSNGQEIETPKLARNDTVKISFTCRITTDGEKHSSAKKGRDDGRLRVKAFDLLVDIYKKQQREAEAQKEANLKAWLAIKKRLRGLTLGTVVRVSGRLLTLMVYEPSDQPGNCKMTLWHPPSGGTFSVTVGVRTIAQASL---VRSPPEEWTLRQRRRIFRQVIRKQCQLVPVEEGDADGE---------KCFREART--RMERAPGNNEIEGEQGRGENEGEKYTDVL-DTQKKSVAGGKKRLFVCVIRCLGRDSTTASVPDLSTAPESMRVLYSRRRHQLQQPPLKDHR----LAWKRNANVDPI----PNEN---GEQ------QMSELSNHSEGGRQDR----------EPGPAEQNVFRRTPFRG--------KRPRRECGRGVRLCSGVAKVGGRRGVYSLLRGNWAGAERDFCVDWHTPVGFCAPLLGHVAPDTTFTIFLNLDDVAMLTKGTDLLEAAEQWNAAGPVGQE---GEP---DGDKLPAGLPVELSQSQQPTDDLVGAGGDDVRKKDDSISSLRSPQKPLYRGQSTAQEFVALCSEEAWDLVARQILSQCYW---MIPATAHPASAQETELHLDST----DEPIFAEL----------SGTTSALDAG---------HTFINTNLRLAVATCIFRRVLKVLVVYCQPMLLLVVVSQWHERLVVRCYDFASGNIREAERPDPVADKALIQEFR 3312
GMAGRVVVEGA PR V+IEAY+ ASSET L +SV++L+ F + +KL VG K M+ ELVKM+YFDYT++ E D T P GIR S+HYSDRE W+CL R SD+DLHWESR T G G T G + + + D +S G + Y + S + G HG A+ G ERAVWITQ L+ N+ V A E S G SV A T + S R+ G TAA RS ++ + S T G + ++A R + RV+AFD+ ++ YK+++R AE KEA L+AWLA+KKR RGLTLGTV++VSGRLLTLMVYE DQPGN + PPSG TF +++G+ +A + V S + WTLRQ+R++ ++VI+ +LV VEE + + F + R R E++ E EN+ V D K A G +++F C IRCLGRDST A L TA S HQLQQP KDHR L R+ + + P+ G+Q Q + S+H G D E ++V R G RRECGRG RLC G+A+V G RG+YSLLRGNWAGAE D+ +DW+ P F G + T FT+ L D+ +LT+G+D+ AAE+W++ V G P DG G + + LVG G ++ RK S + ++ + + ++ L EAW+ VAR+IL +CYW + A + T D T D+P E SG + G HT ++RL V TC+FRRV+KV+ + PM LLVVVSQWH+ LVVRCYDF G IR+AER D D ALI EF+
Sbjct: 2 GMAGRVVVEGAAYPRCVLIEAYIPASSETIQLYVSVDELERLFRDDSEKLWVGRKEDMVLELVKMLYFDYTLETEEADSTLPDGIRFTSYHYSDREPWTCLHALRDSDFDLHWESRNTGAG-PGFPGAEPTAGAAATPAKIGDEQSEGTEGTCVSAQTRGGYRGEG-SPSDACTSGPIHAHGTSSNDSKSIATAGPARRVAGACRAAAACTPAERAVWITQRLQVRNTQNMLDVDVAAC-----------GELSDGXXXXXXXXXXSV--------AAGTVSGHPIKS----------RNGPGATAATQGRSGRSTLDATVHSVASRKWHSKRDAAQTRGHRANAAGPNRAKRKTRVRAFDVRIEEYKEERRHAEEAKEAKLQAWLAVKKRFRGLTLGTVIQVSGRLLTLMVYEFPDQPGNLNVVFTTPPSGATFRLSLGIGAVAAQARHVSVASSTDTWTLRQKRKVIKKVIQNNSKLVLVEEDETRDRAPERRDNRFRAFSDVRPFETSRRDYNGEEVDAEAFSMENDPWNGLSVGGDGISKHRACGVRQVF-CAIRCLGRDSTAAYARALPTA--SRGFTRPCNAHQLQQPSPKDHRRTFSLMSSRSTHTALVGVAEPSVGVAVGDQVSGTAMQGNPASSHGVDGSADNSWKDLTDDESEGATRSRDVTERAETYGCGVRVXXXXXXRRECGRGRRLCGGIARVRGARGIYSLLRGNWAGAEDDYLLDWYQPNDFRPLRQGPIETHTAFTLKLLAQDLNLLTEGSDVFPAAEEWSSKRDVATTTFGGAPPTRDGANNSTGATTATTALSD--NGLVGRG-EETRKLALSPGAAQAEEHGEPKARNRDGAVPPLTESEAWERVAREILRKCYWGSDVQGGVAGDPTIVATRPDYDQTTSGQDQPSLEECITSQATRTPPSGLMTETAMGQPGRPLAGVHT---ADVRLVVGTCVFRRVIKVMGLGIPPMYLLVVVSQWHDALVVRCYDFIGGEIRQAERLDRSRDSALISEFK 976
BLAST of mRNA_H-paniculata_contig154.3163.1 vs. uniprot
Match: D7FXT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT8_ECTSI) HSP 1 Score: 105 bits (263), Expect = 2.550e-22 Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 1 LGLTAEALGKSGVVLNRSGRVTIVNQYMLAFDEIWAADIPALRPIRLDLPRPSVIDER------------------------GPVYLMPMHRRGKGIEGRTETLFPEPPPAARDSDSVTAQRDK 300
+GLTAEAL + VVL+RSGRV +V +++LAFDE+W AD+PALRP++L+L R GPV+LMPMHR+GKG++GR + LF EPP RD + T R++
Sbjct: 64 VGLTAEALARPAVVLDRSGRVILVEKHLLAFDEVWPADLPALRPLQLNLRRSCGAGRANGDVGHSDNNARKGEGQSGGGRFGGPVFLMPMHRKGKGVQGREDELFAEPPRLRRDEEETTMNRNR 187
BLAST of mRNA_H-paniculata_contig154.3163.1 vs. uniprot
Match: A0A7S2EP25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EP25_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 2.050e-7 Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 478 LWRGVRLISRTHAIITVFGVGMAGRVVVEGAQTPRGVVIEAYVAASSETCYLPLSVEDLQIFFACEKDKLEVGMKNAMLEELVKMIYF 741
+W+G +IS + II+V GVG+AGRV EGAQ PR +++EAY S + +++E ++ F+ L+ G+K M+ EL M++F
Sbjct: 25 IWKGGSMISNAYCIISVIGVGIAGRVFAEGAQNPRSLLLEAYELDSCALHQVWVNMECIKDLFSDSLYYLKAGLKKEMIMELCTMLHF 112
BLAST of mRNA_H-paniculata_contig154.3163.1 vs. uniprot
Match: A0A8K1FNM1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNM1_PYTOL) HSP 1 Score: 65.5 bits (158), Expect = 5.980e-7 Identity = 73/264 (27.65%), Postives = 119/264 (45.08%), Query Frame = 1
Query: 7 LTAEALGKSGVVLNRSGRVTIVNQYMLAFDEIWAADIPALRPIRLDLP---RPSVIDERGPVYLMPMHRRGKGIEGRTETLFPEPPPAARDSDSVTAQRDKFCFEDE-------SRYDRAKAGARVGKSSSSAPQ--RRWRICKLWATGVETWQWEWSPEAQMMLGRLALWRGVRLISRTHAIITVFGVGMAGRVVVEGAQ-----TPRGVVIEAYVAASSETCYLPLSVEDLQIFFACEKDKLEVGMKNAMLEELVKMIYFDY 747
L L + +VLN G T+ + +L + E+ + P RP L LP R V + + LMP H ++ R P AA R+K EDE + D+ K R ++ P+ RRW KL G +T P+ + G + L +IS ++ I++++GVG+ GR+ EG T R + +EAY + S L +++ DL+ F + L G K+ ML+++V ++YF+Y
Sbjct: 76 LQLRVLERQTLVLNVHGEPTLGTEALLQYQEVPSP--PRERPSPLHLPFVPRKCVAGDE--LALMPCH----SLQYRLV-----PSLAAEQWREPIRDRNKNWAEDELNVLLMLATKDQCKM-TRYTTQQTTFPRKWRRWESQKLHIHGGDT-----KPKISGVPGEVLLRNLGAMISESYCIVSIYGVGLYGRLYSEGLAVDRNGTQRHLRVEAYEPSISRRYVLLVTLSDLERVFVARPELLVAGKKHEMLKKVVSLLYFEY 320
BLAST of mRNA_H-paniculata_contig154.3163.1 vs. uniprot
Match: A0A2R5GDM4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDM4_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 9.460e-7 Identity = 48/170 (28.24%), Postives = 84/170 (49.41%), Query Frame = 1
Query: 457 MMLGRLALWRGVRLISRTHAIITVFGVGMAGRVVVEGAQTPRGVVIEAYVAASSETCYLPLSVEDLQIFFACEKDKLEVGMKNAMLEELVKMIYFDYTV-QLEVKDMTSPGGIRLQSHHYSDRESWSCLEGRRQSDYDLHWESRETNVR---LTGNIGNGDTIGCSNSER 954
++L +L L R ++ +++V+G+G+AGR+ ++ A+ PR V IEAY + +T L +++ DL+ FA LEVG K ++ L+ M+Y D V QL + P ++ RE+ + + R L SR +V +G G++ G +R
Sbjct: 232 VLLSKLLLLRQGAVLGTQAMVLSVYGMGIAGRIYIKPARFPRHVRIEAYCPRTRQTYSLRVNLSDLEELFADRPHLLEVGHKKSLCRALLDMVYMDEEVMQLCIARKRQPERRQVLQSRRQRREARALEQTR------LERISRGEDVDGLLAQARVGTGESTGARKGKR 395
BLAST of mRNA_H-paniculata_contig154.3163.1 vs. uniprot
Match: A0A2D4BWT7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWT7_PYTIN) HSP 1 Score: 58.9 bits (141), Expect = 6.090e-5 Identity = 30/89 (33.71%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 496 LISRTHAIITVFGVGMAGRVVVEGAQT-----PRGVVIEAYVAASSETCYLPLSVEDLQIFFACEKDKLEVGMKNAMLEELVKMIYFDY 747
+ISRT+ +++VFGVG+ GR+ EG R + ++AY A S T L +S+ DL+ + L+ G K A+L++++ +++F+Y
Sbjct: 208 MISRTYCVVSVFGVGLYGRMYSEGLADRHVGQQRCLRVQAYDPARSHTFSLDVSLRDLEWLLQSRPELLQAGKKPALLQKIIALLFFEY 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig154.3163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig154.3163.1 >prot_H-paniculata_contig154.3163.1 ID=prot_H-paniculata_contig154.3163.1|Name=mRNA_H-paniculata_contig154.3163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=707bp MNHNLSLSQVQAPNSVQIESTTRPAEQSLGRSQHVSKRLSSVFGKGAGSGback to top mRNA from alignment at H-paniculata_contig154:4083..20240+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig154.3163.1 ID=mRNA_H-paniculata_contig154.3163.1|Name=mRNA_H-paniculata_contig154.3163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16158bp|location=Sequence derived from alignment at H-paniculata_contig154:4083..20240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig154:4083..20240+ >mRNA_H-paniculata_contig154.3163.1 ID=mRNA_H-paniculata_contig154.3163.1|Name=mRNA_H-paniculata_contig154.3163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4242bp|location=Sequence derived from alignment at H-paniculata_contig154:4083..20240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |