mRNA_H-paniculata_contig154.3164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig154.3164.1
Unique NamemRNA_H-paniculata_contig154.3164.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig154.3164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig154contigH-paniculata_contig154:25283..26253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929232.484615-CDS-H-paniculata_contig154:25282..256151622929232.484615-CDS-H-paniculata_contig154:25282..25615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 25283..25615 -
1691480780.4802384-CDS-H-paniculata_contig154:25282..256151691480780.4802384-CDS-H-paniculata_contig154:25282..25615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 25283..25615 -
1622929232.4988544-CDS-H-paniculata_contig154:26193..262531622929232.4988544-CDS-H-paniculata_contig154:26193..26253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 26194..26253 -
1691480780.4900837-CDS-H-paniculata_contig154:26193..262531691480780.4900837-CDS-H-paniculata_contig154:26193..26253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig154 26194..26253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig154.3164.1prot_H-paniculata_contig154.3164.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig154 25283..26253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig154.3164.1

>prot_H-paniculata_contig154.3164.1 ID=prot_H-paniculata_contig154.3164.1|Name=mRNA_H-paniculata_contig154.3164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
SAKGALEIQNKYSYGPDIVQRNPEFLSGEGINNGHWRPSQDKPLAVATVV
HAECGTTIDNGSLSTPPDAAEERHSSSDRTKKAFKIMANNCSPLSDNDRV
RIEDGCRDDNRQIRIDSSSELRLVRDDAPPR
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mRNA from alignment at H-paniculata_contig154:25283..26253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig154.3164.1 ID=mRNA_H-paniculata_contig154.3164.1|Name=mRNA_H-paniculata_contig154.3164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=971bp|location=Sequence derived from alignment at H-paniculata_contig154:25283..26253- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCGAAGGGAGCGCTCGAAATCCAAAACAAGTACTCGTATGGGCCAGA
CATCGTGCAGGTGTGTGGTATTGTTGGCGATTTGTCGACCGTTTGTACGT
GTACATCAGGGTAGGCATGTAGGCTTGCTTGCGGTTTGAGGGAGTATTGC
TAATACCTCAGAGTGTTTGCAGAGGTGATGCAAGAGTTGGGGCGTAGGTC
CAAAACATTGTGTCAGCGACTCGCGGTTTCTTAAACGCCTTCTTCTTTCG
ATAGCCGCAAGCTGGCCGGAACCCCAACTAAACAAACTATACGGAACCGG
TTGACTCGTGCCCAGTTGCATTTCCATGAAGGAACCAAGCAGCGTTATTG
ACCAACGCGCTGCTGCAAAATGTCTCACAAAGGGCGGCCTCCGCAAAATG
GTAGTTCTCCGTGTCGCTGCAATCAGCTTCAATGAAAGCTTGGAAAATAA
TGCAGTGCGCTACAACTAAAGTGGTTGTTACAACACAACGCTACGCGCCG
TCGTGGAGATGACACGAGCACCCCCCTTAGCCTGTTATGCACACATACCC
TCACACGCCCCCCTTGCTTTCCTCTCTGACGCCCGAAACCTCTTGACCAA
TTTCATGCCGATGGACCGTGCCTTGCATGCCCTACCAGCGGAATCCAGAA
TTTTTGAGCGGTGAGGGTATCAACAATGGGCATTGGCGACCGTCTCAGGA
TAAACCACTCGCCGTAGCAACCGTAGTTCATGCGGAATGTGGCACGACGA
TTGACAACGGTAGTTTGTCCACCCCCCCCGACGCTGCAGAGGAACGCCAT
TCTTCATCTGACAGAACAAAAAAGGCCTTTAAAATTATGGCTAATAATTG
CAGTCCTCTCAGCGACAATGATAGAGTTCGAATTGAGGATGGATGCCGTG
ATGACAACCGACAAATCAGAATAGATAGTAGTTCAGAACTTCGGCTGGTA
AGAGACGATGCTCCACCCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig154:25283..26253-

>mRNA_H-paniculata_contig154.3164.1 ID=mRNA_H-paniculata_contig154.3164.1|Name=mRNA_H-paniculata_contig154.3164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig154:25283..26253- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCGAAGGGAGCGCTCGAAATCCAAAACAAGTACTCGTATGGGCCAGA
CATCGTGCAGTCGGCGAAGGGAGCGCTCGAAATCCAAAACAAGTACTCGT
ATGGGCCAGACATCGTGCAGCGGAATCCAGAATTTTTGAGCGGTGAGGGT
ATCAACAATGGGCATTGGCGACCGTCTCAGGATAAACCACTCGCCGTAGC
AACCGTAGTTCATGCGGAATGTGGCACGACGATTGACAACGGTAGTTTGT
CCACCCCCCCCGACGCTGCAGAGGAACGCCATTCTTCATCTGACAGAACA
AAAAAGGCCTTTAAAATTATGGCTAATAATTGCAGTCCTCTCAGCGACAA
TGATAGAGTTCGAATTGAGGATGGATGCCGTGATGACAACCGACAAATCA
GAATAGATAGTAGTTCAGAACTTCGGCTGGTAAGAGACGATGCTCCACCC
CGCCGGAATCCAGAATTTTTGAGCGGTGAGGGTATCAACAATGGGCATTG
GCGACCGTCTCAGGATAAACCACTCGCCGTAGCAACCGTAGTTCATGCGG
AATGTGGCACGACGATTGACAACGGTAGTTTGTCCACCCCCCCCGACGCT
GCAGAGGAACGCCATTCTTCATCTGACAGAACAAAAAAGGCCTTTAAAAT
TATGGCTAATAATTGCAGTCCTCTCAGCGACAATGATAGAGTTCGAATTG
AGGATGGATGCCGTGATGACAACCGACAAATCAGAATAGATAGTAGTTCA
GAACTTCGGCTGGTAAGAGACGATGCTCCACCCCGC
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