mRNA_H-paniculata_contig15231.3083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0K175_9PHAE (Ribosomal protein S4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K175_9PHAE) HSP 1 Score: 414 bits (1065), Expect = 1.530e-145 Identity = 197/236 (83.47%), Postives = 219/236 (92.80%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRRKIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKVNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 MKFKSRYKSCLW+RKDVWG LLKKK+TFLRVKWDRMMAILSSQ+RR+ GK CKDY +VKPS+R NQVYN+VRWGFRNSL NRLCARRFYGD+SHKSFRKLCKV++ +L Q LESRLDINL RLEFF+SIY SRQAILHGKILVNNKKVTFGHF LKFGD++EFCPSFRPF++DYL RSK+R++SDRLI+LS+RWVLCDYSNLFFIING IKPFLFYPYRF+LDELISFANYGY Sbjct: 1 MKFKSRYKSCLWARKDVWGNLLKKKHTFLRVKWDRMMAILSSQRRRRRGKP-CKDYGIVKPSSRSNQVYNYVRWGFRNSLGNRLCARRFYGDVSHKSFRKLCKVDSVRELAQVLESRLDINLCRLEFFSSIYCSRQAILHGKILVNNKKVTFGHFLLKFGDIVEFCPSFRPFMHDYLVYRSKFRYRSDRLIRLSSRWVLCDYSNLFFIINGSIKPFLFYPYRFELDELISFANYGY 235
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A4Y5T8N1_9PHAE (Ribosomal protein S4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8N1_9PHAE) HSP 1 Score: 253 bits (645), Expect = 1.270e-81 Identity = 125/237 (52.74%), Postives = 168/237 (70.89%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRRKIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKVNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKYRFKSDRL-IKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 MKFK+RYKSCLWS+ D+WG LLK++N+FLRVKWDR++ L S++RR+ ++LCKDY LVKPS+RPNQ Y RW FRNSLSNRLC RRFYGD+S K+ ++LC++ + ++LESRLDINLYRL F S+Y S+QAILHGK+LVN +K+TF F L+ GD++EF +FR + + R DRL + + W+ DY +L FI G I +FYP+R + DE+ + Y Y Sbjct: 1 MKFKARYKSCLWSKTDIWGGLLKRRNSFLRVKWDRIIGTLISKKRRR-HQRLCKDYRLVKPSSRPNQPYKFPRWAFRNSLSNRLCLRRFYGDLSSKTVQRLCRIKKNKKFIRSLESRLDINLYRLGFLGSVYESKQAILHGKVLVNGRKITFDQFLLQSGDIVEFSSNFRSSIRSGILSRRCGINYVDRLRVHPTPDWLHTDYCSLSFIFVGDITFSMFYPFRVEFDEIRCSSRYKY 236
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: Q2TUD0_DICDH (Ribosomal protein S4 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUD0_DICDH) HSP 1 Score: 252 bits (643), Expect = 2.640e-81 Identity = 126/238 (52.94%), Postives = 167/238 (70.17%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRRKIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLC-KVNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKYRFKSDRL-IKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 MKFKS YKSC WS+ D+WG LLKKKN+FL VKWDR++ +LSS++RR+ +KLCK+Y+LV P++RPNQ Y + RW F+NSLSN +C RRFYGD+ + + +C K + LESRL INLYRL FF+S++ S+QAILHGK+LVN K+TF H+ LK GD+IEFCP FR + + R K SDRL + + W+ DYSNL FII +FYP+R D DE+++ + Y Y Sbjct: 1 MKFKSIYKSCFWSKTDIWGCLLKKKNSFLHVKWDRILGVLSSRKRRRY-QKLCKNYNLVGPTSRPNQPYKYPRWYFKNSLSNGVCVRRFYGDLRFEMLKSMCNKAKTVDSFMKCLESRLGINLYRLGFFSSVFESKQAILHGKVLVNGVKITFDHYILKPGDLIEFCPKFRSKLKSRMITRRKNINYSDRLKLNPTPFWIQTDYSNLSFIILCETNNAVFYPFRIDFDEVLNSSKYRY 237
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0FC93_9PHAE (Ribosomal protein S4 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FC93_9PHAE) HSP 1 Score: 236 bits (601), Expect = 1.520e-74 Identity = 125/264 (47.35%), Postives = 164/264 (62.12%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKVNNTGQ-----LCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPS---------------FRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 M+FK RYKSCLW+R D+WG LL K+ TFLR KWD ++ +LSSQ+RR + LC DY+ +KP RPNQ++ + R +RN+LS +C +RFYGD+S K+F+ CK +G+ L + LE RLDI LYRL FF SIY SRQAILH ++LVN KK+ +G F L+ GD +EFCPS FR F R R RFK D + + +W+ DYSNL F I+ + P +FYP+R DLDE I + YGY Sbjct: 1 MRFKHRYKSCLWARTDIWGDLLSKEKTFLRPKWDSIIGVLSSQKRRHRPLTNINRYRYPLCHDYNFLKPRVRPNQIFKYNRVSYRNTLSLLMCVKRFYGDLSTKTFKIFCKRLGSGKIPSKKLIEVLEGRLDICLYRLGFFHSIYYSRQAILHSQVLVNGKKIDYGGFILQKGDYVEFCPSQRNAIRVRLVARYKRFRSFYIKLERWRLSNRFKFDLHLHPTPKWIHTDYSNLSFFISADVCPPIFYPFRVDLDEAIWASKYGY 264
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0K0K8_9PHAE (Ribosomal protein S4 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0K8_9PHAE) HSP 1 Score: 231 bits (590), Expect = 7.040e-73 Identity = 126/264 (47.73%), Postives = 163/264 (61.74%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRP-----FVYDYLRQRSKY----------RFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 M+FK RYKSCLWSR D+WG LL K TFLR KWD ++ +LSSQ+RR + LC DY+ +KP RPNQ++ + R +RN+LS LC RRFYGD++HK+F+ CK N +L LE RLD++LYRL FF SIY SRQAILH K+LVN K++ G F L+ GD +EFCPS R V Y R RS Y RFK D + + +WV DYSNL FI++ + + YP+R D+DE + + YGY Sbjct: 1 MRFKHRYKSCLWSRTDIWGDLLSKDKTFLRPKWDSIIGVLSSQKRRHRPLANINRYRYPLCHDYNFLKPRVRPNQIFKYNRISYRNTLSLLLCIRRFYGDLNHKAFKNFCKSLVSLKNPPQKLIGALEGRLDVSLYRLGFFHSIYYSRQAILHSKVLVNGKRIGHGGFILQKGDFVEFCPSQRSSIRARLVGRYKRFRSSYVKLERWRLSNRFKFDLHLHPTPKWVQTDYSNLSFIMSSDVCVPVIYPFRVDVDEALWCSKYGY 264
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A516ICH2_9PHAE (Ribosomal protein S4 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICH2_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.410e-72 Identity = 119/264 (45.08%), Postives = 166/264 (62.88%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCK-----VNNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPS---------------FRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 M+FK RYKSCLWS+ D+WG LL K+ TFLR KWD ++ +L SQ+RR + LC DY+ +KP RPNQ++ + + G++N+L+ LC RRFYGD+SHK F++ C+ + + +L ++LE RLDI+LYRL FF SIY SRQAILH K+LVN KK+ +G F L+ GD IEFCPS FR F R R RFK + ++ + W+ DYSNL F+++ + + YP+R D+DE + + YGY Sbjct: 1 MRFKHRYKSCLWSKTDIWGDLLSKEKTFLRPKWDNIIGVLESQKRRHRPLANINRYRHPLCHDYNFLKPRVRPNQIFKYNKVGYKNTLAILLCVRRFYGDLSHKGFKRFCQPLVAFTDPSQKLIKSLERRLDISLYRLGFFHSIYYSRQAILHNKVLVNGKKIGYGGFILQKGDFIEFCPSQRSAIKTRLMARYKRFRSFHVKLERWRLSNRFKFELHLQPTPTWIQTDYSNLSFMLSSDVCVPVLYPFRVDIDEALWASKYGY 264
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: W5RG02_COSCS (Ribosomal protein S4 n=9 Tax=Laminariales TaxID=2886 RepID=W5RG02_COSCS) HSP 1 Score: 231 bits (588), Expect = 1.410e-72 Identity = 123/264 (46.59%), Postives = 163/264 (61.74%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPS---------------FRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 M+FK RYKSCLWSR D+WG LL K+ TFLR KWD ++ +L SQ+RR + LC DY+ VKP RPNQ++ + R +RN+LS LC RRFYGD+SHK+F++ C+ +L +LE RLDI+LYRL FF SIY SRQAILH K+LVN +K+ +G F L+ GD +EFCPS FR F R R RFK + + + +WV DYSNL FI++ I + YP+R D+DE + + YG+ Sbjct: 1 MRFKHRYKSCLWSRTDIWGDLLSKEKTFLRPKWDSIIGVLGSQKRRHRPLANINRYRHPLCHDYNFVKPRVRPNQIFKYNRLSYRNTLSLLLCIRRFYGDLSHKAFKRFCQPLVSLKTPAQKLIGSLEGRLDISLYRLGFFHSIYYSRQAILHNKVLVNGEKIGYGGFILQKGDFVEFCPSQRSAIRARLVARYKRFRSFHVKLERWRLSNRFKFELYLYPTPKWVQTDYSNLSFILSSDICAPVMYPFRVDVDEALWASRYGH 264
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0JZU7_9PHAE (Ribosomal protein S4 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0JZU7_9PHAE) HSP 1 Score: 230 bits (587), Expect = 2.000e-72 Identity = 123/264 (46.59%), Postives = 162/264 (61.36%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPS---------------FRPFVYDYLRQRSKYRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 M+FK +YKSCLW R D+WG LL K+ TFLR KWD ++ +L SQ+RR + LC DY+ VKP RPNQ++ + R +RN+LS LC RRFYGD+SHK+F+K C+ N T L +LE RLDI+LYRL FF SIY SRQAILH K+LVN KK+ G F L+ GD +EFC S FR F R R RFK + ++ + +W+ DYSNL FI++ + + YP+R D+DE + + YGY Sbjct: 1 MRFKHKYKSCLWLRTDIWGDLLSKEKTFLRPKWDSIIGVLGSQKRRHRPLANINRYRHPLCHDYNFVKPRVRPNQIFKYNRISYRNTLSLLLCIRRFYGDLSHKAFKKFCRPLVSLKNPTKNLIGSLEGRLDISLYRLGFFHSIYYSRQAILHNKVLVNGKKIADGGFILQKGDYVEFCFSQRSAIRARLVARYKRFRSFYVKLERWRLSNRFKFELHLQPTPKWIQTDYSNLSFILSSNVCAPVIYPFRVDIDEALWASKYGY 264
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A3G5FPT6_9PHAE (Ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPT6_9PHAE) HSP 1 Score: 226 bits (576), Expect = 9.250e-71 Identity = 120/264 (45.45%), Postives = 170/264 (64.39%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRP-----FVYDYLRQRSK----------YRFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 M+FK+RYKSCLWSR ++WG LL K++TFLR KWD ++AIL SQ+RR + +C +Y L+KP TR NQV+ + R+G+RN+LS C RRFYGD+SHK F+ CK + + +L +LE RLD++LYRL FF SIY SRQAILH K+LVN +K+ +G F L+ GD++EFCP+ R V Y R RS +R+K + ++ + +W+ DYSNL FI++ + + YP+R + DE + + YGY Sbjct: 1 MRFKNRYKSCLWSRTNIWGDLLAKEHTFLRPKWDTIIAILRSQRRRHRPLVNIYRYRHPICHNYKLLKPRTRANQVFKYNRFGYRNTLSLVFCLRRFYGDLSHKGFKNFCKPFFKLRDPSQRLLSSLEGRLDMSLYRLGFFHSIYYSRQAILHNKVLVNGEKIGYGSFILQKGDLVEFCPTQRSAIRARLVARYKRFRSSMVRLERSNLSHRYKLELHLQPTPKWIQTDYSNLSFILSSDVCVPIVYPFRANFDEALWASKYGY 264
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Match: A0A8F0FCX2_9PHAE (Ribosomal protein S4 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCX2_9PHAE) HSP 1 Score: 226 bits (576), Expect = 9.250e-71 Identity = 121/264 (45.83%), Postives = 163/264 (61.74%), Query Frame = 1 Query: 1 MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRR--------KIGKKLCKDYSLVKPSTRPNQVYNHVRWGFRNSLSNRLCARRFYGDISHKSFRKLCKV-----NNTGQLCQTLESRLDINLYRLEFFTSIYSSRQAILHGKILVNNKKVTFGHFFLKFGDVIEFCPSFRPFVYDYLRQRSKY---------------RFKSDRLIKLSARWVLCDYSNLFFIINGPIKPFLFYPYRFDLDELISFANYGY 708 M+FK RYKSCLWSR D+WG LL K+ TFLR KWD +M IL SQ+RR + LC DY +KP R NQ++ + R G+RN+LS C RRFYGD+SHKSF+K C+ + + +L LE RLDI LYRL FF SI+ SRQAILH K+LVN +K+ +G F L+ GD +EFCP RP + L R K+ RFK + ++ + +W+ DYSNL FI++ + + +P+R D+DE + + YGY Sbjct: 1 MRFKHRYKSCLWSRTDIWGDLLGKEKTFLRPKWDTIMGILGSQKRRHRPLVNINRYRYPLCHDYKFLKPRARANQIFKYNRRGYRNTLSLLFCLRRFYGDLSHKSFKKFCRSMFALKDPSQKLLGALEGRLDITLYRLGFFHSIFYSRQAILHHKVLVNGEKIGYGGFILQKGDYVEFCPLQRPAIRARLLARYKHFRSAEVRLERWRLSPRFKYELHLQPTPKWIHTDYSNLSFILSSEVCVPIMFPFRADVDEALWASKYGY 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15231.3083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15231.3083.1 >prot_H-paniculata_contig15231.3083.1 ID=prot_H-paniculata_contig15231.3083.1|Name=mRNA_H-paniculata_contig15231.3083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp MKFKSRYKSCLWSRKDVWGTLLKKKNTFLRVKWDRMMAILSSQQRRKIGKback to top mRNA from alignment at H-paniculata_contig15231:5455..6165- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15231.3083.1 ID=mRNA_H-paniculata_contig15231.3083.1|Name=mRNA_H-paniculata_contig15231.3083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=711bp|location=Sequence derived from alignment at H-paniculata_contig15231:5455..6165- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15231:5455..6165- >mRNA_H-paniculata_contig15231.3083.1 ID=mRNA_H-paniculata_contig15231.3083.1|Name=mRNA_H-paniculata_contig15231.3083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig15231:5455..6165- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |