mRNA_H-paniculata_contig15106.3029.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15106.3029.1
Unique NamemRNA_H-paniculata_contig15106.3029.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: D7G127_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G127_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.280e-33
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAMVRVMEL 391
            A  WYTVYRKP YQRLKR IE + KD+EKKKAE +    E+K  K+ + + RLE DL   TK+LQ L   +KLVV++ +M VM  IN+SF G VVAKLPFVP SL+Q++SHR L G+DPTDC++  +  L
Sbjct:   22 AYSWYTVYRKPEYQRLKRHIENLVKDVEKKKAEPVGGSVERK-VKNLKALSRLEKDLAEATKDLQALTMSNKLVVAVTLMVVMIAINKSFAGIVVAKLPFVPISLVQKISHRALEGEDPTDCSVAFIFAL 150
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: A0A0A0LGX0_CUCSA (Calcium load-activated calcium channel n=7 Tax=fabids TaxID=91835 RepID=A0A0A0LGX0_CUCSA)

HSP 1 Score: 89.7 bits (221), Expect = 1.580e-17
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAM 373
            A+ W  +YR   Y+ L+  I+K AK LE  K +S  +  +K + K    + R+E  L   +++L      S  VV+LV+  V  ++N  F G VVAKLPF PF L+ ++SHRGL GDDPTDCAM
Sbjct:   31 AISWVLIYRTNSYKTLRSSIDKAAKKLETMKTDSSKITVKKSKTKK---IDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAM 151
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: A0A7J7JEZ9_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JEZ9_BUGNE)

HSP 1 Score: 89.7 bits (221), Expect = 2.120e-17
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAMV 376
             L W  VYR   YQRLK ++EK  K LEK+KA ++    +  ++K  R   RL+ND    +++L      S   +S V MA++ V N  F G VVA LPFVPFSL+Q LSHR LAG+D TDC+ +
Sbjct:   15 CLTWLLVYRTENYQRLKNEVEKQTKKLEKQKA-TISDTGKSAKKKIDRQEERLKND----SRDLNMTKMKSMFAISFVFMALLSVFNSIFDGRVVATLPFVPFSLLQNLSHRNLAGNDYTDCSFI 134
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: A0A2U1LDT4_ARTAN (Calcium load-activated calcium channel n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LDT4_ARTAN)

HSP 1 Score: 88.2 bits (217), Expect = 5.610e-17
Identity = 51/124 (41.13%), Postives = 79/124 (63.71%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAM 373
            A+ W  +YR+  Y+ LK  I+K +K LE  K ++++     K+ K+++ + R+E  L   T++L      S  VV+LV+  V  ++N  + G VVAKLPFVPF ++Q++SHRGL GDD TDC+M
Sbjct:   30 AISWLLIYRRTSYKSLKTAIDKASKKLETMKTDNMVS----KKNKAKK-IDRVETTLKESTRDLSLFKFKSGTVVALVLFIVFGLMNSLYEGRVVAKLPFVPFKIVQKMSHRGLRGDDYTDCSM 148
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: A0A118JTC9_CYNCS (Calcium load-activated calcium channel n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118JTC9_CYNCS)

HSP 1 Score: 88.2 bits (217), Expect = 5.610e-17
Identity = 48/124 (38.71%), Postives = 74/124 (59.68%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAM 373
            A+ W  +YR+  Y+ LK  I+K +K LE  K +S  +     R+   + + R+E  L   +++L      S  VV+L++ AV   +N  + G  VAKLPF+P  ++Q++SHRGL GDDPTDC+M
Sbjct:   30 AISWLLIYRRTSYKSLKSTIDKASKKLETMKTDSTAL-----RKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALILFAVFGFLNSLYEGKAVAKLPFIPLRIVQKMSHRGLQGDDPTDCSM 148
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: A0A2R6S218_ACTCC (Calcium load-activated calcium channel n=5 Tax=asterids TaxID=71274 RepID=A0A2R6S218_ACTCC)

HSP 1 Score: 88.2 bits (217), Expect = 5.870e-17
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAM 373
            A+ W  +YR   Y+ LK  I+K +K LE  K +S +  N K + K+++ + R+E  L    ++L      S  VV+LV+  V  ++N  F G  VAKLPFVP  ++Q++SHRGL GDDPTDC+M
Sbjct:   31 AISWVLIYRTTSYKSLKSSIDKASKKLETMKTDSSI--NNKPKSKAKK-MDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKAVAKLPFVPVRIVQKMSHRGLQGDDPTDCSM 151
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: W9SNZ3_9ROSA (Calcium load-activated calcium channel n=7 Tax=fabids TaxID=91835 RepID=W9SNZ3_9ROSA)

HSP 1 Score: 87.8 bits (216), Expect = 7.920e-17
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAM 373
            A+ W  +YR   Y+ L+  I+K AK LE  K ES  +  +K + K    + R+E  L   +++L      S  VV+LV+  V  ++N  F G VVAKLPF PF L+ ++SHRGL G+DPTDC+M
Sbjct:   31 AISWLLIYRTNSYKSLRSSIDKAAKKLETMKTESAKIAAKKSKTKK---IDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGNDPTDCSM 151
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: A0A2P5C5L7_TREOI (Calcium load-activated calcium channel n=1 Tax=Trema orientale TaxID=63057 RepID=A0A2P5C5L7_TREOI)

HSP 1 Score: 87.4 bits (215), Expect = 1.120e-16
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAM 373
            A+ W  +YR   Y+ L+  I+K AK LE  K E+      KK +  +  + R+E+ L   +++L      S  VV+LV+  V  ++N  F G VVAKLPF PF L+ ++SHRGL GDDPTDC+M
Sbjct:   31 AISWILIYRTNSYKSLRSSIDKAAKKLENMKTETSAKIAAKKSKTKK--IDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGDDPTDCSM 152
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: A0A6P4BNF6_ARADU (Calcium load-activated calcium channel n=8 Tax=Fabaceae TaxID=3803 RepID=A0A6P4BNF6_ARADU)

HSP 1 Score: 85.5 bits (210), Expect = 5.190e-16
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAM 373
            A+ W  +YR   Y+ L+  I+K +K LE  K ES  ++ +K + K    + R+E  L   +++L      S  VV+LV+  V  ++N  F G VVAKLPF PF L+ ++SHRGL G DPTDC+M
Sbjct:   29 AISWVLIYRTNSYKNLRSSIDKASKKLETMKTESNKINIKKSKTKK---IDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGSDPTDCSM 149
[Close]
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Match: A0A2J6LCA7_LACSA (Calcium load-activated calcium channel n=2 Tax=Asteraceae TaxID=4210 RepID=A0A2J6LCA7_LACSA)

HSP 1 Score: 85.5 bits (210), Expect = 5.550e-16
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 2 
Query:    2 ALGWYTVYRKPGYQRLKRQIEKMAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSKLVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDCAM 373
            A+ W  +YR   Y+ LK  I+K +K LE  K +S +    KK +  +  + R+E  L   +++L      S  VV+LV+  V   +N  F G  VAKLPFVP  ++Q++SHRGL GDDPTDC+M
Sbjct:   29 AISWLLIYRTTSYKSLKSSIDKASKKLETMKTDSTVAAAPKKSKTKK--IDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGFLNNLFEGKAVAKLPFVPARIVQKMSHRGLQGDDPTDCSM 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15106.3029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G127_ECTSI1.280e-3356.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0A0LGX0_CUCSA1.580e-1742.74Calcium load-activated calcium channel n=7 Tax=fab... [more]
A0A7J7JEZ9_BUGNE2.120e-1745.60Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
A0A2U1LDT4_ARTAN5.610e-1741.13Calcium load-activated calcium channel n=1 Tax=Art... [more]
A0A118JTC9_CYNCS5.610e-1738.71Calcium load-activated calcium channel n=1 Tax=Cyn... [more]
A0A2R6S218_ACTCC5.870e-1741.94Calcium load-activated calcium channel n=5 Tax=ast... [more]
W9SNZ3_9ROSA7.920e-1741.94Calcium load-activated calcium channel n=7 Tax=fab... [more]
A0A2P5C5L7_TREOI1.120e-1641.94Calcium load-activated calcium channel n=1 Tax=Tre... [more]
A0A6P4BNF6_ARADU5.190e-1641.13Calcium load-activated calcium channel n=8 Tax=Fab... [more]
A0A2J6LCA7_LACSA5.550e-1641.13Calcium load-activated calcium channel n=2 Tax=Ast... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15106contigH-paniculata_contig15106:3123..5495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue9.9e-19
Seed eggNOG ortholog2880.D7G127
Preferred nameTMCO1
KEGG koko:K21891
KEGG TC1.A.106.1
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006983,GO:0006984,GO:0007154,GO:0007165,GO:0008150,GO:0008324,GO:0009607,GO:0009987,GO:0012505,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0019725,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032469,GO:0033554,GO:0034220,GO:0034976,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071216,GO:0072503,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827
EggNOG free text desc.endoplasmic reticulum calcium ion homeostasis
EggNOG OGsKOG3312@1,KOG3312@2759
Ec32 ortholog descriptionUncharacterised conserved protein UCP023322, transmembrane eukaryotic
Ec32 orthologEc-27_001280.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons3
Model size1108
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15106.3029.1prot_H-paniculata_contig15106.3029.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15106 3190..4832 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.3110821-UTR-H-paniculata_contig15106:3122..31891622929212.3110821-UTR-H-paniculata_contig15106:3122..3189Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15106 3123..3189 +
1691480772.389132-UTR-H-paniculata_contig15106:3122..31891691480772.389132-UTR-H-paniculata_contig15106:3122..3189Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15106 3123..3189 +
1622929212.3791678-UTR-H-paniculata_contig15106:4832..54951622929212.3791678-UTR-H-paniculata_contig15106:4832..5495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15106 4833..5495 +
1691480772.4561477-UTR-H-paniculata_contig15106:4832..54951691480772.4561477-UTR-H-paniculata_contig15106:4832..5495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15106 4833..5495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.3236551-CDS-H-paniculata_contig15106:3189..32021622929212.3236551-CDS-H-paniculata_contig15106:3189..3202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15106 3190..3202 +
1691480772.406147-CDS-H-paniculata_contig15106:3189..32021691480772.406147-CDS-H-paniculata_contig15106:3189..3202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15106 3190..3202 +
1622929212.3398323-CDS-H-paniculata_contig15106:3860..40471622929212.3398323-CDS-H-paniculata_contig15106:3860..4047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15106 3861..4047 +
1691480772.4246836-CDS-H-paniculata_contig15106:3860..40471691480772.4246836-CDS-H-paniculata_contig15106:3860..4047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15106 3861..4047 +
1622929212.3593817-CDS-H-paniculata_contig15106:4654..48321622929212.3593817-CDS-H-paniculata_contig15106:4654..4832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15106 4655..4832 +
1691480772.4369314-CDS-H-paniculata_contig15106:4654..48321691480772.4369314-CDS-H-paniculata_contig15106:4654..4832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15106 4655..4832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15106.3029.1

>prot_H-paniculata_contig15106.3029.1 ID=prot_H-paniculata_contig15106.3029.1|Name=mRNA_H-paniculata_contig15106.3029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MAKDLEKKKAESLLMDNEKKREKSRRDVGRLENDLTSLTKELQTLATPSK
LVVSLVVMAVMFVINRSFTGFVVAKLPFVPFSLIQRLSHRGLAGDDPTDC
AMVRVMELTLVFHDVDISGILEVDT*
back to top

mRNA from alignment at H-paniculata_contig15106:3123..5495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15106.3029.1 ID=mRNA_H-paniculata_contig15106.3029.1|Name=mRNA_H-paniculata_contig15106.3029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2373bp|location=Sequence derived from alignment at H-paniculata_contig15106:3123..5495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTTGGGATGGTACACGGTGTACCGAAAGCCCGGGTATCAGAGGCTCA
AGAGGCAGATCGAGAAAATGGCCAAAGACCGTGAGTCAAGGGAGCAGATC
GGTACCTTGTACATTGCTGATGCAGGCCATATTCCCTGCCTGCGTCACCC
AATGACGTAGGATATTTAGCTATCGCATGTATCTTCGATGGGCAGGATGT
AGATGGTCTACAATGCGCTCGTCATTCAGTTTTAAGGACACACAGTAAGT
TACAGGAATGATGTCAAGCTGAGCATACATTCTCCCTAATCAACACTAGT
ACCTGCACTGTTAGTCCAACGCTAGGAACATTTCGCTTACTTCACCCCCC
GGACGAGTACGAATACTTGGAGTGTTCGCGACAACGAGAATAATTGTTCG
CTTCGGTTTCAGAATGTGCGGGCATACAGAACGAAGTTTTGACTCTTGTA
TATTCCTGTTGCTATTTTTCGGACCAATCGTGGATTGTCCGGGATACATG
GAATATACGCGCTCATGCCGAACCTTGAGGATGTTTTTTTTTCCCGTCGC
AAATATTCCAAGTGTCCGTGTTCGTCCTGGGGGTATGTATTGACTCATTG
CTCGGTCTGTCTGCTCCGAATGGTTTTTTGGAGAATTGGCCACCACGGCA
ATACATGACGTCATCACGTGTTGCGTCACATCGATCGGTCGTCGCGCGGT
TGTGTTTTTTTGTGTTCGTTGTTTCCTTTTTTGTCAAGTGGAGAAGAAGA
AAGCCGAGTCGTTGTTGATGGACAACGAAAAAAAGCGCGAAAAGAGTCGA
CGGGATGTCGGGCGACTGGAGAATGACTTGACATCATTAACGAAGGAGCT
GCAGACCCTTGCCACGCCTTCCAAGCTCGTGGTGTCCTTGGTGGTCATGG
CGGTCATGTTTGTGATCAACCGCAGGCAAGGAAGAGATATATTGCAAAAG
AGAGGGTTATGTATAAAAACCAACCACGAAGCGAGCAGTCGAGAAGTCAT
TGCGTGGGTTTTTTACGTCGCCGCCTTGTAAGGTCTGCACGCCCGAGACG
ATCCTTTTTCATTCTATGGTTTGTTTTTTTCCAATTTACTGTTGCTTCGA
CCAGTCACTCTGGTGGAAGCCAAGATTTTCTCCACAAACCAAAGAACCGA
AACCAAAAGTGTCTCCACGTCAGATGAGGCAAAGTACGTCACCGTTTTCG
ATCATCGTTGGGGCCAGTTTAGGTGGAATCATCTTCTGCTTTAAATCAGC
GGGGAAACCGGTATGGTTATCTGACGGCGCAAGCCGTATAGACCTTTGTT
TCCCCGAACGACGCTTAAAACATGGGCTGTGGTGTATGAAGATCTTCAGT
AGTATTCCGTTCTTTTTTAGTGTGGGGGTAGCCTGCCGCACAGCGTACAT
ACCGAGCACCACCAAGCTTAGGTTGAAAAAAACGTTTCACGACTTACAAT
TGTGTAACCGCACAAGCAGTTATATAATGTTTTTAATGTCGCGCTTATAC
CCCATGGTCGCTTCGCCCTTTTTTGTTTTCAGTTTCACGGGATTTGTTGT
GGCGAAGCTCCCGTTTGTGCCGTTCTCGTTGATTCAGCGACTTAGCCACC
GCGGCCTCGCGGGGGATGACCCAACCGACTGCGCTATGGTGAGGGTGATG
GAGCTTACATTAGTATTTCATGATGTTGATATCAGCGGTATTTTAGAGGT
GGATACTTGAAGTTCCTAAGGCGAACGATGACAAGCGATGCCTACGGCAG
GGTGGCACTCTGCGGAGTTTTGGATGTATACTTGCTAGAACATCGTGAAG
GTTCACGACAACCGCCGCATCGATGTAGATTGTCCACCTGAGATAGATGT
CAACAGAGTGGGCGGGGGAGGGCAGGCCATGGTAAAGTTCGTTCTTTCGA
TTATGTTGCCTACTGGCTCGCGCCGAACGGAATCTCTTGTGCAGACGTGA
TGCTGAAATTTCGAGAGACGATGGTGTCGTCGCCCGGAGGTGCTGCTACT
GACGGCATTCAGGAGGCACGTGCGTGATTTCTTGTTTGATATGAGGGGTG
CCGAAGTCGCCTCACGTGGTCTCAGCGAGGGATATGTCGACGCACAAAAT
ATTGTGCTTCAAGAGTCCAACCTCGGCTTTGAACCTCCCCAAGCGCTGAA
CATGGTTGGCCAACGAATGATGTAGCGACTCGCCAGAAGTCAACGCTAGT
GCTCAGATTTGCATTCAATCTCATCCTCGATTGCTCATGTGATGTACGTT
GTTTGCGTATTTGAGCTGCCCATTTATTTGTGCAGACGAAGGCGCTACTT
TGCGCCCTGCTTGGGCTGTTTTTTTTGTTTTTTTCCTTTTATTGGTGCAA
TTACGCAGCACCAAGCCAAGAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15106:3123..5495+

>mRNA_H-paniculata_contig15106.3029.1 ID=mRNA_H-paniculata_contig15106.3029.1|Name=mRNA_H-paniculata_contig15106.3029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig15106:3123..5495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAAGACCATGGCCAAAGACCTGGAGAAGAAGAAAGCCGAGTCGT
TGTTGATGGACAACGAAAAAAAGCGCGAAAAGAGTCGACGGGATGTCGGG
CGACTGGAGAATGACTTGACATCATTAACGAAGGAGCTGCAGACCCTTGC
CACGCCTTCCAAGCTCGTGGTGTCCTTGGTGGTCATGGCGGTCATGTTTG
TGATCAACCGCAGTGGAGAAGAAGAAAGCCGAGTCGTTGTTGATGGACAA
CGAAAAAAAGCGCGAAAAGAGTCGACGGGATGTCGGGCGACTGGAGAATG
ACTTGACATCATTAACGAAGGAGCTGCAGACCCTTGCCACGCCTTCCAAG
CTCGTGGTGTCCTTGGTGGTCATGGCGGTCATGTTTGTGATCAACCGCAG
TTTCACGGGATTTGTTGTGGCGAAGCTCCCGTTTGTGCCGTTCTCGTTGA
TTCAGCGACTTAGCCACCGCGGCCTCGCGGGGGATGACCCAACCGACTGC
GCTATGGTGAGGGTGATGGAGCTTACATTAGTATTTCATGATGTTGATAT
CAGCGGTATTTTAGAGGTGGATACTTGATTTCACGGGATTTGTTGTGGCG
AAGCTCCCGTTTGTGCCGTTCTCGTTGATTCAGCGACTTAGCCACCGCGG
CCTCGCGGGGGATGACCCAACCGACTGCGCTATGGTGAGGGTGATGGAGC
TTACATTAGTATTTCATGATGTTGATATCAGCGGTATTTTAGAGGTGGAT
ACTTGA
back to top