mRNA_H-paniculata_contig15081.3016.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15081.3016.1
Unique NamemRNA_H-paniculata_contig15081.3016.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15081.3016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15081contigH-paniculata_contig15081:5677..6356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.2080708-CDS-H-paniculata_contig15081:5676..57631622929210.2080708-CDS-H-paniculata_contig15081:5676..5763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15081 5677..5763 -
1691480771.5137486-CDS-H-paniculata_contig15081:5676..57631691480771.5137486-CDS-H-paniculata_contig15081:5676..5763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15081 5677..5763 -
1622929210.2226698-CDS-H-paniculata_contig15081:6272..63561622929210.2226698-CDS-H-paniculata_contig15081:6272..6356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15081 6273..6356 -
1691480771.5241668-CDS-H-paniculata_contig15081:6272..63561691480771.5241668-CDS-H-paniculata_contig15081:6272..6356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15081 6273..6356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15081.3016.1prot_H-paniculata_contig15081.3016.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15081 5677..6356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15081.3016.1

>prot_H-paniculata_contig15081.3016.1 ID=prot_H-paniculata_contig15081.3016.1|Name=mRNA_H-paniculata_contig15081.3016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
GLSQTTHTISTVSASTSSYFRGGTLLYMAPELFPGRERGKEETQAELSDV
FRYAMK*
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mRNA from alignment at H-paniculata_contig15081:5677..6356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15081.3016.1 ID=mRNA_H-paniculata_contig15081.3016.1|Name=mRNA_H-paniculata_contig15081.3016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=680bp|location=Sequence derived from alignment at H-paniculata_contig15081:5677..6356- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTGTCGCAGACTACTCATACTATATCGACGGTCTCTGCCAGCACCTC
TTCCTACTTTCGCGGAGGCACCTTATTGTACATGGTGAGAAAGCTGTGGT
ACGCTGTTGTTGTAGATTGAGTGGTTCGATAGGCACAGTATGGTGGAACT
AGTGTATACATCGTTACTGGAGATTTGGTCGAGATGGACTTCCCACCATA
ATTCAGTACAACGCAGTGCATTTTTGGTAAAAAGTTGTTTGCGCACGTTG
CAGTAGAAGCCCTTTATTTCACGTTGAGAGCGTTGTGCGACAGAACGCCC
CCGCTTTTATTTCACCTGCAGGTCTAGAGAATCCTTGCGCATTAGTATTG
TGTTGATTCATGTCAAGATTATCGTACCGTTTGTGTTTCCTGTATTGCAT
TCACTGCCTATTCGTTGGCTTCTATCCCCCAATGACGTGATACTGCGGCA
ACATCGAAATTGGCGGATGTGCAGAACAAGGTGACAAAAACAGGACTGTT
CGGCAGAGGCTTGTTTTGTTCAATGCTGTACTACCCAATAATATCGAGCA
CCGACGATTTGTTTCTCCGATAACCCTACAACGCGTCGTTTAGGCGCCCG
AATTGTTTCCTGGAAGAGAGCGTGGTAAAGAAGAGACGCAGGCCGAACTC
AGCGATGTATTCAGGTACGCTATGAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15081:5677..6356-

>mRNA_H-paniculata_contig15081.3016.1 ID=mRNA_H-paniculata_contig15081.3016.1|Name=mRNA_H-paniculata_contig15081.3016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig15081:5677..6356- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTGTCGCAGACTACTCATACTATATCGACGGTCTCTGCCAGCACCTC
TTCCTACTTTCGCGGAGGCACCTTATTGTACATGGGGCTGTCGCAGACTA
CTCATACTATATCGACGGTCTCTGCCAGCACCTCTTCCTACTTTCGCGGA
GGCACCTTATTGTACATGGCGCCCGAATTGTTTCCTGGAAGAGAGCGTGG
TAAAGAAGAGACGCAGGCCGAACTCAGCGATGTATTCAGGTACGCTATGA
AATAAGCGCCCGAATTGTTTCCTGGAAGAGAGCGTGGTAAAGAAGAGACG
CAGGCCGAACTCAGCGATGTATTCAGGTACGCTATGAAATAA
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