Homology
BLAST of mRNA_H-paniculata_contig15040.2996.1 vs. uniprot
Match:
D7G1M3_ECTSI (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M3_ECTSI)
HSP 1 Score: 84.3 bits (207), Expect = 1.120e-13
Identity = 63/210 (30.00%), Postives = 85/210 (40.48%), Query Frame = 1
Query: 517 SQARFSVTVPRTRGAQNQTHSITKAVTNGLAPLLSGVNAG--VGLLQVLNTTASLSVAPVSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERPRGNNTDIINSRSRQTTQTTSSAVALELRDGKVIWRAGHELWLAVAGAEDLPSQGYSRDERVNEAARRGGSSSPAEHSSTSTNRPRGCNGDPPNGSARFNAPRGSARYDFVIIW 1140
SQARFSVT+P RG ++ ++TK VTNGL PLL G AG VGLL VLNTTASL+V+ + + + ++ VAL +RD +W G ELW+++A ED G + D+ A PRGSARYDF+++W
Sbjct: 25 SQARFSVTLPPPRGPDDRCRAVTKVVTNGLVPLLEGFTAGEGVGLLHVLNTTASLAVSSIPPPTTTVQEAAGTVGATAV--------------------------------SPAPPATTVALTIRDSSAVWGQGQELWMSLAQEEDTSCGGSADDD------------------------------------ALAKVPRGSARYDFLVLW 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15040.2996.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.12e-13 / Id = 30.00 Sequence D7G1M3_ECTSI
Match Name E-value Identity Description
D7G1M3_ECTSI 1.120e-13 30.00 SpoU_methylase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 85.5 Seed ortholog evalue 7.3e-14 Seed eggNOG ortholog 2880.D7G1M3 Hectar predicted targeting category other localisation EggNOG free text desc. SpoU rRNA Methylase family EggNOG OGs 2S6AC@2759,COG0566@1 COG Functional cat. J Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 2 Model size 1436 Cds size 1434 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15040.2996.1
>prot_H-paniculata_contig15040.2996.1 ID=prot_H-paniculata_contig15040.2996.1|Name=mRNA_H-paniculata_contig15040.2996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=478bp
LFLWWDSLQAGKGGNRMKGTKGGGLIMGEMVAGLMLAAVMLLIPQTIAWR back to top mRNA from alignment at H-paniculata_contig15040:3083..5258-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15040.2996.1 ID=mRNA_H-paniculata_contig15040.2996.1|Name=mRNA_H-paniculata_contig15040.2996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2176bp|location=Sequence derived from alignment at H-paniculata_contig15040:3083..5258- (Halopteris paniculata Hal_grac_a_UBK monoicous)CTGTTTTTATGGTGGGATAGTTTACAGGCAGGGAAGGGTGGAAATAGGAT
GAAAGGAACCAAGGGGGGTGGCCTGATAATGGGCGAAATGGTAGCTGGCC
TCATGTTAGCGGCTGTGATGCTCTTGATACCGCAG GTACGCTTGCGTCCA
GACACGACAAAGTTGTTCATCAAGTGTGAATTTTGAAATGTCAAACGATC
GACATATGGGAAACGCGTACGTTGTCATGTATCCCTCTGCTGGTCGGTCA
TCTCTGGCGATACTCACTCCTCTGTGGCGCAGTCGTTTTATCTTCAAGAT
GCAGCGACTTGTGCTTCTCCATAGGCTAACATCGATACCTTAGCTCTACA
TACGGATATCTTTTCTTATTAGCCTACAGCACCAGTACCGACAGTACAGT
GTCCGACCTACCACACTGGAGCGTTACGTCGGAGCTGTCAAATTCAACAG
CAGGTCGTTAGGGAAGATGCGGTGAGTACTTGCCACGCAGATACAGGTAT
ACATGCAGGGTTCAATCAGTCCCAGCTGCCCACGTCTCTTCGCTGTAGAC
TGTCTGTAATCTATTGGACTACGTTGGCGAACTATCCTGTTCGCGCGGTG
CTGCACTCTTTGTACTGTATTGCTGCTGCCCTATTGATGCTGTGTGAAAC
CATTACCTACTCTACACACCACTCCTTTCAGTTTGTGGGCGACACAGGCA
GGTACACAACCCTGACTCTTTCTCTTCGGTCTGTGTCCAGAGGCTTGTTC
GTGTGGCAAACCATACACACCATACCAATCACGTTGAAAGTCACAGACAC
TAACATTTTACCTGTACGATGACTCTCTACACCTAAAACTGTCCTGTGGC
GTGTGCGCTCTGTCTCTCCAAACAGACCATAGCGTGGCGAAAGAACCCGC
CCGACATTCTCCGATCGCAGCGGACAAACCACGAGCGACAACGAAAGTAC
TACTGTACCCTCCAACGCCAACAACAGCAAAGACATCAACGCTCAGCGAT
GATGGCAACAATTGATACTAGCAGTAGCAGCTCATCCCCCGCCAACCTTC
CTCCCAACACCTTCCCTCCAACAACCGCAGCAACAATCACGGCGACGTCG
ATGGTCACGTTGACTGAGTCTCGAGTGGAAACTAGAAGCATTGACACCGC
CAGAAGAACAGCGGCGACCCCTCGCGTCAGCAGCAACATCACCACCACCT
CTACCATCGCCACCACCAGAAAAACGGCAACACTGGCATCTTTATCCTCG
GCTTGGTCGCAGGCACGTTTCTCAGTCACCGTTCCTCGGACGCGAGGTGC
ACAAAACCAAACCCATTCCATCACAAAGGCCGTCACCAACGGACTAGCCC
CATTGCTCTCTGGCGTCAACGCGGGCGTTGGTCTCCTGCAAGTGCTGAAC
ACGACGGCGTCCCTCTCCGTGGCGCCTGTCAGCTCTGCTAGCACTACTCT
GCTGGCGGCAGCGGCAGCTACGGCGGGGGAGAACTCTCTGCCCCACGACG
ACAATAATAGCGGAAACCGTAACGACAGCAGCGAGCGACCACGCGGGAAC
AACACCGATATTATTAATAGCAGGAGCAGACAAACAACACAAACAACGTC
CTCTGCGGTAGCCCTGGAGCTTCGCGACGGGAAAGTAATCTGGCGCGCGG
GGCACGAGCTGTGGTTAGCCGTGGCAGGAGCCGAAGACCTCCCCTCACAA
GGATATTCAAGGGATGAGAGAGTAAATGAAGCAGCAAGGAGAGGAGGATC
GAGTTCCCCCGCCGAGCATAGCAGTACCTCTACGAACAGACCCCGAGGTT
GCAACGGTGATCCGCCAAATGGGTCCGCACGGTTCAATGCGCCGAGAGGG
TCCGCGCGGTATGACTTCGTTATCATTTGGCCGACCGCGACCACCGCCGC
CGCCGCCACCGCCAACGTTAGCGGACAGGAAAACTTGGACGCAACTGCAC
TTGTTGCAACGACTCCCAGCGGCAACAAGTACGGCAATGGCATCCAGAAT
GAGGAAAGTAGCGGTACTGGTGAGGGTGACGCCAGACGTTATAGCGATAA
CGGCAGTCACAGCATTAGTAGTACTCATGACACGGACGAAGCGGCAGAGG
TAGGCTCGGCGGCGACGGCGGCGGGCGAGGGTGATACAGGACCGGACCTG
GGGCTAGTAGAGGGCAACTCACGA back to top Coding sequence (CDS) from alignment at H-paniculata_contig15040:3083..5258-
>mRNA_H-paniculata_contig15040.2996.1 ID=mRNA_H-paniculata_contig15040.2996.1|Name=mRNA_H-paniculata_contig15040.2996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2868bp|location=Sequence derived from alignment at H-paniculata_contig15040:3083..5258- (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top