mRNA_H-paniculata_contig1501.2984.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1501.2984.1
Unique NamemRNA_H-paniculata_contig1501.2984.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1501.2984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1501contigH-paniculata_contig1501:24736..25245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size489
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.8951254-UTR-H-paniculata_contig1501:24735..247561622929203.8951254-UTR-H-paniculata_contig1501:24735..24756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1501 24736..24756 +
1691480768.8478234-UTR-H-paniculata_contig1501:24735..247561691480768.8478234-UTR-H-paniculata_contig1501:24735..24756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1501 24736..24756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.9175282-CDS-H-paniculata_contig1501:24756..252451622929203.9175282-CDS-H-paniculata_contig1501:24756..25245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1501 24757..25245 +
1691480768.857944-CDS-H-paniculata_contig1501:24756..252451691480768.857944-CDS-H-paniculata_contig1501:24756..25245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1501 24757..25245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1501.2984.1prot_H-paniculata_contig1501.2984.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1501 24757..25245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1501.2984.1

>prot_H-paniculata_contig1501.2984.1 ID=prot_H-paniculata_contig1501.2984.1|Name=mRNA_H-paniculata_contig1501.2984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MGLHTDLANMTVETSDQDPEEFILAVEKAVDNLAMLNEPVTDSRKHSIIL
AGLTDDYAMVRTVIRSRGLAPYETFRQLIRGHWRREIALHMGNAPDRVLA
TTTGKPRKPPSDGNINRDGERKLGEDQKVEEGVTRPREPTRGGRRRRPVC
AICGVCGHTLFEC
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mRNA from alignment at H-paniculata_contig1501:24736..25245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1501.2984.1 ID=mRNA_H-paniculata_contig1501.2984.1|Name=mRNA_H-paniculata_contig1501.2984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=510bp|location=Sequence derived from alignment at H-paniculata_contig1501:24736..25245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGAACACGGGCACGGGCAATGGGTCTACACACCGACCTCGCCAACAT
GACCGTCGAGACGTCAGACCAAGACCCGGAAGAGTTCATTCTTGCCGTCG
AAAAAGCGGTTGACAATCTGGCGATGCTTAATGAGCCGGTGACCGACTCC
CGGAAACACAGCATCATTCTCGCCGGACTGACCGACGATTACGCGATGGT
ACGAACCGTCATTAGATCGCGCGGGCTAGCTCCATATGAAACGTTCCGAC
AACTGATTCGAGGTCACTGGCGCCGTGAAATTGCGCTGCATATGGGCAAC
GCGCCCGACCGAGTATTGGCCACGACAACCGGAAAACCGAGAAAACCCCC
GTCCGACGGGAACATAAATCGTGACGGCGAACGAAAGCTTGGTGAGGACC
AAAAGGTGGAAGAAGGCGTTACGCGGCCGAGAGAGCCAACAAGAGGAGGA
CGGCGACGAAGACCGGTTTGCGCCATTTGCGGCGTGTGCGGTCATACCCT
TTTCGAGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1501:24736..25245+

>mRNA_H-paniculata_contig1501.2984.1 ID=mRNA_H-paniculata_contig1501.2984.1|Name=mRNA_H-paniculata_contig1501.2984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig1501:24736..25245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCTACACACCGACCTCGCCAACATGACCGTCGAGACGTCAGACCA
AGACCCGGAAGAGTTCATTCTTGCCGTCGAAAAAGCGGTTGACAATCTGG
CGATGCTTAATGAGCCGGTGACCGACTCCCGGAAACACAGCATCATTCTC
GCCGGACTGACCGACGATTACGCGATGGTACGAACCGTCATTAGATCGCG
CGGGCTAGCTCCATATGAAACGTTCCGACAACTGATTCGAGGTCACTGGC
GCCGTGAAATTGCGCTGCATATGGGCAACGCGCCCGACCGAGTATTGGCC
ACGACAACCGGAAAACCGAGAAAACCCCCGTCCGACGGGAACATAAATCG
TGACGGCGAACGAAAGCTTGGTGAGGACCAAAAGGTGGAAGAAGGCGTTA
CGCGGCCGAGAGAGCCAACAAGAGGAGGACGGCGACGAAGACCGGTTTGC
GCCATTTGCGGCGTGTGCGGTCATACCCTTTTCGAGTGTATGGGTCTACA
CACCGACCTCGCCAACATGACCGTCGAGACGTCAGACCAAGACCCGGAAG
AGTTCATTCTTGCCGTCGAAAAAGCGGTTGACAATCTGGCGATGCTTAAT
GAGCCGGTGACCGACTCCCGGAAACACAGCATCATTCTCGCCGGACTGAC
CGACGATTACGCGATGGTACGAACCGTCATTAGATCGCGCGGGCTAGCTC
CATATGAAACGTTCCGACAACTGATTCGAGGTCACTGGCGCCGTGAAATT
GCGCTGCATATGGGCAACGCGCCCGACCGAGTATTGGCCACGACAACCGG
AAAACCGAGAAAACCCCCGTCCGACGGGAACATAAATCGTGACGGCGAAC
GAAAGCTTGGTGAGGACCAAAAGGTGGAAGAAGGCGTTACGCGGCCGAGA
GAGCCAACAAGAGGAGGACGGCGACGAAGACCGGTTTGCGCCATTTGCGG
CGTGTGCGGTCATACCCTTTTCGAGTGT
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