mRNA_H-paniculata_contig1497.2952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1497.2952.1 vs. uniprot
Match: A0A6H5KLN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN8_9PHAE) HSP 1 Score: 593 bits (1528), Expect = 3.200e-198 Identity = 327/562 (58.19%), Postives = 395/562 (70.28%), Query Frame = 3
Query: 405 RSKSNAVGLFRSAGGRIRFGSGT-EGPTRQASMPSTRYARG--HGWKANDSSHNNVEGQDDRPKLVSLSDLIRKEDKVPATL-YEHEGDMDVLIDGRGDAAGGGIPQEALNGETVGIQHALQAAEHGNSIRLAKFLQDGGDVNTVSWLHHMRWSLLHLAAGSAMMGGRLTYANYRKRAEPDCKDGYANCVSELLAAGADPNAVSKHGGYTPLMCAAFTGSKECCWLLLLAGAQVDRKADDGRTAFKFAEKANKHVGGGGNVDGGPAKSVMAVLRDPPKKVPRSPTWVRATIVERSCLEKEDDVPSVQVRWRVPSQASLYPVICGDVHRYYVKVWCRGKGREVIPTKTSTVDTPRRDFCRNQTIDRGIALRKNLALPQSQTASTIVHGLQAGEWYSFTVSCTAEVEGALRQSAPSCKSKPLFIPETKEDHQWHLGGMLSMVTGNNVPSPGGVTAEVNSGQTQAQQAQQARRGQEQSPSDVESRHGHMNHRNVSWAKRDDELGASGGTRQAEGSRDGD---TPPRVSFSRTMPAGLTREWDPRDDINSLPARSQSMPFVGAPSR 2069
RS+S A G F GG F S + + P + + + G +GW+AND +N D+ P+LVSL+DLIRKEDKVPATL YEH GD D +D R D GG+ +A+NG VG+Q ALQAAEHGNS+RL+KFLQDGG+ +T+S LHH+RWSLLHLAAG + MGGRL +A++R+R EPDC DGY CVSELLAAGADPN S GYTPLM AA TGSKECCWLLL AGA++D +ADDGRTAF FA+KA +H+GGG + GG SV+ VLR+PPKK+PRSPT V AT+ ERS LE E++VP V+VRWRVPSQASL P +CGDV R+Y+K WCRGKG+EVI TKTST D PRRDFCRNQ IDRGIALRKNL LPQSQT S IVHGL+AG YSFTVSC AEVEGALR S PSC SKPL IPE+KEDHQW LGGML MVTG + PS G T E + A Q RR QSP+ ++ R G +VSWAK D++ + RQ R D P F R++ + + EW+P+ +P R +S + + +R
Sbjct: 23 RSESEASGAF--GGGPRPFSSTSYDSPRWRGGGANKQRGSGGRYGWRAND-GNNASPADDENPRLVSLADLIRKEDKVPATLLYEHPGDTDAPMDAR-DIEAGGLTHQAMNGGAVGMQEALQAAEHGNSVRLSKFLQDGGNPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYVTCVSELLAAGADPNITSSSLGYTPLMSAALTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKA-RHLGGGSS--GGIHDSVLDVLREPPKKIPRSPTMVIATLAERSSLEPEEEVPPVEVRWRVPSQASLAPTLCGDVERFYLKTWCRGKGKEVIRTKTSTADVPRRDFCRNQIIDRGIALRKNLCLPQSQTTSAIVHGLRAGGVYSFTVSCVAEVEGALRHSPPSCMSKPLLIPESKEDHQWRLGGMLQMVTGKDTPSSG-TTGEGGA-------APQVRRVTNQSPTSIDQRRGPAKSFSVSWAK--DDIAPTIDQRQPASYRVSDDVIVSPSGDFGRSLTSNAS-EWEPKHASPVVPLRRRSQSYASSATR 566
BLAST of mRNA_H-paniculata_contig1497.2952.1 vs. uniprot
Match: D7FV58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV58_ECTSI) HSP 1 Score: 434 bits (1116), Expect = 1.070e-140 Identity = 230/362 (63.54%), Postives = 274/362 (75.69%), Query Frame = 3
Query: 405 RSKSNAVGLFRSAGGRIRFGSGT-EGPTRQASMPSTRYARG--HGWKANDSSHNNVEGQDDR-PKLVSLSDLIRKEDKVPATL-YEHEGDMDVLIDGRGDAAGGGIPQEALNGETVGIQHALQAAEHGNSIRLAKFLQDGGDVNTVSWLHHMRWSLLHLAAGSAMMGGRLTYANYRKRAEPDCKDGYANCVSELLAAGADPNAVSKHGGYTPLMCAAFTGSKECCWLLLLAGAQVDRKADDGRTAFKFAEKANKHVGGGGNVDGGPAKSVMAVLRDPPKKVPRSPTWVRATIVERSCLEKEDDVPSVQVRWRVPSQASLYPVICGDVHRYYVKVWCRGKGREVIPTKTSTVDTPRRDFCRNQ 1475
RS+S A G F GG F S + + P + + + G +GW+AND NNV DD P+LVSL+DLIRKEDKVPATL YEH GD D +D R D GG+ +A+NG VG+Q ALQAAEHGNS+RL+KFLQDGG+ +T+S LHH+RWSLLHLAAG + MGGRL +A++R+R EPDC DGY CVSELLAAGADPN S GYTPLM AA TGSKECCWLLL AGA++D +ADDGRTAF FA+KA +H+GGG + GG SV+ VLR+PPKK+PRSPT V A + ERS LE E++VP V+VRWRVPSQASL P +CGDV R+Y+K WCRGKG+EVI TKTSTVD PRRDFCRNQ
Sbjct: 23 RSESEASGAF--GGGPRPFTSTSYDSPRWRGGGANKQRGSGGRYGWRANDG--NNVSPADDENPRLVSLADLIRKEDKVPATLLYEHPGDTDAPMDAR-DIEAGGLTHQAMNGGAVGMQEALQAAEHGNSVRLSKFLQDGGNPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYVTCVSELLAAGADPNITSSSLGYTPLMSAALTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKA-RHLGGGSS--GGTHDSVLDVLREPPKKIPRSPTLVIAALAERSSLEPEEEVPPVEVRWRVPSQASLAPTLCGDVERFYLKTWCRGKGKEVIRTKTSTVDVPRRDFCRNQ 376
BLAST of mRNA_H-paniculata_contig1497.2952.1 vs. uniprot
Match: A0A835YST7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST7_9STRA) HSP 1 Score: 317 bits (812), Expect = 1.130e-90 Identity = 207/506 (40.91%), Postives = 254/506 (50.20%), Query Frame = 3
Query: 585 KLVSLSDLIRKEDKV------PATL-YEHEGDMDVLIDGRGDAAGGGIPQEALNGETVGIQHALQAAEHGNSIRLAKFLQDGGDVNTVSWLHHMRWSLLHLAAG------------------------SAMMGGRLTYAN--YRKRAEPDCKDGYANCVSELLAAGADPNAVSKHGGYTPLMCAAFTGSKECCWLLLLAGAQVDRKADDGRTAFKFAEKANKHVGGGGN--------------------------------------------------------VDGGPAKSVMAVLRDPPKKVPRSPTWVRATIVERSCLEKE------------------------------------DDVPSVQ-------VRWRVPSQASLYPVICGDVHRYYVKVWCRGKGREVIPTKTSTVDTPRRDFCRNQTIDRGIALRKNLALPQSQTASTIVHGLQAGEWYSFTVSCTAEVEGALRQSAPSCKSKPLFIPETKEDHQWHLGGMLS 1706
KL+SLSDLIR+E+ PA L Y +EG+ L+DG G GGG ++A+N VG Q ALQAAEHGNS LA+FLQD GD T S LHHMRWSLLHLAAG A MG L+ A +R R EPDC DGYA C++ LLAAGADPNA S GGYTPLM AA TGS E CWLLL AGA + G+TA FA+ G + VL++PP+ VPRSP V A + +RS +++E DD V+ VRW +PSQASL P CG RY VK W +G+ +V+ T T PRRDFC++ +DRGIALR NL+L +TASTI+H L+ G YSFTVS AEV+GAL+QS PS SK ++IP+TK+D QW +GG+LS
Sbjct: 184 KLMSLSDLIRREEGGRTRGGGPAPLLYSNEGEAGELLDGDGFDKGGG--RKAVNNGAVGTQEALQAAEHGNSALLARFLQDNGDPRTTSRLHHMRWSLLHLAAGFNXXXXXXXXXXXXXXXXXXXXXGCAGMGSALSLAGAAHRSRPEPDCNDGYAACIALLLAAGADPNATSIQGGYTPLMGAAVTGSAESCWLLLRAGANPLARTAAGQTALDFAQTPRAGAPAGAHQAALKXXXXXXXXXXXXXXXXTALDFAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLQNPPRLVPRSPLQVVARLADRSLVDEEPCRRCLXXXXXXXXXXXXXXXXEASHGFRLVTRSQEDDSQCVEXXXXXXEVRWLIPSQASLLPAHCGAAERYLVKCWSQGQASDVVRTNTGNSLKPRRDFCKHGAMDRGIALRNNLSLQAPRTASTIIHNLRPGREYSFTVSLLAEVDGALQQSPPSAVSKTIYIPKTKDDAQWSVGGVLS 687
BLAST of mRNA_H-paniculata_contig1497.2952.1 vs. uniprot
Match: A0A7S2CTM4_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTM4_9STRA) HSP 1 Score: 300 bits (768), Expect = 3.880e-88 Identity = 167/340 (49.12%), Postives = 218/340 (64.12%), Query Frame = 3
Query: 717 ALNGETVGIQHALQAAEHGNSIRLAKFLQDGGDVNTVSWLHHMRWSLLHLAAGSAMMGGRLTYANYRKRAEPDCKDGYANCVSELLAAGADPNAVSKHGGYTPLMCAAFTGSKECCWLLLLAGAQVDRKADDGRTAFKFAEK---ANKHVGGGGNVDGGPAKSVMAVLRDPPKKVPRSPTWVRATIVERSCLEKEDDVPSVQVRWRVPSQASLYPVICGDVHRYYVKVWCRGKGREVIPTKTSTVDTPRRDFCRNQTIDRGIALRKNLALPQSQTASTIVHGLQAGEWYSFTVSCTAEVEGALRQSAPSCKSKPLFIPETKEDHQWHLGGMLSMVTGNNV 1727
AL+G V Q AL+AAEHGNS LA +L GGD VS LHHM WSLLHLA G A+MGG YR R EPDC +G+A CVS L+AAGADPN SK G YTPLM A+ +G +CC LLL AGA V A DG+TA A + A+ H+ V+ VL +PP+ +PRSP V A +++ E ED V+VRW++P+ S+ V CG++ RY V+ + +G+ EV+ + RRDFC+NQ +DRGIALR+NLALPQ +TAST++HGL G Y FTVSC AE++G++R S PS SKPL IP +E+ +W++G +L V N+
Sbjct: 13 ALDG-AVSTQDALKAAEHGNSDVLAAYLHAGGDPMAVSRLHHMGWSLLHLATGCALMGGISN--TYRTRPEPDCPNGFATCVSLLMAAGADPNVASKQGHYTPLMGASLSGDADCCRLLLQAGAIVKHMALDGQTALDAANRSRFADGHM------------RVLQVLGNPPRLLPRSPLEVTARLLDY--YEGEDRERDVEVRWKIPTTTSMALVKCGEIQRYVVRTYVKGQELEVMHSAVGPGRRQRRDFCQNQVVDRGIALRQNLALPQPRTASTLIHGLIPGVTYHFTVSCIAEIDGSIRDSPPSLMSKPLDIPSYEEE-EWNIGEILDKVFAYNI 334
BLAST of mRNA_H-paniculata_contig1497.2952.1 vs. uniprot
Match: A0A8J2SBP4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBP4_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.860e-26 Identity = 85/215 (39.53%), Postives = 110/215 (51.16%), Query Frame = 3
Query: 744 QHALQAAEHGNSIRLAKFLQDGGDVNTVSWLHHMRWSLLHLAAGSAMMGGRLTYANYRKRAEPDCKDGYANCVSELLAAGADPNAVSKHGGYTPLMCAAFTGSKECCWLLLLAGAQVDRKADDGRTAFKFAEKANKHVGGGGNVDGGPAKSVMAVLRDPPKKVPRSPTWVRATIVERSCLEKEDDVPSVQVRWRVPSQASLYPVICGDVHRYYVK 1388
Q AL+AAEHG++ LA +L++GGD S LHHM WSLLHLAAG A+ GG YR+R EPD G+A CV LLAAGA+P + PL A G LLL AGA + + AE+ +++ +L PPK +PRSP V A + E +E + V+VRWR P A P + G V RY V+
Sbjct: 50 QDALEAAEHGDARALAAYLENGGDPAATSRLHHMGWSLLHLAAGCALAGGPGAAQAYRRRPEPDAPGGFARCVELLLAAGAEPATGDERPA--PLAGAVLCGDAASARLLLRAGAAAPTEVEAPPGRHTAAER----------------EAMRELLAAPPKLLPRSPLRVEAKLSEY--VEGDARERVVEVRWRPPPPA---PGV-GPVERYVVR 240
BLAST of mRNA_H-paniculata_contig1497.2952.1 vs. uniprot
Match: A0A7S4A0J5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0J5_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 6.270e-13 Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 3
Query: 1479 IDRGIALRKNLALPQSQTASTIVHGLQAGEWYSFTVSCTAEVEGALRQSAPSCKSKPLFIPETKEDHQWHLGGMLSMV 1712
+DRG+ALR++L LP ST+VHGL Y F VSC V+G LR+S PS +S+PL +P E++ W G +L V
Sbjct: 1 VDRGVALRRHLNLPPPPRPSTLVHGLAPATTYRFAVSCVCAVDGELRESPPSLRSRPLEVPAVDEEN-WQTGELLEKV 77
BLAST of mRNA_H-paniculata_contig1497.2952.1 vs. uniprot
Match: A0A8J2WDY4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WDY4_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.030e-6 Identity = 39/89 (43.82%), Postives = 48/89 (53.93%), Query Frame = 3
Query: 930 PDCKDGY------------ANCVSELLAAGADPNAVSKHGGYTPLMCAAFTGSKECCWLLLLAGAQVDRKADDGRTAFKFAEKANK-HV 1157
PD +D Y A+CVS LL AGADPNAV+ H G+T L AA+ GS+ +LL AGA VD K + TA + K HV
Sbjct: 326 PDMRDEYGSTPLFIAANEDADCVSMLLRAGADPNAVTDHMGFTALHSAAYNGSENIIRMLLEAGAAVDVKTNTNWTAIDYIYSTRKAHV 414 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1497.2952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1497.2952.1 >prot_H-paniculata_contig1497.2952.1 ID=prot_H-paniculata_contig1497.2952.1|Name=mRNA_H-paniculata_contig1497.2952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=757bp MSGASEARDDLAMMPSSAPPQPLSQSRNSRRSSESEVEVGDMDERALLGLback to top mRNA from alignment at H-paniculata_contig1497:7056..18739+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1497.2952.1 ID=mRNA_H-paniculata_contig1497.2952.1|Name=mRNA_H-paniculata_contig1497.2952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11684bp|location=Sequence derived from alignment at H-paniculata_contig1497:7056..18739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1497:7056..18739+ >mRNA_H-paniculata_contig1497.2952.1 ID=mRNA_H-paniculata_contig1497.2952.1|Name=mRNA_H-paniculata_contig1497.2952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4542bp|location=Sequence derived from alignment at H-paniculata_contig1497:7056..18739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |