mRNA_H-paniculata_contig14936.2938.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14936.2938.1
Unique NamemRNA_H-paniculata_contig14936.2938.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14936.2938.1 vs. uniprot
Match: A0A7S4DJB2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJB2_HETAK)

HSP 1 Score: 48.5 bits (114), Expect = 6.500e-5
Identity = 27/88 (30.68%), Postives = 42/88 (47.73%), Query Frame = 1 
Query:    1 GDVIGEDCVLGFETRQYQVVALTPRVQVCVVSRENALLYLTSGELDQLHDQTSDLYRYAGGSSKSYFKAVKGWQDATKLKLEAIGPSY 264
            GD  GEDCVLG+  R YQVVAL        ++R +    L+  +++Q+  +T  LY       + Y +     +    L+   +GP Y
Sbjct:   25 GDHFGEDCVLGYNFRCYQVVALEDETVCLAINRGDIERNLSKTDIEQIRQETRALYVPDEELYRKYRQITDSQKIIAHLRNRELGPGY 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14936.2938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DJB2_HETAK6.500e-530.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14936contigH-paniculata_contig14936:304..2358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size274
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14936.2938.1prot_H-paniculata_contig14936.2938.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14936 304..2358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.9722826-CDS-H-paniculata_contig14936:303..3301622929194.9722826-CDS-H-paniculata_contig14936:303..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14936 304..330 -
1691480765.6121593-CDS-H-paniculata_contig14936:303..3301691480765.6121593-CDS-H-paniculata_contig14936:303..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14936 304..330 -
1622929194.982395-CDS-H-paniculata_contig14936:1313..14001622929194.982395-CDS-H-paniculata_contig14936:1313..1400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14936 1314..1400 -
1691480765.626171-CDS-H-paniculata_contig14936:1313..14001691480765.626171-CDS-H-paniculata_contig14936:1313..1400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14936 1314..1400 -
1622929194.9951417-CDS-H-paniculata_contig14936:1816..19211622929194.9951417-CDS-H-paniculata_contig14936:1816..1921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14936 1817..1921 -
1691480765.6378968-CDS-H-paniculata_contig14936:1816..19211691480765.6378968-CDS-H-paniculata_contig14936:1816..1921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14936 1817..1921 -
1622929195.0071225-CDS-H-paniculata_contig14936:2304..23581622929195.0071225-CDS-H-paniculata_contig14936:2304..2358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14936 2305..2358 -
1691480765.648214-CDS-H-paniculata_contig14936:2304..23581691480765.648214-CDS-H-paniculata_contig14936:2304..2358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14936 2305..2358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14936.2938.1

>prot_H-paniculata_contig14936.2938.1 ID=prot_H-paniculata_contig14936.2938.1|Name=mRNA_H-paniculata_contig14936.2938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
GDVIGEDCVLGFETRQYQVVALTPRVQVCVVSRENALLYLTSGELDQLHD
QTSDLYRYAGGSSKSYFKAVKGWQDATKLKLEAIGPSYRRR
back to top

mRNA from alignment at H-paniculata_contig14936:304..2358-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14936.2938.1 ID=mRNA_H-paniculata_contig14936.2938.1|Name=mRNA_H-paniculata_contig14936.2938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2055bp|location=Sequence derived from alignment at H-paniculata_contig14936:304..2358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGATGTGATAGGAGAGGATTGCGTCCTGGGATTTGAAACGAGGCAGTA
CCAGGTAAAACAACTCTCTTGAAGCTTGGAGCTTGCAAGCGTGTTCCCGA
GAAAAACAGTTTGTTGGGTTCTCGTGCCCCCTGTCTTGAACGCTTGGGGG
CAGGCAGTGGCGGCATCAAATGGCGTCGGTTGGTGTGTCCGTTTTGTTAT
GTCAACATGTTACGAAATTGGATCAGAGCCGTTCGTCAACTCTAATCTCT
GGAGTGATCTGTCCACGAGCAAGATTTTTTTGCTGCCGGAACACCACGTC
GTAATGACGCAACGAGACACATCACCGGATGGTTGATCTCAATCAGCTTG
GCACCACGCGTGTTCAGTAGTAGCCTACTGGTACTGACTGATCTGGTGTT
GACTGGTGTTGTGCATTTGGTATGTTTTTTGCAACAGGTGGTGGCTTTGA
CACCACGTGTGCAAGTGTGCGTCGTATCGAGGGAAAACGCGCTTTTGTAT
CTGACATCGGGTGAGCTGGACCAGTTACACGATCAAACATCGGTGAGTGA
GAAATACAAAGTCTGATTCAGCCTGAATTTCTTGGTCGTCCACGAGTGCG
TCAGGAAGCACACCCGTGTCCACACAAGACCGACCCCGGAAAATCAATCA
ACCCGCTTTGGTCGAATATCAAATGGGCTTCAACAATTAATTATGCGTCC
GTAGTACACTCACAGCTATGTACATTCATGTTCATCAGCCGAGCCACCTT
TGAAACAATTGAAAGGGTCCTGTGCTAGGCTTCGCTTCCGCGACGAGAAG
GCATACTGGTAGTTGAAATGAAGCTTCCTTGAGCGGCATCGTTCTTCTCT
AGAGGAAGAATTATTCATCTACATAAACATGTCCATGCTATATTTTGTGA
TCTGGTGATGCGCTTGCACACAATAACGCGTTTTCGCCGGCGTGGTAAAT
TGGAATAGGACCTATATCGGTATGCGGGAGGCTCTAGCAAATCGTACTTC
AAGGCTGTTAAGGGGTGGCAGGACGCTACGAAACTGAAGCTGGAGGTGAC
CACTCATTTGGGTAGAGAGGCATGGACGGGCTTGCGTTCGGACCCTTGAC
CTTAAATATATATTTTTGCCTCCGTTCTAACTCTGCGTTTATGTCAAGGA
TGGCATGTAGTGGTTTACTTGGTGTTCAACGTTCTGATGCCTGCTTAGCC
CTGGGGGATATGCTCACGTTGGAGTAGTTAATCTTAATCTGTGGCTGGCT
GGGTATAGTTTGATGTCCTTCCAGGAGATTATGACGTAGAAACTTGAATC
AGTGGGGGCGTACTGTAGCATATCGAAAAGGAGTTGGGGGCGTTTCTTTT
GTCATGAACGTTTTTGTTAGGGAGGGATGAAAAATCACTAAGAGAGGTAA
TCTGATATAACTTGGGTGCAGAATATCCGAGAAACGCGCCTTGGAATTCA
GATCCCAAGCCCGGGGTGCACGTATCATACGTTGTTGATGCGTTAGTTAT
TGTGTTGACCCATGTAGAGGGTATCACACGTCGATATTTATTTTTCCTCT
GGCGATCTGCTTTTGGACCATTTTCCCGCGATGCACTTGGGCCTTTATTA
TACATGGGAAATCAGCAAAACTAGAGAGGAATATGCAGGAGAGGAAGTGA
TCTCTTGCTCTGTCTGAGGAGAAAATTGGTTGATTCGGCGTATTTTGCCC
CTTAGAGGTCATTATCTAATTTTGCTGATAAGTGTAAACAACCGAACTTT
GAAGTTAGCTGCAAAGAGTCAATATTGTACCCCCTCCCCCCGTGAAAGAG
CAAAAATAGTTGGTTCACCTTTATCTTGCGTCCCAAAGGGGTTAAATTCA
AGTTTTTGTCGGTATGGTAGCATCGGATAGAGGTTTTTTTTTGCCTTAGC
ATTCCGGGGGTTCGAAAAAAATAAATATATTAAGTTTCGTCTGCCCAAAA
ATATTTTGCTTTCGCGGCGGGTGGAGTGATGGTCAGTACGATAAGTTTAT
CTGTTCGCTTTGATTCGCTGCCGCTCAGGCGATTGGGCCTTCTTACAGAA
GACGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14936:304..2358-

>mRNA_H-paniculata_contig14936.2938.1 ID=mRNA_H-paniculata_contig14936.2938.1|Name=mRNA_H-paniculata_contig14936.2938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig14936:304..2358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGATGTGATAGGAGAGGATTGCGTCCTGGGATTTGAAACGAGGCAGTA
CCAGGGCGATGTGATAGGAGAGGATTGCGTCCTGGGATTTGAAACGAGGC
AGTACCAGGTGGTGGCTTTGACACCACGTGTGCAAGTGTGCGTCGTATCG
AGGGAAAACGCGCTTTTGTATCTGACATCGGGTGAGCTGGACCAGTTACA
CGATCAAACATCGGTGGTGGCTTTGACACCACGTGTGCAAGTGTGCGTCG
TATCGAGGGAAAACGCGCTTTTGTATCTGACATCGGGTGAGCTGGACCAG
TTACACGATCAAACATCGGACCTATATCGGTATGCGGGAGGCTCTAGCAA
ATCGTACTTCAAGGCTGTTAAGGGGTGGCAGGACGCTACGAAACTGAAGC
TGGAGGACCTATATCGGTATGCGGGAGGCTCTAGCAAATCGTACTTCAAG
GCTGTTAAGGGGTGGCAGGACGCTACGAAACTGAAGCTGGAGGCGATTGG
GCCTTCTTACAGAAGACGGGCGATTGGGCCTTCTTACAGAAGACGG
back to top