mRNA_H-paniculata_contig14934.2937.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14934.2937.1
Unique NamemRNA_H-paniculata_contig14934.2937.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14934.2937.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 1.110e-73
Identity = 132/266 (49.62%), Postives = 170/266 (63.91%), Query Frame = 2 
Query:    2 VPTMTRLGMES-PSREAFTAGMHLAAIFALSLFWCVQLAHRQRLQARTGIARYDLQSEGATRWVSCAWGMGCLGAVCLFLGASIHGDPKNSWSPRGIAHLTLFACAAVGLLGQAICTFWVVLKARRVFVVSNADLVSYRRKKFLSWLMVATGVAAVTSVLLLEC-------------------------------FVDK--ALGGQGGGVDGSSGGRNCDKEWCYSRSALGLWEWVFILEEAAFCVQLRHDLSPATAGVGVESFVL 697
            +PT+T+LGM + P    F AG+ LAA+ A+ LFWCV+LAH QRLQARTG+ARYD+++EGA RWVS AW  G LGA+ ++  AS+ G+   S+SP+G+ HL L   AA G+LGQA+CT W + KAR VFVVS+ DLV+Y+RK +L+         AV SVL++EC                               F D+  A+G Q    D  S  R+CD EWCYSRS LGLWE++ +  EA FC+ LRHDL+PAT GVGVESFVL
Sbjct:   67 IPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIVAAVAVLSVLIVECVEGGTWNMGWSIRGGAGAFVGGGGSSSGVGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14934.2937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE4_ECTSI1.110e-7349.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14934contigH-paniculata_contig14934:1721..5677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001590.1
Exons3
Model size1985
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14934.2937.1prot_H-paniculata_contig14934.2937.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14934 1731..4392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.7162275-UTR-H-paniculata_contig14934:1720..17301622929194.7162275-UTR-H-paniculata_contig14934:1720..1730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14934 1721..1730 +
1691480765.5586998-UTR-H-paniculata_contig14934:1720..17301691480765.5586998-UTR-H-paniculata_contig14934:1720..1730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14934 1721..1730 +
1622929194.9336953-UTR-H-paniculata_contig14934:4392..56771622929194.9336953-UTR-H-paniculata_contig14934:4392..5677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14934 4393..5677 +
1691480765.59969-UTR-H-paniculata_contig14934:4392..56771691480765.59969-UTR-H-paniculata_contig14934:4392..5677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14934 4393..5677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.8218102-CDS-H-paniculata_contig14934:1730..18191622929194.8218102-CDS-H-paniculata_contig14934:1730..1819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14934 1731..1819 +
1691480765.5691042-CDS-H-paniculata_contig14934:1730..18191691480765.5691042-CDS-H-paniculata_contig14934:1730..1819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14934 1731..1819 +
1622929194.8359916-CDS-H-paniculata_contig14934:2698..29711622929194.8359916-CDS-H-paniculata_contig14934:2698..2971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14934 2699..2971 +
1691480765.5789864-CDS-H-paniculata_contig14934:2698..29711691480765.5789864-CDS-H-paniculata_contig14934:2698..2971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14934 2699..2971 +
1622929194.9193733-CDS-H-paniculata_contig14934:4064..43921622929194.9193733-CDS-H-paniculata_contig14934:4064..4392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14934 4065..4392 +
1691480765.588355-CDS-H-paniculata_contig14934:4064..43921691480765.588355-CDS-H-paniculata_contig14934:4064..4392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14934 4065..4392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14934.2937.1

>prot_H-paniculata_contig14934.2937.1 ID=prot_H-paniculata_contig14934.2937.1|Name=mRNA_H-paniculata_contig14934.2937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MTRLGMESPSREAFTAGMHLAAIFALSLFWCVQLAHRQRLQARTGIARYD
LQSEGATRWVSCAWGMGCLGAVCLFLGASIHGDPKNSWSPRGIAHLTLFA
CAAVGLLGQAICTFWVVLKARRVFVVSNADLVSYRRKKFLSWLMVATGVA
AVTSVLLLECFVDKALGGQGGGVDGSSGGRNCDKEWCYSRSALGLWEWVF
ILEEAAFCVQLRHDLSPATAGVGVESFVL*
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mRNA from alignment at H-paniculata_contig14934:1721..5677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14934.2937.1 ID=mRNA_H-paniculata_contig14934.2937.1|Name=mRNA_H-paniculata_contig14934.2937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3957bp|location=Sequence derived from alignment at H-paniculata_contig14934:1721..5677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCCTACAATGACTCGACTCGGCATGGAAAGTCCTAGCCGCGAGGCCT
TTACGGCGGGCATGCACCTTGCTGCAATTTTTGCCTTGTCTCTGTTCTGG
TGAGACTCGTCGCTTCTCGCGTAACTCTCCCCTGCTTTTAGAGTGTGAAC
GGGCACTGTGACCGAATTGTCGTACCACAACTGTATGCCGGTAGTTTTGC
AGTTTTTTTGTTGTTGTCTGTCGTCTCTTCGAAGTGTTCACCCTCTGGAC
AAATACGAATAATTGACGCATTCGCCACGAAATGAAATGTTACTCGTATG
AGTTTCAGAATGAGCGGACAAGAGTAAGCACTCCCGTCCATTGGATTTAC
GAGTATAATTAGCAGTTGTGGATGGTCCGGGGCACATAGAACACACGAGC
TCATTTCTGAAACTCAGGCGAATACTTTAAAAATTTCGTGGCGAATACGC
CAATTATTCGTATTTCTCCGGGACGTGAAAGTGTTACCACACAAAGTCCC
CGCTACCCCCCATCGAGAACCTTATGTCATCACTATGTCGATAAGGGTCC
TAGTGCTTTATGCGCTGCTTCCTTCGAGGGTGTGTGGTCGACGGTCCAGT
AGCTAAGGTGTTCAAAACACGAGTTTGCGCCCCCGCCTCCTACCGCTATA
AATTAGAGGTTAAAGTACATGTTGATTTTCCGTGGTCCGGCATGTTTTGA
TGCCAGCTGAAGCAAGCTGCAGAGGGGCTGGTTCAGTTGCCTGCCCCAGC
CCATCTCCTGACATTCGTTATTATCATGTACCAGTATATGAATGTATCCC
CAAACATTGCTTGATCGATCGTGATACTAAAATTTGTTAACAAAGTTACA
GGCCTGTTCGGGTCATTCTCTTCTTGCTTGGAAACGTTGTCTTGCTGTCT
GGGTCCCAGTCCCCCCCTTGCGCCCTCCCCCCCCCCCCTCCCTTTCAATT
ATATTTTTCAACCCCATTTTTCAACCAGGTGCGTTCAACTGGCGCATCGG
CAGCGGCTGCAGGCGCGAACGGGTATCGCACGGTATGATCTTCAATCCGA
GGGGGCGACTCGATGGGTGTCATGCGCATGGGGCATGGGGTGCCTCGGGG
CTGTGTGTCTCTTCCTGGGAGCTAGCATACACGGGGACCCGAAGAATTCG
TGGTCGCCGAGGGGAATCGCACACCTGACCCTTTTTGCATGTGCCGCCGT
GGGTCTCTTGGGTCAAGCGATCTGCACGTTTTGGGTAGTCCTTAAGGCCA
GGTGAGCAAGCGAGGGGGAGATGTACCATCGGTCTCTCAGTAAGTGGGTG
CTAAGATTTCGTTGCTTCTTCGCGTTATGGTATTCTACTGGGTGCTGACA
AGTACGCGCAGCTTTGAGATGCAAATTACGTGACCCCAACGTGATACGAG
CGTACGCGTGGAAATTCCGACATGACCAGACAGGTGAAGCTGTGTTTGAG
GGTATTTTGTTTATCTTTTGCCTTTTCGACTCCTACAGACAGCAAAGTAC
GTAATTCCTCTGTTTCTTGAGCATACTCAGTTATGATTATAGTCGAAAAG
AGGCCTTTTTTGGGACTTTTTCCCATGAAACGAAAAAAACTGCACTTTTT
GGCGTTTTCGGCGGTGTACTTTTTTCCACGGCCTGTGTTTTGGTGTTGAA
AATCAGCTAATTGATTCGATATTTTGGGGTTTGACCCCCCAAAACATGTA
GGATTCTAATTTAGCCTAAGTGCGTCTCTTATCACGATATACTGTACTTG
TGCGATAGTACCAAAAATCCCAAAAAAGGACTTTTTTTCGGCCGAGTACG
TTTTTTTCACGGCCCGTGTCTTGGTATTTAAAGTCAAATATTTGACCCAA
AAACTCGGCTTTCAACGCAACTACATGTAGAATCCCATTAAAAGAATAAG
AAAATAAATCAGAGATACTTAAGTGCCTCTATAATCGTAGCTGAGTATAC
CTATGAGAAAGGAAAAATTTGGTTTCCTAGTTCCCCTTCATGAAGTTCTC
GTAGTTCCTCAGTGCGCGCGCGCTGTGCGGTATATAGTAGCGAACTGCGG
AACATTGGAGGGTGCGATAGAGAGACTTTTATAACGTGCAACCTCGAAAC
GACGGTGGTGGGAGATGCAGAGAATCGAGAATAGCCTGAAAGGCCGACGG
CTAGTGTGAGCAGCATAGATGTCACCTTTTTGAGCCTCCTTTGTAGCAAG
AAGGAGCGACTTGCCATCGAAGGTCGCTCTTATAGGAACAAAGCTCCGTC
CGTTCGAGGATCCTTGGTCAATGGCCTGGCATCTGAGGTATACAATGCAT
GACCTCGCCCTCTCCCGTGCGCACGCGCGATATGTATACCCCAGACGCGT
ATTTGTGGTCTCCAATGCCGACTTGGTATCCTATCGGCGAAAGAAGTTCT
TGTCTTGGTTAATGGTGGCGACCGGGGTAGCTGCGGTAACTTCTGTGCTG
CTCCTCGAGTGCTTCGTGGACAAGGCATTGGGAGGTCAGGGTGGAGGAGT
GGATGGTAGTAGCGGCGGGCGGAACTGCGACAAGGAGTGGTGCTACTCTC
GCAGCGCTCTGGGTCTGTGGGAGTGGGTTTTCATTCTGGAGGAGGCCGCG
TTTTGCGTGCAGCTGAGGCATGACCTTTCGCCGGCCACGGCGGGGGTCGG
GGTAGAGAGCTTCGTGCTTTGACATGTGGGGGTGGTCATGATTGTTATAT
GAATATGATTGTGGTTGTTATTGTCATCATTGTCATTGCTATTTGTTTGT
TTTGTTGCGGGAGAGCCATGTCGCGAGATTTGGCACTTGGATTGTGTTCA
GAACCGGGAACAAGGAAATGTGCACGTTTTTGAACATTCACGTTTTCCTA
CCTCGTATGTATGTAGCTTTAGGGTAATAAATATTCAAGAGGCGAGCGGT
CAGTGGCTTAAAAATCTCCCCAGGAGGACCAACGGTCGACGACATATAAA
AAAATAGAGTTCCTGATCTGAGGAATTTCCTAACAGATGATGACCAGTAG
CATATTAGTCAACCCCCCAAAATAAATTGATGTCCGAGAGGGCTCCCACG
TCGGACGTCCTACGGTTCAAGTGCATTCGAGCGAAGGCTGCGGGGTGATC
AATTGCCGGGAATTTTTGAGGCGCTTGACCGTCACACTGCCGCAGTTTGC
AACCCGCGCTATGCAGCGCAGCCGTCGCCACTTTTTCTCTTTGCTTTTAC
TATGGCGCTAGATACTTTGGAGTAAACTTCAATATGCTTTTCGGACTTTG
CAGGTTCTACGGGATAGGTTTTCTCTTTCCACGTTCGATTAAGCTTGGTT
GTTCGTCTCCATGCACAATGTGGGGCAAGGACGTCTGTAGTATGTCGAAT
GCACCTCGTTTTGTACGGTACAGTACAATAGATTGCTTCTTAGAGTACGG
CAAAGGCGTTGGTCAATTTTGTTGGGGGTCTACGATATAACATGCGTGGA
GCTAGCTATTCGTCGAGAGCTCTGTGGAGTTGTCTGAGATGATATAGCCC
TCTCTTGTACCTCTATCTCACTTACGAGTAATACTGTCAGTATCATTTTT
TCGTGGTGCAAGATTTCTAAAGAATGCTATGACGTAAATTTTCCGTTAGT
TGGTTCCTAGAGCCTGTGTATCGCTTTTGTTTGCTTGTGTAGCTCGTGGC
GGCAATCATGAACTTGCACGGGGATTTGTGTACGTTCGTTTTGGATAGTT
CGCAATCTCCTCAAAGTTGTAAACGAACCAGAAGGCCTCTCGTCGTGCGA
AAATTTTCATCTATCAAATAATTATGAAGAAAACCATTCAGTTTACATAA
GAAAAGTCTCAGAATTGCGAGTTAACACGAGTTTCCCCCTCAAACTAGTA
GTATCGTCTACGGCTATTCGATCGGTTTTGTAGATGTCGAGTTCGTTTGT
TTGGGGCTCGCCAGGTCTTGATGCCTTGATGCCTACCTAGGATAGACCAT
TGATGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig14934:1721..5677+

>mRNA_H-paniculata_contig14934.2937.1 ID=mRNA_H-paniculata_contig14934.2937.1|Name=mRNA_H-paniculata_contig14934.2937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig14934:1721..5677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCGACTCGGCATGGAAAGTCCTAGCCGCGAGGCCTTTACGGCGGG
CATGCACCTTGCTGCAATTTTTGCCTTGTCTCTGTTCTGATGACTCGACT
CGGCATGGAAAGTCCTAGCCGCGAGGCCTTTACGGCGGGCATGCACCTTG
CTGCAATTTTTGCCTTGTCTCTGTTCTGGTGCGTTCAACTGGCGCATCGG
CAGCGGCTGCAGGCGCGAACGGGTATCGCACGGTATGATCTTCAATCCGA
GGGGGCGACTCGATGGGTGTCATGCGCATGGGGCATGGGGTGCCTCGGGG
CTGTGTGTCTCTTCCTGGGAGCTAGCATACACGGGGACCCGAAGAATTCG
TGGTCGCCGAGGGGAATCGCACACCTGACCCTTTTTGCATGTGCCGCCGT
GGGTCTCTTGGGTCAAGCGATCTGCACGTTTTGGGTAGTCCTTAAGGCCA
GGTGCGTTCAACTGGCGCATCGGCAGCGGCTGCAGGCGCGAACGGGTATC
GCACGGTATGATCTTCAATCCGAGGGGGCGACTCGATGGGTGTCATGCGC
ATGGGGCATGGGGTGCCTCGGGGCTGTGTGTCTCTTCCTGGGAGCTAGCA
TACACGGGGACCCGAAGAATTCGTGGTCGCCGAGGGGAATCGCACACCTG
ACCCTTTTTGCATGTGCCGCCGTGGGTCTCTTGGGTCAAGCGATCTGCAC
GTTTTGGGTAGTCCTTAAGGCCAGACGCGTATTTGTGGTCTCCAATGCCG
ACTTGGTATCCTATCGGCGAAAGAAGTTCTTGTCTTGGTTAATGGTGGCG
ACCGGGGTAGCTGCGGTAACTTCTGTGCTGCTCCTCGAGTGCTTCGTGGA
CAAGGCATTGGGAGGTCAGGGTGGAGGAGTGGATGGTAGTAGCGGCGGGC
GGAACTGCGACAAGGAGTGGTGCTACTCTCGCAGCGCTCTGGGTCTGTGG
GAGTGGGTTTTCATTCTGGAGGAGGCCGCGTTTTGCGTGCAGCTGAGGCA
TGACCTTTCGCCGGCCACGGCGGGGGTCGGGGTAGAGAGCTTCGTGCTTT
GAACGCGTATTTGTGGTCTCCAATGCCGACTTGGTATCCTATCGGCGAAA
GAAGTTCTTGTCTTGGTTAATGGTGGCGACCGGGGTAGCTGCGGTAACTT
CTGTGCTGCTCCTCGAGTGCTTCGTGGACAAGGCATTGGGAGGTCAGGGT
GGAGGAGTGGATGGTAGTAGCGGCGGGCGGAACTGCGACAAGGAGTGGTG
CTACTCTCGCAGCGCTCTGGGTCTGTGGGAGTGGGTTTTCATTCTGGAGG
AGGCCGCGTTTTGCGTGCAGCTGAGGCATGACCTTTCGCCGGCCACGGCG
GGGGTCGGGGTAGAGAGCTTCGTGCTTTGA
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