prot_H-paniculata_contig14934.2937.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig14934.2937.1
Unique Name	prot_H-paniculata_contig14934.2937.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	230

Homology

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BLAST of mRNA_H-paniculata_contig14934.2937.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 4.430e-77
Identity = 130/263 (49.43%), Postives = 167/263 (63.50%), Query Frame = 0

Query:    1 MTRLGMES-PSREAFTAGMHLAAIFALSLFWCVQLAHRQRLQARTGIARYDLQSEGATRWVSCAWGMGCLGAVCLFLGASIHGDPKNSWSPRGIAHLTLFACAAVGLLGQAICTFWVVLKARRVFVVSNADLVSYRRKKFLSWLMVATGVAAVTSVLLLEC-------------------------------FVDK--ALGGQGGGVDGSSGGRNCDKEWCYSRSALGLWEWVFILEEAAFCVQLRHDLSPATAGVGVESFVL 229
            +T+LGM + P    F AG+ LAA+ A+ LFWCV+LAH QRLQARTG+ARYD+++EGA RWVS AW  G LGA+ ++  AS+ G+   S+SP+G+ HL L   AA G+LGQA+CT W + KAR VFVVS+ DLV+Y+RK +L+         AV SVL++EC                               F D+  A+G Q    D  S  R+CD EWCYSRS LGLWE++ +  EA FC+ LRHDL+PAT GVGVESFVL
Sbjct:   70 LTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIVAAVAVLSVLIVECVEGGTWNMGWSIRGGAGAFVGGGGSSSGVGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 332

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig14934.2937.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig14934.2937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FIE4_ECTSI	4.430e-77	49.43	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 92..118
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 13..35
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 36..55
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 81..91
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 139..158
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 119..138
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 159..229
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 56..80
None	No IPR available	TMHMM	TMhelix		coord: 59..81
None	No IPR available	TMHMM	TMhelix		coord: 15..34
None	No IPR available	TMHMM	TMhelix		coord: 96..118
None	No IPR available	TMHMM	TMhelix		coord: 139..158

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig14934	contig	H-paniculata_contig14934:1731..4392 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig14934.2937.1	mRNA_H-paniculata_contig14934.2937.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig14934 1721..5677 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig14934.2937.1 ID=prot_H-paniculata_contig14934.2937.1|Name=mRNA_H-paniculata_contig14934.2937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MTRLGMESPSREAFTAGMHLAAIFALSLFWCVQLAHRQRLQARTGIARYD
LQSEGATRWVSCAWGMGCLGAVCLFLGASIHGDPKNSWSPRGIAHLTLFA
CAAVGLLGQAICTFWVVLKARRVFVVSNADLVSYRRKKFLSWLMVATGVA
AVTSVLLLECFVDKALGGQGGGVDGSSGGRNCDKEWCYSRSALGLWEWVF
ILEEAAFCVQLRHDLSPATAGVGVESFVL*