mRNA_H-paniculata_contig14929.2933.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: D8LDY9_ECTSI (Channel voltage activated chloride channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY9_ECTSI) HSP 1 Score: 199 bits (505), Expect = 1.240e-62 Identity = 102/156 (65.38%), Postives = 117/156 (75.00%), Query Frame = 1 Query: 1 LPFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGGDILVGTILRKCLMILLHEKAFGPEDSLGTNAATGRPQVVSAVA---------------ASGRISPLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 LPFLEDE PSVA +NDMTASQAMSRRVRCLRPLERAGAV DTL++C+HDCFPVVDD+GGD+LVGTILRKCLM+LLH+KAFGP +GT G+ SA AS ISP +SW AME +YPRYPTIES+ LS+ ERR W+D Sbjct: 35 LPFLEDECPSVARQNDMTASQAMSRRVRCLRPLERAGAVFDTLNACQHDCFPVVDDEGGDVLVGTILRKCLMLLLHQKAFGP---VGTELGDGQQNSRSAARQHQGRXXXXXXXXXDASLGISPPISWGAMERIYPRYPTIESIDLSDAERRMWMD 187
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: A0A836CAG3_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG3_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.390e-33 Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 1 Query: 1 LPFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGGDILVGTILRKCLMILLHEKAFGPEDSLGTNAATGRPQVVSAVAASGRISPLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 LPFLEDE+P++A++ ++TA Q M+ V+CLRP+ER G V D L + EHDCFPVVD Q G++L+GT+LRKCL +LL + F P RP V++E +E YPRYPTI+ + ++ ++R+ W+D Sbjct: 486 LPFLEDELPALAAKGEVTAGQIMTTTVKCLRPIERVGYVYDALRNTEHDCFPVVDTQTGNVLMGTVLRKCLCVLLQRRHFSPNRGYSRGE---RP---------------VTFETLEKDYPRYPTIQEITIANDDRQSWLD 608
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: A0A7R9ZRT7_9STRA (Chloride channel protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRT7_9STRA) HSP 1 Score: 121 bits (304), Expect = 8.020e-31 Identity = 60/141 (42.55%), Postives = 80/141 (56.74%), Query Frame = 1 Query: 1 LPFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGGDILVGTILRKCLMILLHEKAFGPEDSLGTNAATGRPQVVSAVAASGRISPLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 +PF+E EVP +A R+++ A Q MS +V+CLRP+ERAG V L H FP+VD G L GT R L LL +AFG D L + G R+SPLV W+ +E YPRYPTI+ V + E ++ W+D Sbjct: 110 IPFMEPEVPPIAERHEIVAGQVMSTKVKCLRPVERAGLVYQLLKESSHGTFPIVDAASGGTLYGTASRAMLCTLLQRRAFGSPDVLEEDDINGS-------LGPRRLSPLVQWDTIERAYPRYPTIDDVDMRESDQNCWLD 243
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: B8LCA7_THAPS (Chloride channel protein (Fragment) n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8LCA7_THAPS) HSP 1 Score: 118 bits (295), Expect = 3.930e-28 Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 1 Query: 1 LPFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDD---QGGDILVGTILRKCLMILLHEKAFG-PEDSLGTNAATGRPQVVSAVAASGRISPLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 +PFLE EVP++A R+++ A Q MS V+CLRP+ER G V D L + +H FP+VD L GT R L LL +AFG P D LG R+SPLV W+ +E VYPRYPTI+ V L +R W+D Sbjct: 502 IPFLEPEVPTIAERHEIVAGQVMSTEVKCLRPVERVGIVYDLLKNVQHGNFPIVDTGELTSSGTLYGTASRSMLCTLLQRRAFGQPHDMLGPK----------------RLSPLVQWDTIERVYPRYPTIDDVELRPGDRNCWLD 630
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: K0RAV9_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAV9_THAOC) HSP 1 Score: 105 bits (261), Expect = 4.150e-26 Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 40 RNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGGDILVGTILRKCLMILLHEKAFGPEDSLGTNAATGRPQVVSAVA---ASGRISPLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 R+++ A Q MS V+CLRP+ER G V D L + H FP+VD L GT R L LL +AFG + +P VA R+SPLV W+ +E VYPRYPTI+ ++L + +R W+D Sbjct: 2 RHEIVAGQVMSTEVKCLRPVERVGIVYDLLKNVSHGNFPIVDTASSGTLYGTASRTMLCTLLQRRAFGQPLEVNNGHYHPKPDGADDVAELLGPKRLSPLVQWDTLERVYPRYPTIDDIKLRQNDRNCWLD 132
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: A0A4D9D9F8_9STRA (Chloride channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9F8_9STRA) HSP 1 Score: 111 bits (278), Expect = 8.460e-26 Identity = 58/141 (41.13%), Postives = 88/141 (62.41%), Query Frame = 1 Query: 4 PFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGGDILVGTILRKCLMILLHEKAFGPEDSLGTNAATGRPQVVSAVAASGRI-SPLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 P LE ++P A +N M A++ MS + R +ER + D+L+S EHDCFPV++ + G++LVGT+LRK L ++L KAF T+ T P S+ GR+ SPL+ W +E +YPRYP I+ +R++ E+R+ ID Sbjct: 740 PVLEPDMPPAARKN-MIAAEIMSASPKTFRRVERVSTIYDSLASTEHDCFPVLNAEDGNVLVGTVLRKALCVILQHKAF-------THPDTFSPLSESSHREKGRLFSPLLDWPTLEKIYPRYPNIQDIRITVEDRQCVID 872
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: A0A7S2CPI8_9STRA (Chloride channel protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPI8_9STRA) HSP 1 Score: 105 bits (263), Expect = 7.090e-24 Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 1 Query: 1 LPFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGGDILVGTILRKCLMILLHEKAFGPEDSLG---------TNAATGRPQVVS-AVAASGRISPL-VSWEAMESVYPRYPTIESVRLSEEERRGWID 423 +PFLE ++P A ++TA MS ++P+ R GA+ LSSC+HDCFPVVD Q GDILVGTILR+ + +LL +A+ PED++ N A +P + G+ S V W+ + +YPR+P I VR++ +ER +D Sbjct: 301 IPFLEGDLPIDALDAELTAGHVMSSGCVTMQPMMRVGALQSILSSCDHDCFPVVDPQRGDILVGTILRRTICVLLKHQAWFPEDAMHCDDDLDMSKANLAKKQPSAWAWRSQKQGKSSAFPVGWDEIGQLYPRFPEIWQVRITPQERELVVD 452
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: A0A7S2B9U1_9STRA (Chloride channel protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B9U1_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.940e-22 Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 1 LPFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGGDILVGTILRKCLMILLHEKAF--GPEDSLGTNAATGRPQVVSAVAASGRISPLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 +P LE E+ + + +T + MS+ V CLRP E+ +++ L C+ +CFPVVD G +L GT+LRK L LLH++A+ GP + + + R S S P++++E +ESVYP YP+I + +S EE W+D Sbjct: 194 MPMLEPELEAELAPYHLTVEKIMSKDVECLRPFEKVRILMELLRDCDFECFPVVDPSG--LLCGTMLRKHLTTLLHQRAYVPGPTPKIDSESFIKRDDESSGPPIS---PPIITYEILESVYPNYPSIHDINISGEELDYWLD 331
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: A0A7S2YH57_9STRA (Chloride channel protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YH57_9STRA) HSP 1 Score: 100 bits (249), Expect = 5.520e-22 Identity = 56/152 (36.84%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 7 FLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGGDILVGTILRKCLMILLHEKAFGPEDSLGTNAAT------GRPQVVSAVAASGRIS-------PLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 F+E E+ SV +D+TA Q MS +V RP+E+ ++DTL SC H FPVVD + G +L GTI R L +LL ++AFG + G N + G + SA+ + + PLV W +E+ YP++P +E VR + +R +D Sbjct: 319 FMESELKSVPRHHDLTARQIMSDQVVFFRPVEKVSNIIDTLHSCNHSFFPVVDPEDGGVLSGTIGRNELCVLLQQRAFGHPNEDGENGNSHHYKSGGLARQSSAMIYNNYMEYQGKHFFPLVEWNVLENAYPKFPKVEDVRFHDGDRDCLMD 470
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Match: A0A836CM41_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM41_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.440e-20 Identity = 52/150 (34.67%), Postives = 83/150 (55.33%), Query Frame = 1 Query: 1 LPFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCFPVVDDQGG---------DILVGTILRKCLMILLHEKAFGPEDSLGTNAATGRPQVVSAVAASGRISPLVSWEAMESVYPRYPTIESVRLSEEERRGWID 423 +PFL+ + P + ++ Q M++ V+CL+P+E V TL SC+H+CFPV+D + +L+GTILRK L++LL + F P + +A+ RP P+++W +E YP+YP +E + LSEE+ R ID Sbjct: 433 IPFLQHQPPESIRQQNVRVHQIMTQEVKCLQPVETVERVYRTLRSCDHNCFPVIDGESRPFRRRYTLRSVLLGTILRKTLLVLLARRRFAPPSA--DDASMPRPL------------PVLAWGDLEGRYPKYPRMEHLDLSEEDGRCLID 568 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14929.2933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14929.2933.1 >prot_H-paniculata_contig14929.2933.1 ID=prot_H-paniculata_contig14929.2933.1|Name=mRNA_H-paniculata_contig14929.2933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp LPFLEDEVPSVASRNDMTASQAMSRRVRCLRPLERAGAVLDTLSSCEHDCback to top mRNA from alignment at H-paniculata_contig14929:3243..3885- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14929.2933.1 ID=mRNA_H-paniculata_contig14929.2933.1|Name=mRNA_H-paniculata_contig14929.2933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=643bp|location=Sequence derived from alignment at H-paniculata_contig14929:3243..3885- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14929:3243..3885- >mRNA_H-paniculata_contig14929.2933.1 ID=mRNA_H-paniculata_contig14929.2933.1|Name=mRNA_H-paniculata_contig14929.2933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig14929:3243..3885- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |