mRNA_H-paniculata_contig1492.2931.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1492.2931.1
Unique NamemRNA_H-paniculata_contig1492.2931.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1492.2931.1 vs. uniprot
Match: D7G991_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G991_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.790e-21
Identity = 40/57 (70.18%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    7 RPAFGKRVLVKF-DGIFYPGTINTEGESARDRKHSRGRWGVLFDDCTRDRFEDNASD 174
            +PAFGKRV+V+F DGI+YPGTI+T+G+SA+D  H++GRWGVLFDDCT+DRF D A+D
Sbjct:   14 KPAFGKRVMVEFEDGIYYPGTISTDGDSAKDIYHAKGRWGVLFDDCTKDRFHDGATD 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1492.2931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G991_ECTSI3.790e-2170.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1492contigH-paniculata_contig1492:25877..26077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.210002-CDS-H-paniculata_contig1492:25876..260771622929194.210002-CDS-H-paniculata_contig1492:25876..26077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1492 25877..26077 +
1691480765.286529-CDS-H-paniculata_contig1492:25876..260771691480765.286529-CDS-H-paniculata_contig1492:25876..26077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1492 25877..26077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1492.2931.1prot_H-paniculata_contig1492.2931.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1492 25877..26077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1492.2931.1

>prot_H-paniculata_contig1492.2931.1 ID=prot_H-paniculata_contig1492.2931.1|Name=mRNA_H-paniculata_contig1492.2931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MFRPAFGKRVLVKFDGIFYPGTINTEGESARDRKHSRGRWGVLFDDCTRD
RFEDNASDGACTCIVF*
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mRNA from alignment at H-paniculata_contig1492:25877..26077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1492.2931.1 ID=mRNA_H-paniculata_contig1492.2931.1|Name=mRNA_H-paniculata_contig1492.2931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig1492:25877..26077+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAGGCCCGCGTTCGGTAAGCGAGTGCTGGTCAAGTTCGACGGTAT
ATTTTACCCGGGAACGATCAATACGGAGGGGGAGAGCGCGCGGGACCGAA
AGCACTCTCGGGGGAGATGGGGCGTCCTATTTGACGACTGCACTCGAGAT
CGATTCGAGGACAACGCTAGTGACGGTGCGTGTACATGTATTGTTTTCTA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig1492:25877..26077+

>mRNA_H-paniculata_contig1492.2931.1 ID=mRNA_H-paniculata_contig1492.2931.1|Name=mRNA_H-paniculata_contig1492.2931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig1492:25877..26077+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAGGCCCGCGTTCGGTAAGCGAGTGCTGGTCAAGTTCGACGGTAT
ATTTTACCCGGGAACGATCAATACGGAGGGGGAGAGCGCGCGGGACCGAA
AGCACTCTCGGGGGAGATGGGGCGTCCTATTTGACGACTGCACTCGAGAT
CGATTCGAGGACAACGCTAGTGACGGTGCGTGTACATGTATTGTTTTCTA
AATGTTCAGGCCCGCGTTCGGTAAGCGAGTGCTGGTCAAGTTCGACGGTA
TATTTTACCCGGGAACGATCAATACGGAGGGGGAGAGCGCGCGGGACCGA
AAGCACTCTCGGGGGAGATGGGGCGTCCTATTTGACGACTGCACTCGAGA
TCGATTCGAGGACAACGCTAGTGACGGTGCGTGTACATGTATTGTTTTCT
AA
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