mRNA_H-paniculata_contig1491.2926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1491.2926.1
Unique NamemRNA_H-paniculata_contig1491.2926.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1491.2926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1491contigH-paniculata_contig1491:15087..21780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.3761895-CDS-H-paniculata_contig1491:15087..152871622929193.3761895-CDS-H-paniculata_contig1491:15087..15287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1491 15088..15287 -
1691480764.9126322-CDS-H-paniculata_contig1491:15087..152871691480764.9126322-CDS-H-paniculata_contig1491:15087..15287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1491 15088..15287 -
1622929193.3933039-CDS-H-paniculata_contig1491:21692..217801622929193.3933039-CDS-H-paniculata_contig1491:21692..21780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1491 21693..21780 -
1691480764.929867-CDS-H-paniculata_contig1491:21692..217801691480764.929867-CDS-H-paniculata_contig1491:21692..21780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1491 21693..21780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1491.2926.1prot_H-paniculata_contig1491.2926.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1491 15088..21780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1491.2926.1

>prot_H-paniculata_contig1491.2926.1 ID=prot_H-paniculata_contig1491.2926.1|Name=mRNA_H-paniculata_contig1491.2926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
LRDIGKTTGNDRVVKKQRMERRRTSTGLKERRLPSPQGSARSELLCDSMV
GGVARPASRHRTSRDEAADTPVAPMSSWSLNPVPREDDAAGAGAGA
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mRNA from alignment at H-paniculata_contig1491:15087..21780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1491.2926.1 ID=mRNA_H-paniculata_contig1491.2926.1|Name=mRNA_H-paniculata_contig1491.2926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6694bp|location=Sequence derived from alignment at H-paniculata_contig1491:15087..21780- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGGGATATCGGCAAAACAACAGGCAACGACAGAGTCGTGAAAAAGCA
GAGAATGGAAAGGCGGCGGACATCGACAGGGTTGAAAGGTGTGACCAGGC
CGCGAGCTACGCGTTTTTTTCGTATATGTATCAGCAGAAAAAGTGAGCAA
CGCAAGTAATATTTGCGACGTGAAAAACAAACCCAACCGTCGATTAGACA
TGGACACTTCCTGGACAAAAAACATGCCTGTAGGGTTAGCTATATAGGTT
GTACCCTTTGCCTCCTCAAATGCCTAGCTGATTTAATGAGTTCCGCCAGC
TGCTTTCCTAGCTGCTGCTGTTGCCTACCTTTGGCGGTATGCCGGCCACA
TGGCTCTGATTGTGTCATCGCTGCGTGTTGACACCATCCTGATGCAAATG
TTGGCTTGTTGCAGCATCTTCTCTCTTTACCCTGCATCACTACTGATTGC
TGATTGTGTGGGTTCTGGCAACGTCTGTGCGTCGAACATATCTGACGACT
TTTAAAAACTTGCCTCAACTATACTCGGAGGTAATCTACAGAGAGCACGA
GAGTTTTACAGGGTTTACTTCTAAGAACCGACACACCCATTCCGCTATTA
CCTGCTGTAGCACCCCCTGCTCTAGTGAGTATTGAATCAAGCTGCAATCA
AGGCGTAGTTCTGGAAATGGACTTCTTCCTCTGTAGCACTGAAAGCGCCC
CGCGTGCAGTATGTATGGGTTGCCGGTAAAATCGTGTTCGGTCGTTGATG
ATTTTCTGCTTCACACCAACAGTGCAGATAGTTGAACCCTCGGCGGATCT
GCCTTCGGTCTCCATATCATGCTGGCACACCAACACGAGAGATGACATGT
CCCAACCTTGATTTTCGAAACATATAACTGTATCGTAAATGTCGTGAACT
TCAGCTAAGATGCGACCCCTTGCCCCCGCGAGGAAGAAATCCTGAATAAA
AACAGCTCGACTTTTTTTAGGATAAAGCACGAAGTGCTTGACTCCTTTAC
TCGAAGACTAAATTAGCGGTGTAAGCGATGTTCACATCTTGACCATCATC
TGCGCGGAGCGGCGTAACTAGGCCTTGGATTTACTTACACGGATATGTTT
CGCGTTTGGGAGTATTCATCGCAGTAGGGAGGTGCTCCCTCGAATCAACG
TTAAAAAGGCCTCGGAATAAGCCAGTAGCAGTAAGGACAATATACGGGTA
AATGATCTCACTGTCTACTTTGCTGTCAACATACCGCACCAACGCACCGG
TAAGTATCACAGTAAACATGTACACAAAATTGATGTTCGAGCAAAACATA
TTCACTTACATACCCCCATGATACCGCGTATGGTAGCGAAACTATTTCTG
GTGGCTCAGGATTATAGAGTGAGGGTGAAAATATATAGTTATATTGTTCG
CGCGAAATGCGACATTTTTTTAGAACTCCATGTGACGTACGTGATTTTTG
TAGTGGCTACTGCTGGTTGTATCGTTGTTTTCGCTGACATGCTGCGGACA
TGATACCATACTGTTTGCATATTGATGATGCAGTCGCGTTTTTCTGAGCG
TGCCCACGTAGCCGCAGCAAGTTCGATGAACATGACACATTGTTGCTTGC
TGTGTTCATTTTAAACGACAGATTGTGTCGGGGCGTGTGTTTCACAAGAC
TCATGATACAGCCGCGGAGGCTACGATCGATGTTCCAAATGAGATTACCT
CATTTTTGGAAGAAAGGCGCTTAACGGTACAATTGATGAGTGATTACCTA
CTACACCAGCAATCGAACACGATTGACTCCAACCACGCTATGGAAAAAAT
AGCAGCTATTGACCCTAACCAGGAGCGCAGCCAGTCACTGCACATGTGAG
TTCAAGCGCCACGACATATAGCACACGTGCAAGCCGGCATAACGCGCTTC
TCAAGTGCTGCATTGAACACGCTCTCCGCCTGAAAGTTACGCCTCAAGCT
GACAGGTATATCGCACGATTGTTTCCTTCGACCAATCTTGAGCTTTTCCG
GGCCTGCTGTGCTGTCAGAAGCCTCTCATCAACCGTTGCTGCTTTGCTGT
TTGCTTGGCCGACGCGGCAAGGGCACTCTTGCTTTCAGGCTTCTTGTTTT
TGCTCCCAGCCTTGTTCTTAGTACCCTTGGTTCGACCCATGGTGTCATGT
AACCGCCTGCTCGGCTCTCTCTCACACTATTATCGTGGCGCCACACTTGC
TACGGGGCTGTTGTTTGTCTGTGTGTCGTCTGATGTCTGTGGGTCTACTG
CGGGTAATATACTGTAAATACACTGCAGGGGCGGTCTAAAAGGGGGTCAA
AAAGCATGCGGCGGAGCTCCAGACCAATGAAAGCACGGCCGCCACTCAAG
GTTGAGTGGCGGTTCTGTCTCTGATTTGCCGTAATTCGCCGCATGCGACG
GGATGGAACCAATCAAAGGTTTCTGAAATAAAAAAAAGACGTTTCTGACT
GGCTGCAACTCAAGAATGAACCCTACCTATGATTCCAGTCTATTTTTTGT
TGCTTCAGTAAATTGGGTGATGGCTGGAGGATGATCGATGGTCTTAGTTT
TTGAGAATGGGAAAGTCAAGATACAGAAGTGCTTTAGTGTGCTGCCTCGC
GCGTCTCTCACCGCAATACATATACTGCTTGAACATGTTACCAAGCGAAA
TAGAGCCCTTTTCGAAGTTACCAGCCACTGTAAGTGGGTCGTGGTATCTC
TTCTGGATGTTGGGTACGCTGGCGTGGTTGTGCCCGTGCTTCTAGTTGTG
TGGTGTTTTAGCCCCGGCAGTGATTGCTTTGCCAAAATTGATTTCTTCGA
GTGGCACCAAGATTGTAGTAATTTTCTCGACTCTGAAGTCCATATACATG
CAGTGTAGTAATACCGTTCGCCCTCCACTTGACCCAAAATATACAAAACC
AACACGCCTCCTTGAAACCCCCAACAAACAATGATTTATGGAAATTGTTT
TGTGCCCACTTTCACTTCATGGCTGTTCCAGAGTTAGCAAGAGCAGTTCA
ATAATCCAAAGATCCCGCCTCTCTGGTGAAACGTTTGTCTCGACGACGTA
TTCCGATGGTCCAAAGTTGCGGGACGCGAGTCCCTTGTGTTTCGAGAATA
TCGAGCGTGATCACAGTGTTGGTGTAGTATTTCTAGAGGTGATGGTTTAG
ACGAGGTATGAAGCACTGTAAGTAGTAGGGTTGCTCCAATAAGCGCACAT
ATTTCTTCTGGGCTCGCCGATCCCCACTCAGCTACATTATCAATAGCAGA
GGCGTGTCATGATGGTTTGCGTAGGCAAGATCAGTCTTAGACCCTTATGG
CACTGGAGCCCGCAAAATAACCAAAAATGAACCTGGCAGTCTCCCGGCGA
AACCCCTACGAGAAGGTGGGAGGATGGCTTCCGACCTCGTAGGGCCGGAG
TATGGTAACCGATTGTACACGAAAAACATAGGGTCGGGTCAATCCTGTAT
GTTTGTTGACCCACCGGCCACTCAAGAACGTGTCGTCTCCAGTACATTAG
GCAAGTAGTTTTGGGATGACAGGATCCCAACCTAGGGTCCGGGGGGTCGT
GCAAACGTGAATCCCATTTTGTGCTGCTGTCTTTTTGGGAGATGGCACTC
TGTTGGTCTGGTTGTGGGTGCAACAGACGCCTAGTAGTCACCGTTAGGAC
GAGAGCGCTAGCAGCGTATGGTGTGCCTGAGCTTGTCTGTATAGACGGTT
CTAACAACTGGATTTTTTTTTTTGTGGGGTACCACATATATGTCGTTGTC
TTGTTAACACGTCAAAAATGCCAGCGTGGCAAATCAGGGTAACCTGACAT
TCAGTTAACACATACCGCGCGACCGTCTACATGTTGCCCTTCGCTGAAAA
TGTGAATTGGAAGAGTTATTTGGGCCCAAAAGACAACGGCTGCGTATAAA
TACTAATTAGGAAATAACGAGTGTTGAGTACCCTGCTGCCAGCTTATGTG
TCGTTTCATACTCCCCAGGGCTATGTGCGCAATACCGACGTTACCATCGC
TTGTGCTGCCGCGTGTGGAGACCAGCTTGATATTGGTAATACGTATAGTG
GTAGCAAGCTGTCCGCACTTGTCCACCTGGCGATTCATGTCTGTTAATAG
TGGCCAAGTATCACAAGGGCAGTGGTAATACAAGCAATCAGGCACATTGC
TGCTGCTACAGACGGTCGTACCGAAGACATGAAGAGAGAGCCAGAGAGAG
AGAGCTGTACTGCCCTCAACCAACATCGGACAGCCCGACTGGGCGGCATA
GCCCCTTCAAGGAACCGACCGTACCATTCCACCATGTGCGGTTCATTGCA
GTATCCCCATTCTTGATTAACGCAATATCCCTGCTAATTACCCCGGGTGC
GAAACAAAATTGCACCCGGCTATGATAGATCGCACGGTGCCGATGACGAA
GTGCGGTGTGTGATGGTGAGGAAAATACTTTGTAGCCGGGGGGTGCGATG
ATGCACCATGCGAAAAGCAAAGAACTCGTGTTTGATGCTAGGGGTTGGGA
ATGCGGTGTGGACAAAACGTTCCTCAATTGGTGCGTTCGGAGGTTACCTC
GGTACTTAGAGATGGTAGAGCACAAACAACAAATGTTGCCAAGGAGAGTG
GTCTTCACTATATTCCAGGAATACGGAACTCAGTCCCAGCGCTCGCTCGC
AGCACCCTGCTTGTGGTGATGTCGAGCGCTCTTTTGCTGTGTTGCCCAGC
GTGTCATCTTGTATCTTGCGACTGCGGGTCCCAGAAAATACAGAAGACTC
GATCAATTGAGTGAAAGAAGAACAGTGCACATACATGTGGCCGAAGCAGC
GTGTGGACCGAGCAAGCGCTTGCAGGACGCAATTATAGTACTGTAACATG
AACATAAGTATGCCTTGGAAATACGGCGCATTTTCTGGCGTACCTCGCAC
GTAGGCACAACAGTCATACAAAAGGAAGTGTCGAATTGAATGTGTTTTGT
TTGGCTTTGGTTTGTGGTGTGTTTCCTTCTTGGGTAATACCCCAAGACCT
CTGTCGAGAAGTATCTGCAGCATACAATATGCATCATGGATACCTGCAAT
TCTTTTCGTATTTTACACGCAACAAAAGGACAGATACCGCTAATGCAAGA
AAATATATATAGAACTTCCGTTTACTGTCGCTGTTTGGCGCTGATACACC
CATAACTCAGCGTTACAACGGAGAGACCCCCGCCAGAAACCCATCTCGAA
ATCATGAAGATCCCCACCTGTATTCCCCCTCGCACTCTCCCTGTTATCGC
GCTCGGTGCGATAACAACGAGGGGGATGCGAAACACAAAAAACTCGCTCG
TGGAAGTCCGCATCGTGCGATGTCTAAAGGGCGGAGCGATAGCAAAATGT
GTTACGGTACAAGTTCTATCGACCGTAGTGACAGGGAACGAAAACAAAAC
AGATTGCACAAGCGAGTTACTGCGAAAGAGGTCAATCTGGGCAATGTACG
CGTAAGGTATCAGTCTTTTCATTTTTACGAGCTAGCAAGCCCTCCCCCTT
CCCCCTCCACTTTACTACCCCCCCGTCAGACCTGAGGACTGGCAGCTGGG
CAACTCGGGAATAATTAGGTGATCGCCCGGTGAGGGTTACGAATTTTTTG
TAGTCTATTTCGCCATTCGCGAAATCCTTTTGTGGTGCCTTTATATTTGC
AATTTTTTTCATCCCCCGGGTGAATACAGCACCCCGTTCTCCCGAGGACG
CGTAGTCAATTGTCTACCCACTACGGCAAGCAAAACATGAGGACGTTCGT
CCGGATGAATGCGAATAGTTGGAGTATTTGCGACGGAAACCGGAAAAAAA
AGTTTCAGAATGTGCGGGTACATAAGATACAGCTTTGACCTGTGTTTATT
TTTTCGGTCCAGTCGCAAACGGTCCCGGACACATGAAAAATAAACGTGCT
CATGTTGAACCTTCAGGTGAATATTGTTATAATGTCTTCACGAAATGCTT
GAATTGTGCGTGTTAGCCTATCGGGTGACTTTTTTCTTTCAACCCTTGGT
GGTGTGATGGGACTATCGCAGTCATGGCTGCGCCCGTGCAGGTCTCGTTT
TGTCCTTGACGTACGGACAACGGCTTGCTGCGCCCTCTCTCCCGCTCCCC
CCCCTCCCCCAAAAGAAAGTATAATGTCCGTTAACATTCGTATCTTCTAT
GTTAAAAAGTTACTCGAGTACGGGTTCGAGAACTGTTTCGGGAACGACCA
CCCACAACGTGCCGTGATGAATATTTAATATGGGGGCGATTTACATCCTC
AATAAAGGTGCGACATGAATAAATTAGTCACTTGTCAAGTGAAGAGACCC
AGGTTGGCCACACACACACACAGTTTACAATTATTTATGTACTATATACT
GTAATAATGTTGAAATATGGCCAAGTTGGTGCCCTTCCTCGAAGGTCATA
CCTATCCAACCTATCGCGCTAATCTTTTCATCCTGTCCTCTTTCCCCTGA
CCTACCCTATTCCTCATCAAACCACATATCGTCACCTCACCAGAACGACG
CTTGCCCAGCCCCCAGGGCTCGGCCCGTTCTGAACTACTTTGCGATTCCA
TGGTCGGAGGGGTTGCTAGGCCGGCGAGCAGACACCGCACCAGCCGTGAC
GAAGCTGCGGATACGCCGGTCGCGCCCATGTCGTCTTGGTCCCTCAATCC
GGTACCAAGGGAGGACGACGCGGCTGGGGCAGGAGCAGGGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1491:15087..21780-

>mRNA_H-paniculata_contig1491.2926.1 ID=mRNA_H-paniculata_contig1491.2926.1|Name=mRNA_H-paniculata_contig1491.2926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig1491:15087..21780- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGGGATATCGGCAAAACAACAGGCAACGACAGAGTCGTGAAAAAGCA
GAGAATGGAAAGGCGGCGGACATCGACAGGGTTGAAAGTTGAGGGATATC
GGCAAAACAACAGGCAACGACAGAGTCGTGAAAAAGCAGAGAATGGAAAG
GCGGCGGACATCGACAGGGTTGAAAGAACGACGCTTGCCCAGCCCCCAGG
GCTCGGCCCGTTCTGAACTACTTTGCGATTCCATGGTCGGAGGGGTTGCT
AGGCCGGCGAGCAGACACCGCACCAGCCGTGACGAAGCTGCGGATACGCC
GGTCGCGCCCATGTCGTCTTGGTCCCTCAATCCGGTACCAAGGGAGGACG
ACGCGGCTGGGGCAGGAGCAGGGGCGAACGACGCTTGCCCAGCCCCCAGG
GCTCGGCCCGTTCTGAACTACTTTGCGATTCCATGGTCGGAGGGGTTGCT
AGGCCGGCGAGCAGACACCGCACCAGCCGTGACGAAGCTGCGGATACGCC
GGTCGCGCCCATGTCGTCTTGGTCCCTCAATCCGGTACCAAGGGAGGACG
ACGCGGCTGGGGCAGGAGCAGGGGCG
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