mRNA_H-paniculata_contig149.2917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: A0A6H5JUA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA3_9PHAE) HSP 1 Score: 298 bits (763), Expect = 1.320e-84 Identity = 171/349 (49.00%), Postives = 225/349 (64.47%), Query Frame = 3 Query: 93 GTYSLGRKDGSVAFADDRSVSRRHAEVRVGLVPGGDSRKQPIGIKDVGSKFKTFVNDIETGEVNKEISLKEGDVVKVGHTRSL-RVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDA-DCTHLICPDTASIVTEKLVLALAEARPAIHVGWLKALIADAAAHPIRPVPDTSRFPATIKRGG--ATVVVREDMARRSHLGEIFFVLLHKDEAFERIAEGTGALLCRAYTLSDELFLLQDWETLVAGRTAFHVQPLHTDTNVSSPNVAAVIDARGKRLTKLGMEATTKSQLAEAVVYMQAMMSLKEAEAASQNG---------GEMMGLSQAFASQQVSQHTPRT 1100 G ++LGRK SV+F +DRSVSR+HAE+RVG VPG D QPI +KDVGSK KT VN ETGE +KEISLKEGD VKVG T S+ RV F++L C T+L+ E +ELK L+ + GG +++KWDA CTHL+ S VTEKLVLAL RP +HVGWLK L+A A P+RPVP+T+ F + R VR RR+HL FF +LHKDE E I E G LCRAY +SD+ F QDW+ AGR + H P + ++S+ AV+ +RG+ L +GM AT K+QL EAVVY+Q++++++EA AS + E G SQ+ A+ Q+++ P T Sbjct: 4 GIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTDQPIWVKDVGSKLKTCVNGSETGEAHKEISLKEGDEVKVGTTNSIMRVRFQALRFCATQLTAEEKAELKALSKRCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLVAGGTAKPLRPVPETAAFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFAILHKDELVETIVEAAGGALCRAYAMSDDDFAGQDWQKWSAGRQS-HFVPAGPEVSLSA-KAKAVLASRGEVLEDVGMAATDKTQLTEAVVYLQSLVNVREAMRASSSSIAPMAMNTSSEAWGPSQSLAASQLAKGRPAT 350
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: D8LKB3_ECTSI (Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB3_ECTSI) HSP 1 Score: 295 bits (755), Expect = 6.880e-83 Identity = 172/342 (50.29%), Postives = 217/342 (63.45%), Query Frame = 3 Query: 93 GTYSLGRKDGSVAFADDRSVSRRHAEVRVGLVPGGDSRKQPIGIKDVGSKFKTFVNDIETGEVNKEISLKEGDVVKVGHTRSL-RVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDA-DCTHLICPDTASIVTEKLVLALAEARPAIHVGWLKALIADAAAHPIRPVPDTSRFPATIKRGG--ATVVVREDMARRSHLGEIFFVLLHKDEAFERIAEGTGALLCRAYTLSDELFLLQDWETLVAGRTAFHVQPLHTDTNVS-SPNVAAVIDARGKRLTKLGMEATTKSQLAEAVVYMQAMMSLKEAEAASQNG---------GEMMGLSQAFASQQ 1076 G ++LGRK SV+F +DRSVSR+HAE+RVG VPG D +QPI +KDVGSK KT VN ETGE +KEISLKEGD VKVG T S+ RV F++L C T+L+ E +ELK L+ K GG +++KWDA CTHL+ S VTEKLVLAL RP +HVGWLK L A A P+RPVP+T F + R VR RR+HL FF +LHKDE E I E G LCRAY +SD+ F QDW+ AGR + VQ VS S V+ +RG+ L +GMEAT K+QL EAVVY+Q++++++EA AS + E G SQ+ A+ Q Sbjct: 4 GIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGETHKEISLKEGDEVKVGTTNSIMRVRFQALRFCATQLTAEEKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAAGGTAKPLRPVPETEAFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFAILHKDELVETIVEAAGGALCRAYAMSDDDFAGQDWQEWSAGRQSHFVQ---AGPEVSLSAKAKGVLASRGEVLEDVGMEATDKTQLTEAVVYLQSLVNVREAMRASSSSIAPMAVNTSSEAWGPSQSLAASQ 342
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: UPI001567DE97 (nibrin n=2 Tax=Maniola TaxID=111919 RepID=UPI001567DE97) HSP 1 Score: 82.0 bits (201), Expect = 4.070e-12 Identity = 59/167 (35.33%), Postives = 87/167 (52.10%), Query Frame = 3 Query: 129 AFADDRSVSRRHAEVRVGLVPGGDSRKQPIGIKDVGSKFKTFVNDIETGEVNKEISLKEGDVVKVGHTRSL-RVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDADCTHLICPDTASIVTEKLVLALAEARPAIHVG-WLKALIADAAAHPIRPVPDTSRF 623 A +D+S+SR+HA + + + +KD+GSK+ T+VN+ E E N I L DVVK G + +V + C + L E LKVL AK+GG++ +WD C +L P A +T K+VLAL ++ + V W K L AA P+P+ S F Sbjct: 35 AIPEDQSISRKHATLFIS--------DNTLYVKDLGSKYGTYVNNSEKIEENVMIKLNSTDVVKFGKISCVWKVQEINFVTCTSTLKGENLQNLKVLLAKLGGSLKNEWDDTCAYLTMP--AITLTIKVVLALVQSSNIVTVKYWSKCL---EAATDNNPLPNASDF 188
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: A0A8J9YAN2_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9YAN2_9NEOP) HSP 1 Score: 80.1 bits (196), Expect = 1.600e-11 Identity = 75/293 (25.60%), Postives = 136/293 (46.42%), Query Frame = 3 Query: 81 PAVAGTYSLGRKDGSVAFADDRSVSRRHAEVRVGLVPGGDSRKQPIGIKDVGSKFKTFVNDIETGEVNKEISLKEGDVVKVGHTRSL-RVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDADCTHLICPDTASIVTEKLVLALAEARPAIHVGWLKALIADAAAHPIRPVPDTSRF-----PATIKRGGATVVVREDMARRSHLGEIFFVLLHKDEAFER--IAEGTGALLCRAYTLSDELFLLQDWETLVAGRTAFHVQPLHTDTNVSSPNVAAVID---ARGKRL 926 P G Y G + A+D S+SR+HA + V GD + +KD+GSK+ T++N+ + E NK I L + DVVK G + RVS+ + C + L E LK + +GGT+ +WD C +L P A +T K+VLAL + + + + K + +A ++ + P+P+ + F +T+ R + + + + ++ F + E ++ + ALL L+ +D + +++ ++ +T + +ID RGKR+ Sbjct: 21 PVTIGRYVDG-PNCDFTIAEDASISRKHATL---TVSEGD-----LLLKDLGSKYGTYINNSDKVEHNKMIKLNKDDVVKFGKMSCIWRVSYINFITCTSTLKGENLQNLKKVLDILGGTLKNEWDDTCMYLTMP--AITLTIKVVLALVQKSHIVTIDYWKKCV-EAISNNL-PLPNPNNFIPQILESTLNRENVSFIPKNERCNLFAGKKVIFFSRRQLEMYKTALMKSSATALLLSESKLTKAALCEEDVIVI-----QYNLSSINQETQSQREQINEIIDYLKCRGKRV 295
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: A0A0M0JXZ0_9EUKA (Nibrin (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXZ0_9EUKA) HSP 1 Score: 74.3 bits (181), Expect = 7.170e-11 Identity = 64/202 (31.68%), Postives = 93/202 (46.04%), Query Frame = 3 Query: 96 TYSLGRKDGSVAFADDRSVSRRHAEVRVGLVPGGDSRKQPIGIKDVGSKFKTFVND--IETGEVNKEISLKE----------------------GDVVKVGHTRSLRVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDADCTHLICPDTASIVTEKLVLALAEARPAIHVGWLK-ALIADAAAHPIRPVPDTSRFP 626 +Y +GRK+G++ A+D+S+SRRHAE+ V D R + IKD+ SKF TF+N + E SL E G +KVG T S V L +C + +S +A + K ++G AK+W D THL+ P T K + AL P ++ WL A + A + P+ V D P Sbjct: 32 SYLIGRKEGAIVLANDKSISRRHAELSV-----TDGR---LFIKDLDSKFGTFINTQRLWNTEPTDAASLAESQPLLAEEPYGHPGGRRYAVPHGAKLKVG-TTSFLVEHVPLVVCASGVSGDAKATHKAACERLGAAQAKEWREDVTHLVTPMMQW--TPKFLYALGSLVPVVNPLWLHDASMRTAISDPLPDVNDAKYAP 222
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: UPI001E27446A (nibrin n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E27446A) HSP 1 Score: 75.1 bits (183), Expect = 5.610e-10 Identity = 60/201 (29.85%), Postives = 101/201 (50.25%), Query Frame = 3 Query: 30 MWVLEILKLDGGVETTLPAVAGTY--SLGRKDGSVAFADDRSVSRRHAEVRVGLVPGGDSRKQPIGIKDVGSKFKTFVNDIETGEVNKEISLKEGDVVKVGHTRSL-RVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDADCTHLICPDTASIVTEKLVLALAEARPAIHVGWLKALIADAAAHPIRPVPDTSRF 623 MW L + D + LP + T SL ++ + A ++D S+SR+HA + + + +KD+GSK+ TFVN+ E + I+L D++K G S+ +V +L C + L E LK + AK+GG + +WD C +L P A +T K+VLAL + + + + I A + +P+P+ + F Sbjct: 1 MWYLTS-ENDKRIVFVLPGKSVTLGRSLDGQNCNFAISEDPSISRKHATLSIS--------DGVLILKDLGSKYGTFVNNSVKVEHDTMITLNCNDIIKFGKMNSIWKVQQINLTTCTSTLKGENLQNLKNILAKLGGVVKSEWDDTCEYLTMP--AITLTIKVVLALVQNSHIVTIDYWNKCIE--AVNNNQPLPNPNNF 188
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: A0A6J1NQ64_BICAN (nibrin n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1NQ64_BICAN) HSP 1 Score: 74.3 bits (181), Expect = 9.850e-10 Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 3 Query: 129 AFADDRSVSRRHAEVRVGLVPGGDSRKQPIGIKDVGSKFKTFVNDIETGEVNKEISLKEGDVVKVGHTRSL-RVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDADCTHLICPDTASIVTEKLVLALAEARPAIHVG-WLKAL 569 A D+S+SR+HA + + ++ + +KD+GSK+ T+VN+ E E N L DVVK G S+ +V + C + L E LK+L +GGT+ +WD C +L P A +T K+VLAL + + V W K L Sbjct: 35 AIPSDQSISRKHAILLIS--------ERALYLKDLGSKYGTYVNNSEKIEENVLTKLNSTDVVKFGKMGSIWKVQEINFVTCTSTLKGENLQNLKILITSLGGTLKNEWDDTCAYLTMP--AITLTIKVVLALVQNSHIVAVKYWNKCL 173
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: UPI0002C3715B (nijmegen breakage syndrome 1 protein isoform X1 n=4 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C3715B) HSP 1 Score: 72.0 bits (175), Expect = 4.180e-9 Identity = 67/233 (28.76%), Postives = 109/233 (46.78%), Query Frame = 3 Query: 63 GVETTLPAVAGTYSLGRKDGSVAFADDRSVSRRHAEVRVGLVPGGDSRK-------QPIGIKDVGSKFKTFVNDIETGEV------NKEISLKEGDVVKVGH-TRSLRVSFRSLHL--CGTRLSREASSELKVLAAKVGGTIAKKWDADCTHLICPDTASIVTEKLVLALAEARPAIHVGWLKALIADAAAHPIRPVPDTSRFPATIKRGGATVVVREDMARRSHLGEIFFVL 713 G +T GTY +GRK V A+D+ VSR HAE+ V + R+ + I+D SK+ T++N T NKE SL++GD+V G T R SF L+L C S + + L+ + +G I W +CTH++ D + E L+ A+ + +P + W++ L A + + P + F T+ G +V + + +R + L F+L Sbjct: 13 GEDTYYIFARGTYKVGRKGCDVNIAEDKGVSRVHAEIVVDSMVSALPRQTKSSVLSSKVRIRDC-SKYGTYINKNLTSMEKIHDLPNKETSLRDGDLVSFGTGTAVFRFSFVPLNLFACCPEKS-QVNHPLQEKISSIGACITYHWSQECTHVLV-DHVMPMKEDLLDAIMKKKPFVVGTWVEFL---AEKNILTEFPCYTPFSPTMTVDGTSVKLADPRSRENCLAGYAFLL 239
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: A0A139AMD5_GONPJ (NIBRIN_BRCT_II domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AMD5_GONPJ) HSP 1 Score: 71.2 bits (173), Expect = 4.830e-9 Identity = 53/169 (31.36%), Postives = 82/169 (48.52%), Query Frame = 3 Query: 102 SLGRKDGSVAFADDRSVSRRHAEVRVGLVPGG---DSRKQPIGIKDVGSKFK-TFVNDIETGEVNKEISLKEGDVVKVGHTRS-------LRVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDADCTHLICPDTASIVTEKLVLALAEARPAIHVGWLKALIA 575 S+GRKDG++ + ++S+SR HA VG V G D + P SKF TFVN + + E + + +GD + G+T + R+ + LC + + + E+ LAA + I W CTHL+ VT K+V LA+ R + W++AL A Sbjct: 25 SIGRKDGTLTYPQEKSISRSHAAFVVGNVVEGMVTDLNRFPSVTLTDNSKFLYTFVNGVPSTEATRIRQVADGDQLSFGNTIADGLPLVRFRLKRSPVVLCLSGVPKNVKKEMTGLAAVLDLKIEPDWTDACTHLLMHSLK--VTYKVVACLADCRHIVSDNWVRALSA 191
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Match: A0A8J2NQF9_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2NQF9_9HEXA) HSP 1 Score: 71.2 bits (173), Expect = 1.310e-8 Identity = 54/202 (26.73%), Postives = 89/202 (44.06%), Query Frame = 3 Query: 36 VLEILKLDGGVETTLPAVAGTYSLGRKDGSVAFADDRSVSRRHAEVRVGLVPGG---DSRKQPIGIKDVGSKFKTFVN-----DIETGEVN--KEISLKEGDVVKVGHT-RSLRVSFRSLHLCGTRLSREASSELKVLAAKVGGTIAKKWDADCTHLICPDTASIVTEKLVLALAEARPAIHVGWLKALIADAAAHPIRPVP 608 +L+++ ET V Y++GR+ G +AF +D+S+SR HAE+ V S + + D+GSKF +F N E E+N + +SL G+ V+ G RV + L + LS E E+K + K+GG W ++ + +T K V L + + K L+ ++ P P Sbjct: 1 MLKLISKKNPAETHWFLVGKKYTVGRRAGDLAFPEDQSISRNHAEIEVDFPRANVEDPSLLPTLNVMDIGSKFGSFFNIEGQDSAELVEMNMREPVSLVHGNTVRFGRQWNEFRVEYTPLVAVASSLSNEDKKEVKEIVWKLGGHFESNWSTKANFVVMSEVT--LTIKAVCGLLAGNYIVTPQYFKDLLRSIESNQPAPEP 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig149.2917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig149.2917.1 >prot_H-paniculata_contig149.2917.1 ID=prot_H-paniculata_contig149.2917.1|Name=mRNA_H-paniculata_contig149.2917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=824bp MWVLEILKLDGGVETTLPAVAGTYSLGRKDGSVAFADDRSVSRRHAEVRVback to top mRNA from alignment at H-paniculata_contig149:24404..44703+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig149.2917.1 ID=mRNA_H-paniculata_contig149.2917.1|Name=mRNA_H-paniculata_contig149.2917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=20300bp|location=Sequence derived from alignment at H-paniculata_contig149:24404..44703+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig149:24404..44703+ >mRNA_H-paniculata_contig149.2917.1 ID=mRNA_H-paniculata_contig149.2917.1|Name=mRNA_H-paniculata_contig149.2917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4944bp|location=Sequence derived from alignment at H-paniculata_contig149:24404..44703+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |