mRNA_H-paniculata_contig1489.2913.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1489.2913.1
Unique NamemRNA_H-paniculata_contig1489.2913.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1489.2913.1 vs. uniprot
Match: D7FSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.090e-19
Identity = 58/141 (41.13%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:   73 MADDELYGDLDTSRTALMLKTVEVELQQSEAARQSLEQRLTVTQKRVCHVLQFTTQCFTVRTTITVACVQTCSDTRRGNPWCPRMIDEKLLSEENEVLAKNISCLYNTARAEIARKDRWIERLRKELQEKEANARQSSSRR 495
            MA+++LYGDLDTS  AL +K +E EL  SE+ R+ LE+RL    ++                                         EK+L  ENE LAKNISCL+NTA+AEIARK+ WIERLR+ELQ  E   +Q    R
Sbjct:    1 MAEEDLYGDLDTSVDALKIKGLEAELSTSESLRRGLEERLASALRK-----------------------------------------EKVLRAENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAEGKLKQKDGAR 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1489.2913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSW1_ECTSI7.090e-1941.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1489contigH-paniculata_contig1489:7571..10509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006580.1
Exons3
Model size773
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1489.2913.1prot_H-paniculata_contig1489.2913.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1489 7643..10234 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.5632007-UTR-H-paniculata_contig1489:7570..76421622929191.5632007-UTR-H-paniculata_contig1489:7570..7642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1489 7571..7642 +
1691480764.2013552-UTR-H-paniculata_contig1489:7570..76421691480764.2013552-UTR-H-paniculata_contig1489:7570..7642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1489 7571..7642 +
1622929191.6768317-UTR-H-paniculata_contig1489:10234..105091622929191.6768317-UTR-H-paniculata_contig1489:10234..10509Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1489 10235..10509 +
1691480764.2378469-UTR-H-paniculata_contig1489:10234..105091691480764.2378469-UTR-H-paniculata_contig1489:10234..10509Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1489 10235..10509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.5780752-CDS-H-paniculata_contig1489:7642..77051622929191.5780752-CDS-H-paniculata_contig1489:7642..7705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1489 7643..7705 +
1691480764.2134926-CDS-H-paniculata_contig1489:7642..77051691480764.2134926-CDS-H-paniculata_contig1489:7642..7705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1489 7643..7705 +
1622929191.6300144-CDS-H-paniculata_contig1489:7934..81321622929191.6300144-CDS-H-paniculata_contig1489:7934..8132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1489 7935..8132 +
1691480764.22266-CDS-H-paniculata_contig1489:7934..81321691480764.22266-CDS-H-paniculata_contig1489:7934..8132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1489 7935..8132 +
1622929191.6579912-CDS-H-paniculata_contig1489:10069..102341622929191.6579912-CDS-H-paniculata_contig1489:10069..10234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1489 10070..10234 +
1691480764.230345-CDS-H-paniculata_contig1489:10069..102341691480764.230345-CDS-H-paniculata_contig1489:10069..10234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1489 10070..10234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1489.2913.1

>prot_H-paniculata_contig1489.2913.1 ID=prot_H-paniculata_contig1489.2913.1|Name=mRNA_H-paniculata_contig1489.2913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MADDELYGDLDTSRTALMLKTVEVELQQSEAARQSLEQRLTVTQKRVCHV
LQFTTQCFTVRTTITVACVQTCSDTRRGNPWCPRMIDEKLLSEENEVLAK
NISCLYNTARAEIARKDRWIERLRKELQEKEANARQSSSRR*
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mRNA from alignment at H-paniculata_contig1489:7571..10509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1489.2913.1 ID=mRNA_H-paniculata_contig1489.2913.1|Name=mRNA_H-paniculata_contig1489.2913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2939bp|location=Sequence derived from alignment at H-paniculata_contig1489:7571..10509+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTCATTCTCCAGATACAAATCGCAACAACAACCGTAACAACAATATA
AAGAACGGAAGCCAACAATATCATGGCGGACGATGAACTGTATGGAGACT
TAGACACCTCCAGGACCGCCCTTATGCTGAAGACTGTGAGTACACCCACT
CGAATGGCAATATACACACTCATGGACGTAGAATGGTAAATTTGAAGCGA
TCGAGAGACATTCGATCTGTACGGGATATGTCGTTACAGCGTCACGAGGC
GAGGACCGTAACCTTTTGGCTCGCTACCTATGCCGCAAGATGTGCTACGC
ACCCACCACCAGTATTATTGCTACTGCTGCCATACTTTGCCTGTTCCGCT
GCTTGCTTCTCTAGGTGGAGGTCGAACTGCAACAATCGGAAGCTGCGAGA
CAAAGTCTGGAGCAGAGGCTGACAGTTACACAGAAACGGGTGTGTCATGT
TCTTCAATTTACAACACAATGTTTCACTGTCCGTACTACAATAACAGTTG
CCTGTGTGCAGACATGTTCCGACACACGCAGGGGCAATCCATGGTGCCCG
CGCATGATTGATGTAAGCTGTAAAGTCTCCTCTCTTTCTATTTATCTGTT
CGGGAAGAAACTGCAGATAGTAGGTACTGGGACTTGCCTGACTGTGTACT
CAGCATTCTCGAGTGTCACTCGTTAGGGATACCCGTGCTGTACTGTATGT
ACTGCACCGCTGTTGACAACCTGTACTGTAGTCTAAGTACCTACATTTCT
TGCCTGTCAACCATGCTTGATGAAGTGCGACCAGGTATCGCTCGCTTCCG
ATGTTGTCCGGGCTCACAGAAGCACGAAAGGAACAAAGCCAACCGAGAGT
AACTCGTATACGTGACGATGGAGGGAGCGCTTATCTGAATGTAGGGTTGA
GTGTTTAATGTTGGTCATATCGAACGACTCGGCCCGATCGGGTAAATATT
GCCCCTTTTAATCCTCCCATCAACGAGCAATTTCCCCATGACGGTCCGAA
GAACCGAAGCATCCAGCCATCAACTTTTGGTCTCCACGATTTCAGTGAAC
GGCATTTTCGCGAGCACTCCGCATGGAACACGTCGAGGATGCTTTCAGCT
CAGTCGGTGTGTTTGCCCCCCCCCCCCCACATGAAGCGGCACAGCTGGTG
CTGTGTTTGATAGTGCTTTAGTGCGTATCATGTACGTCTTACGAGCTACG
GAAGTACTCGCAAACGTGGGCACATTGGTCTAGGGTCGTTCTAAACGTTG
TTTTATTCCTCTTTCCCCCCCTTTTTTTTGTTTCTTGATCGTGTTCCCTC
TTTTTTTCTTTTTCACACGGAGAAGAGAAATGAACATGAAGATCTATTTT
TTCTCGTGTTCGTTTCTCTTTCCTTGTTTTTCTCGCCGGTACCGCCGGCG
CTGCACATACACACGGCGCTCGGAACCGGTGTGCAGCGTGATAGCTTCAT
GAGACTTTCACATGACGTGGGATATCCCCATGACTACGCTGACTGTAGCT
CACTCCTCAACCGTCGTGTACACATTGGATCGTTACGTCGACGGCTCTAT
GTGTAACGTTGGTGAAAGAAGAGGTTGTCGAGCAGATCTCTCCACTGCCT
GTATTGACGCGCTCGAGCTTCGTCAGCAGGACTCTGGCTTGTGGGACATT
TCCATGACTATACGAGTCTATCACGATAGTGCTGGCCGCAGTTCACTAGC
TGTTTTTGTGTCAGTTCTTGTCACTAGTTTGTCTGCACGCCCTGGGTAGA
AGCTAAATGGCTGCACTTGGCGTTGAAAATGAAACGCTCAGTTTTCTCTT
TTCATGACCGAAAAAAGAAGAAAGAGTCTAACGTTTAGAGTAGAACGGCC
CTCTGCGATGGGGTACTATTAGTACATTGCATGTAGACTTAGAAGGTCTA
GCGCGCGCATGTACGGTGGTGCTTTTTTATTCGTGAAGCGATTGCACAGT
ACCAGAGAGATAGACCTTTCCATGACGCCAGGGTCACCTGTTCTCTGTGC
CCGCGGCCGATAAAACCTGATAGTGAAAGAGATGTTCGATGAAAGTAAAC
TTGGTGCTGCTTCAGCTACAGTACTTTTCTTTGGCCCTGCTGCGTCTATT
GTTGATCCAAGAAATAGCTAAGAACGATAATATTTTACAACATGCTATGG
TCAACGTAAGACGGCGCCGAATCTACACACTCCTGGAACTCCCAGGGGCA
TAGGTTCGATATCTCTCACAACTTTCTCTGGCTTCATGAACGGACCCTCA
GATAAGATGAAGCCGCGCTAAGGAGAGTTGGGAGAGCATGATTGTTGTTC
TATGTTTGTCTCTGTCCTTGGAAGTACGATTTTACTCCGTATGCCAACGC
AACACAGTGCAAATCTGGGCATGGCGTCAGGACGTGACCAGCAAATCATA
GTGATGCAGCAAAACCCATCGATAAGTTAACCAACGTCGCCTTCCAGTAG
TTTTACAAAAGCTAGCACCGCTCCTTCTTGTTCATCGTTTGTTCTGCAGG
AAAAGTTGCTGTCTGAAGAAAATGAGGTGCTAGCGAAGAACATATCTTGC
CTTTACAACACCGCTCGGGCAGAGATCGCACGCAAAGACAGGTGGATAGA
GCGACTTCGAAAAGAGCTGCAAGAAAAGGAGGCAAACGCACGGCAGAGTA
GTAGCCGCCGATGACCACCCATCCCCGTGTTCGGCAGGGTCTGCTTATTG
CGCAGAATACCTGCCACCGTAATTTGTTTTTCAAGATAGTAAATTATCAA
CGCCCGTGTCCGGTTATTTCGGTGCTTCTGCAGTGTATGTGCTACGTGAA
GTGTATCGTGGTGATACATGAAGTGGACGTCGTGTCGACGATGATTCATG
ATGTGACGATATTTTTTGTCCCTGCTTGGCAGCAAAGGTCGAAATATATG
AACAAATTCCAATCCCAATCATTCCAGACGTTATCTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1489:7571..10509+

>mRNA_H-paniculata_contig1489.2913.1 ID=mRNA_H-paniculata_contig1489.2913.1|Name=mRNA_H-paniculata_contig1489.2913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig1489:7571..10509+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGACGATGAACTGTATGGAGACTTAGACACCTCCAGGACCGCCCT
TATGCTGAAGACTATGGCGGACGATGAACTGTATGGAGACTTAGACACCT
CCAGGACCGCCCTTATGCTGAAGACTGTGGAGGTCGAACTGCAACAATCG
GAAGCTGCGAGACAAAGTCTGGAGCAGAGGCTGACAGTTACACAGAAACG
GGTGTGTCATGTTCTTCAATTTACAACACAATGTTTCACTGTCCGTACTA
CAATAACAGTTGCCTGTGTGCAGACATGTTCCGACACACGCAGGGGCAAT
CCATGGTGCCCGCGCATGATTGATGTGGAGGTCGAACTGCAACAATCGGA
AGCTGCGAGACAAAGTCTGGAGCAGAGGCTGACAGTTACACAGAAACGGG
TGTGTCATGTTCTTCAATTTACAACACAATGTTTCACTGTCCGTACTACA
ATAACAGTTGCCTGTGTGCAGACATGTTCCGACACACGCAGGGGCAATCC
ATGGTGCCCGCGCATGATTGATGAAAAGTTGCTGTCTGAAGAAAATGAGG
TGCTAGCGAAGAACATATCTTGCCTTTACAACACCGCTCGGGCAGAGATC
GCACGCAAAGACAGGTGGATAGAGCGACTTCGAAAAGAGCTGCAAGAAAA
GGAGGCAAACGCACGGCAGAGTAGTAGCCGCCGATGAGAAAAGTTGCTGT
CTGAAGAAAATGAGGTGCTAGCGAAGAACATATCTTGCCTTTACAACACC
GCTCGGGCAGAGATCGCACGCAAAGACAGGTGGATAGAGCGACTTCGAAA
AGAGCTGCAAGAAAAGGAGGCAAACGCACGGCAGAGTAGTAGCCGCCGAT
GA
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