mRNA_H-paniculata_contig14888.2911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14888.2911.1
Unique NamemRNA_H-paniculata_contig14888.2911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.060e-39
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 1
Query:   61 VYVYETSFRARVEPVHWDPTRGDVIDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQVR 396
            VY+YE+ F AR +  +WDP   D +DLHGYS AVAKAAIRSGLS++L+R+L A+ DP+VV+ FT ITG G+HS++ FEPVLRP AQDMLL+EF+PPL THF   N GRLQVR
Sbjct:  976 VYIYESIF-ARQQAENWDPADKDAVDLHGYSQAVAKAAIRSGLSRVLQRYLVAEKDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVR 1086          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: A0A835YST6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.750e-27
Identity = 60/128 (46.88%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   19 VVPTAEPTNQNTQAVYVYETSFRARVEPVHW--DPTRGDVIDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQVR 396
            +V   E   +  + VYV++ +        +   DP+ G  +DLHGYS AVAKAA+RSGL  L R++ +   D +VV DFT ITG+G+HSK  F+P +RP  Q MLL+E DPPL   F  GNAGRL V+
Sbjct:  971 IVELLEECGEFDKTVYVFDQAVAVGPGAANGSLDPSTGKTVDLHGYSLAVAKAAVRSGLQHLRRKYQSTGQDVSVVNDFTIITGIGRHSKLAFKPTVRPTVQAMLLEEQDPPLRAQFTPGNAGRLVVQ 1098          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: W7U458_9STRA (Pentatricopeptide repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U458_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.660e-23
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   58 AVYVYETSFRARVEPVHWDPTR---GDVIDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQVR 396
            AV+V+E+S    +    ++      G ++DLHGYS  VA+AA+R+GL +L + +        V+KDF FITGVG++S+ PFEPVLRPA Q ML ++FDPPL     + N GRL VR
Sbjct: 1029 AVHVFESSVVGYIRSEDYEMESDGPGMLVDLHGYSQPVARAAVRAGLKRLCQMYEQTGKREGVIKDFVFITGVGRNSEMPFEPVLRPAMQRMLNEDFDPPLPCETAENNPGRLIVR 1144          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: D7FIK6_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK6_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-19
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  217 AQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQVR 396
            A+ DP+VV+ FT ITG G+HS++ FEPVLRP AQDMLL+EF+PPL THF   N GRLQVR
Sbjct:    8 AEKDPSVVEQFTIITGRGRHSRQAFEPVLRPVAQDMLLEEFEPPLPTHFDPTNDGRLQVR 67          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: I2CPG0_NANGC (Putative udp-glucosyltransferase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPG0_NANGC)

HSP 1 Score: 79.0 bits (193), Expect = 5.760e-15
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  133 IDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQV 393
            +DLHG SA VA AA+R  L ++   +      PA VKD   I+GVGK S  PF P LRPA QDML++++ PP+ +    GNAGR+ V
Sbjct:  186 LDLHGMSAPVAAAAVRYALKRIREEWWRC--GPAAVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVV 270          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: A0A4D9CXQ2_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXQ2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.740e-14
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  133 IDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQV 393
            +DLHG SA VA AA+R  L ++   +      PA VKD   I+GVGK S  PF P LRPA QDML++++ PP+ +    GNAGR+ V
Sbjct: 1050 LDLHGMSAPVAAAAVRYALKRIREEWWRC--GPAAVKDLVLISGVGKGSLVPFRPTLRPAVQDMLVEQYYPPIDSTTQPGNAGRVVV 1134          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: A0A7S3XTI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTI1_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 1.470e-11
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   31 AEPTNQNTQAVYVYETSFRARVEPVHWDPTRGDVIDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQV 393
            AE   ++   + ++     A +E  +   +   VIDLHGY   VA  AIR  +S++L     AQ+    VK    ITG GKHS    +PVLRP  Q+ML++EF PP+ T    GN+GR+ +
Sbjct:  393 AETVFKDASDLELFGNEILASIENSYSQDSPAVVIDLHGYVLPVAHMAIRRAMSEVLG---VAQHCQQSVKPIEIITGSGKHSINN-KPVLRPEIQNMLVEEFFPPIYTSTKPGNSGRIII 509          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: A0A7S2RYR1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYR1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.770e-10
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  130 VIDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQV 393
            +IDLHG+SA +A+ AIR+ L  LL +  T    P +      ITG G++S+   +PVLR   Q ML++EF PP+++    GN GRL++
Sbjct:  899 LIDLHGFSAPLAQTAIRATLFDLLGQ--TTITHPTLFPRVVIITGKGRNSRH--QPVLREVVQQMLVEEFYPPISSTTVPGNEGRLEI 982          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: A0A1Z5K940_FISSO (Smr domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K940_FISSO)

HSP 1 Score: 66.2 bits (160), Expect = 4.810e-10
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  130 VIDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQV 393
            V+DLHG +  +A +A+R    + L    T  ND   V D   +TG G++S     P+LRPA Q ML++EF PP+ T    GN G L++
Sbjct: 1054 VLDLHGMNLPMAHSAVRIAFQQGLLTD-TGPNDDESVNDLVIVTGRGRNSALKMRPILRPAVQRMLVEEFYPPIGTTSIPGNMGALRI 1140          
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Match: A0A1Z5JGL3_FISSO (Smr domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGL3_FISSO)

HSP 1 Score: 65.9 bits (159), Expect = 6.560e-10
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  130 VIDLHGYSAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPVLRPAAQDMLLDEFDPPLATHFFDGNAGRLQV 393
            V+DLHG +  +A +A+R    + L   +   ND +V  D   +TG G++S     P+LRPA Q ML++EF PP+ T    GN G L++
Sbjct: 1050 VLDLHGMNLPMAHSAVRIAFQQGLLTDIWPNNDKSV-NDLVIVTGRGRNSALKMRPILRPAVQRMLVEEFYPPIGTTSIPGNMGALRI 1136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14888.2911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KNR8_9PHAE2.060e-3965.18Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YST6_9STRA3.750e-2746.88Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
W7U458_9STRA5.660e-2346.55Pentatricopeptide repeat containing protein n=1 Ta... [more]
D7FIK6_ECTSI1.100e-1968.33Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
I2CPG0_NANGC5.760e-1548.28Putative udp-glucosyltransferase (Fragment) n=1 Ta... [more]
A0A4D9CXQ2_9STRA1.740e-1448.28Smr domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S3XTI1_HETAK1.470e-1138.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RYR1_9STRA4.770e-1042.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5K940_FISSO4.810e-1039.77Smr domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A1Z5JGL3_FISSO6.560e-1038.64Smr domain-containing protein n=1 Tax=Fistulifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14888contigH-paniculata_contig14888:5315..6388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue8e-11
Seed eggNOG ortholog159749.K0RK24
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Smr domain
EggNOG OGs2E0BI@1,2S7SI@2759,2XBQ9@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.3780699-CDS-H-paniculata_contig14888:5314..54901622929191.3780699-CDS-H-paniculata_contig14888:5314..5490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14888 5315..5490 -
1691480764.153863-CDS-H-paniculata_contig14888:5314..54901691480764.153863-CDS-H-paniculata_contig14888:5314..5490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14888 5315..5490 -
1622929191.39813-CDS-H-paniculata_contig14888:6168..63881622929191.39813-CDS-H-paniculata_contig14888:6168..6388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14888 6169..6388 -
1691480764.1652856-CDS-H-paniculata_contig14888:6168..63881691480764.1652856-CDS-H-paniculata_contig14888:6168..6388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14888 6169..6388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14888.2911.1prot_H-paniculata_contig14888.2911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14888 5315..6388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14888.2911.1

>prot_H-paniculata_contig14888.2911.1 ID=prot_H-paniculata_contig14888.2911.1|Name=mRNA_H-paniculata_contig14888.2911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
LLCIYTVVPTAEPTNQNTQAVYVYETSFRARVEPVHWDPTRGDVIDLHGY
SAAVAKAAIRSGLSKLLRRFLTAQNDPAVVKDFTFITGVGKHSKRPFEPV
LRPAAQDMLLDEFDPPLATHFFDGNAGRLQVR
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mRNA from alignment at H-paniculata_contig14888:5315..6388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14888.2911.1 ID=mRNA_H-paniculata_contig14888.2911.1|Name=mRNA_H-paniculata_contig14888.2911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig14888:5315..6388- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATTATGTATTTACACCGTTGTTCCTACTGCCGAACCAACCAACCAAAA TACACAGGCCGTTTACGTGTATGAGACCAGTTTCAGGGCGAGAGTCGAAC CCGTGCACTGGGACCCGACCCGCGGCGATGTGATCGACCTGCACGGTTAT TCGGCCGCTGTGGCCAAGGCAGCTATTCGATCCGGCCTCAGCAAGCTCCT GAGGCGATTTCTCACAGCCCGTAAGTAATGAATCTTGCTGTATTTACGTA TCTGTAAGGTGACATCACCGAGTTGCTTCAGCTGCACTGCCTTTACCTAC TGTCCTGGTTACCCACACCACCCCTGTACCCGCTGCCTTGTGCCATCTCG ATGTTTGATGTTTGTTGTGAGGTGACACTGGAAGTGATATGACCAAAATT TGGCTGTTTTTATACGCGAAATAAGTTTATCTAGAGGATGGAAAGCTTCA GTTAAAAAAATTCCTCCACGAAAACACTTATCTTCGAGACCATAATTTTT CTGTTCCGAAACGACCCTTAATTAACTAACAAGGCTACTCTAGTGGGTAA GGGTGTGTAGTGTATGTGCGGTAATTTCTGTTTTCAAGGACGGGGAAGGG AGGTATTTCGATTAATCTGCCAGGAAGCGAACCGCATCATGCGCATATAA AACAGGTGCGTAGATGTCGTGATTAGAAAGGAATACCGTAACCCCCATGT AGATAGATACGTACGTCTAACTTGCGGCAGGCACCCTTACTGAATGTTTA TAACGTTATAACGTATTTCTTAGCTCTCTCTCTCTCTCTCTGTCTCCTTT TGCCTCTCCCATGTCTCTCCTATGTCTTTCTGTCTCCAATTTCTGCATCT CTCTCTATCCCTCTGTGTTTATATCCCAACAAAAAATGACCGTCACAGAG AACGACCCCGCTGTGGTTAAAGACTTCACGTTCATCACCGGCGTGGGCAA GCACAGCAAGAGGCCTTTTGAGCCCGTCCTCAGGCCGGCCGCCCAAGACA TGCTGCTGGATGAATTCGATCCCCCGCTCGCCACGCACTTTTTTGACGGA AACGCTGGTCGCCTACAGGTACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14888:5315..6388-

>mRNA_H-paniculata_contig14888.2911.1 ID=mRNA_H-paniculata_contig14888.2911.1|Name=mRNA_H-paniculata_contig14888.2911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig14888:5315..6388- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATTATGTATTTACACCGTTGTTCCTACTGCCGAACCAACCAACCAAAA
TACACAGGCCGTTTACGTGTATGAGACCAGTTTCAGGGCGAGAGTCGAAC
CCGTGCACTGGGACCCGACCCGCGGCGATGTGATCGACCTGCACGGTTAT
TCGGCCGCTGTGGCCAAGGCAGCTATTCGATCCGGCCTCAGCAAGCTCCT
GAGGCGATTTCTCACAGCCCTTATTATGTATTTACACCGTTGTTCCTACT
GCCGAACCAACCAACCAAAATACACAGGCCGTTTACGTGTATGAGACCAG
TTTCAGGGCGAGAGTCGAACCCGTGCACTGGGACCCGACCCGCGGCGATG
TGATCGACCTGCACGGTTATTCGGCCGCTGTGGCCAAGGCAGCTATTCGA
TCCGGCCTCAGCAAGCTCCTGAGGCGATTTCTCACAGCCCAGAACGACCC
CGCTGTGGTTAAAGACTTCACGTTCATCACCGGCGTGGGCAAGCACAGCA
AGAGGCCTTTTGAGCCCGTCCTCAGGCCGGCCGCCCAAGACATGCTGCTG
GATGAATTCGATCCCCCGCTCGCCACGCACTTTTTTGACGGAAACGCTGG
TCGCCTACAGGTACGAAGAACGACCCCGCTGTGGTTAAAGACTTCACGTT
CATCACCGGCGTGGGCAAGCACAGCAAGAGGCCTTTTGAGCCCGTCCTCA
GGCCGGCCGCCCAAGACATGCTGCTGGATGAATTCGATCCCCCGCTCGCC
ACGCACTTTTTTGACGGAAACGCTGGTCGCCTACAGGTACGA
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