mRNA_H-paniculata_contig14887.2910.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14887.2910.1
Unique NamemRNA_H-paniculata_contig14887.2910.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14887.2910.1 vs. uniprot
Match: D7FT38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT38_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.670e-22
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    7 ENELLELNADLMEVIREKQEAGALDEAVALQVLLHKNLMRLRLFLCAPDQPIPDAPDDWQPPRAWPSTP 213
            ENELLE+NADLM +IREKQE GAL +A +LQ++LHKNLMRLR F+ APD+PIP+AP DW PP   P TP
Sbjct:    5 ENELLEINADLMVLIREKQEQGALADATSLQIVLHKNLMRLRQFMAAPDEPIPNAPKDWMPPMPTPDTP 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14887.2910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT38_ECTSI3.670e-2269.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14887contigH-paniculata_contig14887:626..2905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002710.1
Exons2
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.307448-CDS-H-paniculata_contig14887:625..7461622929191.307448-CDS-H-paniculata_contig14887:625..746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14887 626..746 -
1691480764.1359966-CDS-H-paniculata_contig14887:625..7461691480764.1359966-CDS-H-paniculata_contig14887:625..746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14887 626..746 -
1622929191.326238-CDS-H-paniculata_contig14887:2813..29051622929191.326238-CDS-H-paniculata_contig14887:2813..2905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14887 2814..2905 -
1691480764.145066-CDS-H-paniculata_contig14887:2813..29051691480764.145066-CDS-H-paniculata_contig14887:2813..2905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14887 2814..2905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14887.2910.1prot_H-paniculata_contig14887.2910.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14887 626..2905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14887.2910.1

>prot_H-paniculata_contig14887.2910.1 ID=prot_H-paniculata_contig14887.2910.1|Name=mRNA_H-paniculata_contig14887.2910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MDENELLELNADLMEVIREKQEAGALDEAVALQVLLHKNLMRLRLFLCAP
DQPIPDAPDDWQPPRAWPSTP
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mRNA from alignment at H-paniculata_contig14887:626..2905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14887.2910.1 ID=mRNA_H-paniculata_contig14887.2910.1|Name=mRNA_H-paniculata_contig14887.2910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2280bp|location=Sequence derived from alignment at H-paniculata_contig14887:626..2905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGAACGAGCTTCTGGAGTTGAATGCGGATCTGATGGAGGTCAT
CAGGGAGAAGCAAGAGGCGGGCGCGCTGGATGAGGCAGTAGCGTGAGTTA
TGGACGAATGTAGGTTGAACAAATTCAGTGCTGGTTGATGCAACATATTC
AAACATTCGGCCGCGGTCTGTGCTGTGTAGCTGTGGCGATCTGTTCTGTA
CACCATATACCCCTATAGTTACTGATTGTACTGTCTTTAGGCTGGTGCCC
GCCAGGAATGAGTGGGGCTTTCACCAGCCGAGAAAAAAGGCGAGGCTTTA
AGATTCGACACTGAGTACTGCTGTTCCGGTGAATGCTAGAATCACTGCAA
GGTGTGACTCCTTATTTATTGCTTAGTTTTACTGTTTGTGGCATTTTTTT
TCTCTCCAACACGTTAGCGTATGGGGGGCATCGGCAGCTTTGAACCTATT
GGTCCTCACATCATTTGGTGAATAGGACTTGAACAATCTTCGGGTCTGCT
AAAAAAGACACCGGGTAACTCTGTGGCGTGGTCGGTTATAACTGCAAGAC
GCCTACCGGTGTCTTGTCGTTATGACCTATTTCGGAACAGGTTTTATGAG
GTAGACCTACATTGCAAGCCTCACCAAAATCTAATCTGGGACAAAAAATG
CAACAGGATTTTTGTTCTTGTAGTGCCCTACTGCTCTCGATTTTGTATAT
AGAAAAGGCACTATTTGCGCCATCAACGCTCGCACATAGCCTATCTAATA
TTTGATTGTTACTATCTGTATAAATAGCTTCCTCTTATCCATCCAGCGAG
GCAGCAGCAGAAGTCGACATTTTTTCGGAAACGTTTCCTAAGCGTTGAAC
AGTCAGGAGCATGGCAAATGCGCCGAGATTAACCAGTAGGAAAGGCACAG
AATGTGGTAAAGTCAGTATTTGTTGATCGTGTTTGCATAACACTACAGTT
GTACCGCAGACTACAGTGTAGTACACACACCACAGTATAGTCCAACCGTA
CACTACAGCACAATCAGTACGGTACAGACAGTCGGTGACTTGGAAGTAAC
CAACCCGAGACAGATGTAGCGAAATTATACAGCGAACTAGTTGTGCCCAC
ACTTATTTGTCCAACTCCTGCATCACTCTCTGTTTTGGGAGTTTGGGTCG
GTTTCACACCCCAAAAGTGCCAAGTAAATCCAGTCTGGTGCTTCGGCCCC
AGGGCGACACTCTCCAAAATTCTAGATGATCAGGGCGTCTCTCTTTTATG
TTACTGTGTGGTGTAGTTGTTCGCCATCTTCGAGGCACTTTCTTCTGATG
GCCTTTGCGTTGAGGATCATCGACCCATACTATGAGAAATCTGGCGTTCC
CATCTCTGAAAATGGGACGCAGTTACGGCATCCCCGATATTTCGCCCTTG
GCACATTGTACGACAAAAAAGCTCTTTTTTAAACGCAGCCTGAAACCTCT
CGGCATCCCTCTCCTAGTGTGTTGTTGTCTCAAGTACAGAAGGTGTCCTG
GGCGACTGCAATAAAAATCTTCGGCCCGGCTTGCCGTTTTCATTATTCCC
TATGGATAATGACAACATACTGTGTACCCTCACCCCGTACAATCCGAACG
CCTTTCATGGCGGGATTTTCTTTTGTACTGATCGCAACATAGGTGGGGTA
TTTCGGTAGACCCATGGCTGCGCGTCAGCATGCTGCCAGCATTTCTTCGT
CCTTGACGTAAGCACAATGGTTCGCTGCGCTCTCAAAAACAAAACAGTCG
GCACCAGACTTGACTTTCGAATGGTGTACACATTTCGGTGCCATTTAAAA
AAAATGTTGTTCCGGAACGTCGACAATGTCTCCACCGCATTTTCGCTACA
TTTTAGTGAGGACAGGGTGAGAAACGTGTGGGTTTGGGTTTCAAAATGTG
TCGTCTTCCCCCCCAATGCACGTCTATAATAATAATGGTAGTGGTAGTAT
ATATATAGTTGGAGGAGGACGAGGAGGAGGACGAATTTTCCGTTACACTC
AAGTATGACAAAAACAGTCAGAGTCAAGGGGGTAGCATTCATAACGGGTG
TCTGCTAGTGAGTATTACCACAGACAGTCACTTAGCACTGGGCCCTACGC
AAAAAATCGGCGTCGCTTAACCCTCTCTCCTTCTCTCCTTTCCCTCATCA
CGCACGCAGTCTTCAGGTACTGCTGCACAAGAACCTCATGCGGCTGCGAC
TTTTCCTTTGCGCGCCTGACCAACCCATCCCTGACGCGCCGGACGACTGG
CAGCCTCCGAGGGCGTGGCCGAGTACGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig14887:626..2905-

>mRNA_H-paniculata_contig14887.2910.1 ID=mRNA_H-paniculata_contig14887.2910.1|Name=mRNA_H-paniculata_contig14887.2910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig14887:626..2905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGAACGAGCTTCTGGAGTTGAATGCGGATCTGATGGAGGTCAT
CAGGGAGAAGCAAGAGGCGGGCGCGCTGGATGAGGCAGTAGCATGGATGA
GAACGAGCTTCTGGAGTTGAATGCGGATCTGATGGAGGTCATCAGGGAGA
AGCAAGAGGCGGGCGCGCTGGATGAGGCAGTAGCTCTTCAGGTACTGCTG
CACAAGAACCTCATGCGGCTGCGACTTTTCCTTTGCGCGCCTGACCAACC
CATCCCTGACGCGCCGGACGACTGGCAGCCTCCGAGGGCGTGGCCGAGTA
CGCCATCTTCAGGTACTGCTGCACAAGAACCTCATGCGGCTGCGACTTTT
CCTTTGCGCGCCTGACCAACCCATCCCTGACGCGCCGGACGACTGGCAGC
CTCCGAGGGCGTGGCCGAGTACGCCA
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