mRNA_H-paniculata_contig14878.2905.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14878.2905.1
Unique NamemRNA_H-paniculata_contig14878.2905.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14878.2905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14878contigH-paniculata_contig14878:5099..6496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size216
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14878.2905.1prot_H-paniculata_contig14878.2905.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14878 5099..6418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.751049-CDS-H-paniculata_contig14878:5098..51581622929190.751049-CDS-H-paniculata_contig14878:5098..5158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14878 5099..5158 +
1691480763.9320886-CDS-H-paniculata_contig14878:5098..51581691480763.9320886-CDS-H-paniculata_contig14878:5098..5158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14878 5099..5158 +
1622929190.7680643-CDS-H-paniculata_contig14878:6262..64181622929190.7680643-CDS-H-paniculata_contig14878:6262..6418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14878 6263..6418 +
1691480763.9406564-CDS-H-paniculata_contig14878:6262..64181691480763.9406564-CDS-H-paniculata_contig14878:6262..6418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14878 6263..6418 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.7837353-UTR-H-paniculata_contig14878:6418..64961622929190.7837353-UTR-H-paniculata_contig14878:6418..6496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14878 6419..6496 +
1691480763.948411-UTR-H-paniculata_contig14878:6418..64961691480763.948411-UTR-H-paniculata_contig14878:6418..6496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14878 6419..6496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14878.2905.1

>prot_H-paniculata_contig14878.2905.1 ID=prot_H-paniculata_contig14878.2905.1|Name=mRNA_H-paniculata_contig14878.2905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
LSFDRSTSSGGAVVLTGFREVRRIKSGQTGFTTRHVKGHCGREDGVNLTA
FLSVSRLAAKMGIEKAIKARG*
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mRNA from alignment at H-paniculata_contig14878:5099..6496+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14878.2905.1 ID=mRNA_H-paniculata_contig14878.2905.1|Name=mRNA_H-paniculata_contig14878.2905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig14878:5099..6496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCGTTTGACCGAAGCACATCATCAGGAGGGGCCGTAGTTCTGACAGG
CTTTCGTGAGGTGGGTTGTCCAGTGGAGGACGTTCTTTTCTGTAGAGATT
GATTGTCTGTTGGGCTGCGAGGTTCGCGTGGTGGAACGAGCCTCACATCG
AGAGGTTTTACTTAAAACTGGGGTCGTTCGTGAGGGCAGGCGAAACAGGA
TACCCCTCGAGGAAGACTGCTATTTTTTGTGGTGCAGAAAAGCCCCGGTA
GGGACAGCTTTTTTCACAGGAGAAACTCCGGTCGTTCGTCAAAAAGACTA
GCCCGTGAGGGAGGCTGGCCGCACTGCTTTCTTGACGGAATATTTTTCTC
TCTATAAATCGTTTTTTATTGCATGGGACAATCAATATCGTTCGTTTGTT
GAAATTTGACACGGTCGTTTGCAGCGACCGTTTGGTCTTTCAATTATTTG
TTGAAAAATAAAGGATCGACTATGATACATTCCTAGGCTTTGTGCCTGGC
GTTTCCAAGCCTGCGAGGGGTTTTTCAGCGACGGTTTGGTCTTGCAATTA
TTTGTAGAAAAATAAAGGATCGACTATGATACATATCCTAGGCTTTGTGC
CTGGGGTTTCCAAGCCTGCGAGGGGTTTTCATCGACCGTTTGGTCTCTTT
GAGGGAAGACGTTTCCGGTCTTGAACCCTACCTCGTTCGGTATAGGCAGG
CTGTGTACTTATCGACAAGTGCAGCAGCTGCTCGAGAACACCAAAGTACT
GGGCTGCCTGGATACTCATCGTTTTTACGGGGACGCATGCCTCAACCGAT
GACGCGGGGCGAGATGCAAGGCTCACAAGGGGATGCGCTTGACGTCACAC
CGGAGGTTTTCACAACAGTAATATATCTTTTGATACAAAACTAGAGAAAG
GATTATCACTGACTCAGACGAACGAAGCACTCCTTGTTAGTCAAGGTGGT
ATTGCACAGTGGTCAAGTGGAGTACCACCCATGATGACTGGGGTGAGTGG
TCGTGGGTTTGAGGCTCGGCAGTCCCCCAGCTGTTTCTTTGTGTTTTCGG
GGCGCAAGTATTTTCGTCTATTTTGTTTTCTTGATTTCGAGATAAATCTC
ATCGATTACCGCAAGCCCGCTGTCGACCCCCTGCTGCTCGTAACCCTCCG
AGTGCGCCTCTCAGGTTCGGCGGATCAAAAGTGGACAGACAGGGTTCACT
ACGCGGCACGTCAAGGGGCATTGCGGGAGGGAGGATGGCGTAAATCTGAC
TGCATTCCTTTCTGTTTCTCGTCTGGCGGCAAAAATGGGAATCGAGAAAG
CGATCAAGGCTAGGGGATGAACAGAAGATACATGAGAGGCTCAGCCACAT
TGTAGCTATTTAGACACGCCCGTCACGAACCGTCTCCTCCGGTTTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig14878:5099..6496+

>mRNA_H-paniculata_contig14878.2905.1 ID=mRNA_H-paniculata_contig14878.2905.1|Name=mRNA_H-paniculata_contig14878.2905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig14878:5099..6496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCGTTTGACCGAAGCACATCATCAGGAGGGGCCGTAGTTCTGACAGG
CTTTCGTGAGCTTTCGTTTGACCGAAGCACATCATCAGGAGGGGCCGTAG
TTCTGACAGGCTTTCGTGAGGTTCGGCGGATCAAAAGTGGACAGACAGGG
TTCACTACGCGGCACGTCAAGGGGCATTGCGGGAGGGAGGATGGCGTAAA
TCTGACTGCATTCCTTTCTGTTTCTCGTCTGGCGGCAAAAATGGGAATCG
AGAAAGCGATCAAGGCTAGGGGATGAGTTCGGCGGATCAAAAGTGGACAG
ACAGGGTTCACTACGCGGCACGTCAAGGGGCATTGCGGGAGGGAGGATGG
CGTAAATCTGACTGCATTCCTTTCTGTTTCTCGTCTGGCGGCAAAAATGG
GAATCGAGAAAGCGATCAAGGCTAGGGGATGA
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