mRNA_H-paniculata_contig14874.2904.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14874.2904.1
Unique NamemRNA_H-paniculata_contig14874.2904.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14874.2904.1 vs. uniprot
Match: A0A6H5JJ43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ43_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.000e-9
Identity = 82/239 (34.31%), Postives = 112/239 (46.86%), Query Frame = 1 
Query:   49 ETGLDVLLRCLEVLSLSDVSCLGP--IPVSGKPTC----DSLAGGAGSQGKVQCVVAAEASLGKNEFDDAAIE--TSSGYRSEAA-------SRT--------VHHSVIRGLVAVLMPWEHSKRSQQAALLVLGNMIENDXXXXXXXXXXXXXXXXXDDAKEIAGSVVDVRGDGDETPAAWGSRGCVEALADALAAQSFVGT----EDGGDDAVDDVRLAGK-RKDFLNSVSEALDGED 681
            ETG D LLRCLEVL+ S+VS +GP   P + +P       +LA  +G     Q  +  +    +N  +++  E  T+ G   EAA       S+T        +   VIRGLV+ L PWEHS+ SQ+AALLVLGN++EN                     +E AG+V  V+       A   S  C   L   LAA +  GT    ED   D    VR  GK R++F+ SV   +  +D
Sbjct:  456 ETGFDALLRCLEVLTTSEVSGVGPPSSPAAAEPPVVVDPPALAQDSGELSPKQ-QLNEQPRKRRNLAEESTEEGPTNGGGDCEAACEVQPETSKTRPSLSRGEMRGRVIRGLVSALTPWEHSRHSQRAALLVLGNILENAI-------------------EEDAGAVGGVKS---PEGARRASESCAVELDRGLAALAAGGTGEWAEDDERDPAAAVRRVGKSRREFVESVHNLVHSDD 671
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BLAST of mRNA_H-paniculata_contig14874.2904.1 vs. uniprot
Match: D7FSE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 9.070e-7
Identity = 75/238 (31.51%), Postives = 96/238 (40.34%), Query Frame = 1 
Query:   49 ETGLDVLLRCLEVLSLSDVSCLGP-------------------IPVSGKPTCDSLAGGAGSQGKVQCVVAAEASLGKNEFDDAAIET---SSGYRSEAASRTVHHSVIRGLVAVLMPWEHSKRSQQAALLVLGNMIENDXXXXXXXXXXXXXXXXXDDAKEIAGSVVDVRGDGDETPAAWGSRGCVEALADALAAQSFVGT----EDGGDDAVDDVRLAGK-RKDFLNSVSEALDGED 681
            ETG D LLRCLEVL+ S VS +GP                                       K+     AE      E  +A  E    +S  R       +   VIRGLV+ L PWEHS+RSQ+AALLVLGN++EN                     +E AG+V  V+       A   S  C   L   LAA +  G     EDG  D    V   GK R++F+ SV + +  +D
Sbjct:  458 ETGFDALLRCLEVLTTSKVSGVGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKLAEEGTAEGPTNGGENCEAVCEVQPETSKTRPSLGRGEMRGRVIRGLVSALTPWEHSRRSQKAALLVLGNILENAI-------------------EEDAGAVGGVKS---TEGARSASESCAVELDRGLAALAAGGAGEWAEDGERDPAAAVERVGKNRREFVESVQKLVHSDD 673
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14874.2904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJ43_9PHAE3.000e-934.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSE1_ECTSI9.070e-731.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14874contigH-paniculata_contig14874:224..4999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1115
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14874.2904.1prot_H-paniculata_contig14874.2904.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14874 251..4652 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.6014261-UTR-H-paniculata_contig14874:223..2501622929190.6014261-UTR-H-paniculata_contig14874:223..250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14874 224..250 +
1691480763.8785846-UTR-H-paniculata_contig14874:223..2501691480763.8785846-UTR-H-paniculata_contig14874:223..250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14874 224..250 +
1622929190.7128012-UTR-H-paniculata_contig14874:4652..49991622929190.7128012-UTR-H-paniculata_contig14874:4652..4999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14874 4653..4999 +
1691480763.9240887-UTR-H-paniculata_contig14874:4652..49991691480763.9240887-UTR-H-paniculata_contig14874:4652..4999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14874 4653..4999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.63751-CDS-H-paniculata_contig14874:250..2671622929190.63751-CDS-H-paniculata_contig14874:250..267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14874 251..267 +
1691480763.8895712-CDS-H-paniculata_contig14874:250..2671691480763.8895712-CDS-H-paniculata_contig14874:250..267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14874 251..267 +
1622929190.661599-CDS-H-paniculata_contig14874:1186..12751622929190.661599-CDS-H-paniculata_contig14874:1186..1275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14874 1187..1275 +
1691480763.8969893-CDS-H-paniculata_contig14874:1186..12751691480763.8969893-CDS-H-paniculata_contig14874:1186..1275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14874 1187..1275 +
1622929190.681972-CDS-H-paniculata_contig14874:2636..31231622929190.681972-CDS-H-paniculata_contig14874:2636..3123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14874 2637..3123 +
1691480763.904482-CDS-H-paniculata_contig14874:2636..31231691480763.904482-CDS-H-paniculata_contig14874:2636..3123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14874 2637..3123 +
1622929190.6992824-CDS-H-paniculata_contig14874:4504..46521622929190.6992824-CDS-H-paniculata_contig14874:4504..4652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14874 4505..4652 +
1691480763.9137335-CDS-H-paniculata_contig14874:4504..46521691480763.9137335-CDS-H-paniculata_contig14874:4504..4652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14874 4505..4652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14874.2904.1

>prot_H-paniculata_contig14874.2904.1 ID=prot_H-paniculata_contig14874.2904.1|Name=mRNA_H-paniculata_contig14874.2904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
MRLPPTAETGLDVLLRCLEVLSLSDVSCLGPIPVSGKPTCDSLAGGAGSQ
GKVQCVVAAEASLGKNEFDDAAIETSSGYRSEAASRTVHHSVIRGLVAVL
MPWEHSKRSQQAALLVLGNMIENDLENDLEKDLQSNPEHGPDDAKEIAGS
VVDVRGDGDETPAAWGSRGCVEALADALAAQSFVGTEDGGDDAVDDVRLA
GKRKDFLNSVSEALDGEDVKDEDLLLQLRDASALVEKTLQREALLR*
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mRNA from alignment at H-paniculata_contig14874:224..4999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14874.2904.1 ID=mRNA_H-paniculata_contig14874.2904.1|Name=mRNA_H-paniculata_contig14874.2904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4776bp|location=Sequence derived from alignment at H-paniculata_contig14874:224..4999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCGCCTAAATGCAGAGAGATAGGGATGAGGTTACCCCCTACGTTAAG
ACGGGGGGGAGGGGGGTTGTATGAACGCGAGAGAGAGAGAGAACTGTTGT
AGCCCCATTTGGCGTTCTATTTTCGTCAAGTGAAAGGGCTGCTTCCGAAC
ACTTAAGCCAGAATCGGATGACAAATTGTAGCGAGACATAGCGTTATAAA
CGCTGTCGGCAGAAGCATGCCTGCTACTGTCTGCTGTTGCCGTATGTATG
TGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTA
TGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATG
CATGTATGTATGTATGTATGTATGTATGTATGCATGTATGTATGGGTGGA
TGGATGTGTGTATGTATGTGTGGATGTGTGGATGGTACTGTCAGCACTGA
ACTGTCTGTCTAAACAGCGGTGGCTCCCCGTCCCCGGCAATCGTGTCATT
AGGGCAATAGATAGGCGGCGTTTTCCTCTTATATTTGAGGTATCTAGGGA
TTAAATCAGGATGTATTACATTGGAACGCTACACACACAAGGGTTGAAAA
CACTGATTCGTCTTATTGCGGCCAACGTTTCACTCACGACTATACTGGTT
CATGTTTAGGGCATGCCAAGCATGTATGCCAAGCGTGTGTGAGGGCAAGC
CGGGCCGATATGACTCACTTTAACAAGTAATGTTTGATTTGTTTTTTCCA
AAATCCGTTGTGTATATATTTTTGTTCAAGCCATACTCTGGCATGATTAT
CAAAAGCTTCTATATAACACTTTAGTAATCTAACAATGGTAGCAAACTAA
ATACCTCTATGGTAACCTCGTTGCAAATGTCAAAAATACGCCCCGCCCGC
ACTCTCATAGTTTGGCACTCGCTCGACCCGCTCTTGTTTTTGGTGGGAGC
ATCAGGTTGGTAGCGCGGAGACGGGCCTAGACGTGCTGCTTCGCTGTCTG
GAGGTACTCTCTTTAAGCGATGTGTCTTGTCTCGGGCCCATACCGGTGTC
AGGTAGAGTGTTGTACACTTGGTGACCCAGATAAGATGACATTGCCCCCC
ACGGAGTGCTGTATATACCCAAGGGTCTGGCGAAATTTCAGAAATCGAAA
ATGTACGTGGTCACGTTCAATTTTGTTAACGATATATTTCAGATTCGGAA
CCTTCATCGAAATTTCGCGAAATTGCTTGTCTTTCAACGTACATTTTTTA
GTTAGGTCATACCGGGGTAGCGGGGGGGGGGGGGGGGGGGGGGGGGTGTG
GGCCGGGGGGAGGGGGAGAAGCCCCCGGGGGGGGGACCGTTTTTTTTTAA
AGAGTCGGGGGACCGCCCTTGTGAACTCAACGTGCCCTCTCCCCCGGGGG
AAATCGCGNNNNNNNNNNTTGATTTTTTATTTTAGTGTATATTTTTTGGT
TGGTGGTTTTTTTTTTTTTTTGTTGTTTGTGTTGGTGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGTCATTGACCG
TAGGAAGCGGTGTAAACGCCCCGCTGGGGCAACCATTTTTTCAACACGAT
TTTCTTGGAGACTAAGTCATTTTCCAGTGCCTACGGACACGGAAAGCCGT
GTCGTTGGAAGTATCTTTCTATTTCATCGAGATGTGTGTGTCATTAGATC
GACGCGCTTTTTCGAGTGCACATGGGTTTTGCTGCCGATAAAAAATCGTG
CTCGAAGCAAATCCGCCCCTCGGGAGCGGTTACACCGAGTGCTCCCCACG
GTATACATCTGCGTTCAGCGATGTGTCTGGCATGACAATAGACCCATGGT
GTACTGTGTTGTTGTGCCTAAGGCGGTTTGCACTCTGCAACGAATCAGAT
TCTTGGGCGCCCTAGCTAAGGTACTATGGTCCACGAAGTGCCGTGTTTGT
TGATGTTGATGATGTTGCTGTTGTTGTGGGGGGGGAAATGCCCTCTTGCA
CTCTGCAACAAGAGTAGACAGCTCGTGTTTGGATTTTTCTTTTTTCATCT
CTTCCTCCCTGTCCTTCCACCCGACCTTTATATTGGTATGTACATTTAAG
CTTGCCCTCTCTGGTCGATCCCCGAAGCGGGGCTCTTCGACCTGCACTCT
GATTCGTTTTTTGTTTTGTTTGCGTCCGCATCGTCTCGATTCTCCATAGC
TTGAGGCTGATTAGCAGTAGATTTGATCGTTATGTCCATGTGTTGGTACT
ACCTACTTCTATGGTTCGGGAGGGGCTTTCCGCCGCATCACCACAGCGTA
GTTGTGATTCTTGACAGATTCATGTTGTGCTCTGTTTTCTGTTTTTGTTG
GTTTTCCTGTTGCCCTGTTTCTTGACCAAACGCAATAATTTTCCCGTCCG
CACACATTTCCAGGAAAACCGACCTGTGACTCTCTGGCGGGGGGTGCTGG
ATCACAAGGGAAGGTGCAGTGCGTTGTCGCAGCGGAAGCAAGTCTCGGAA
AAAACGAATTTGACGATGCAGCGATAGAGACGTCGTCAGGATACAGAAGC
GAAGCGGCATCTAGGACGGTGCATCACAGCGTTATCCGAGGGCTGGTAGC
GGTCTTGATGCCATGGGAACACTCAAAGCGCAGTCAGCAAGCCGCTCTTC
TGGTGCTGGGAAATATGATCGAGAACGATCTCGAGAACGATCTCGAGAAG
GATCTTCAGAGCAATCCAGAACACGGTCCTGATGACGCAAAGGAGATAGC
GGGGTCGGTGGTGGATGTTCGTGGAGATGGAGACGAGACACCCGCTGCGT
GGGGTTCCCGCGGGTGCGTGGAGGCCTTGGCGGATGCGTTAGCTGCTCAG
TCTTTCGTAGGAACAGAGGATGGTGGTGATGATGCAGTGGATGATGTCAG
GTGGGTACGCGTAGCAGGAGCAGCAGCAGTAGTAGTAGCAGCAAGCGCGG
AGAGACATTGTCAGAGCACCGCTTCGCTGCAATTCGTACAGAAATATTTT
CAAGTCATTGCGATTGGTTTACAGCAGGAAGTGCGATTAACGAATCAACG
TCGATGTGGATGGGGAATTATCGTATGGAAGGCAGCGATATAAATCCCCG
CGTGACAACATGCAGAAATTTCTCACGTTGGCTATTCCATGCTCAGGATT
TACGTCTACGTCTCAGATAGCAACTCTTCTTTCTTCCTGCTCATCTGATT
GCGTGTACCACATTTTTTCCCCTCACCTACGTACGTCATTCTGACATCCA
AAAAACGATATCAATGTTTTCCCTATCTATTGTACGGAGAATGTGCAGTT
AGAGAATAACGGTATTTTTTTGTTCGAACCAAGGGCTCGAATCACCAAAA
ACCTTAGATTTCCTCAGCCCTGAAATCGTAAAAACATTCAGAGCGAAAAA
ATTGGTTGTTGTGTAAATCCCCCAAAATCCAGATTTGCCAATTTTTCGCC
CAAATCTGCTACAGCGTTTCGAGCTTTCAGGGTCCAATTGGATTTTTTAT
GTTCACCTGTGTAAGTCTGAATTGTGCAAAATGGCGGTATATTTTGGATG
GTGACAGATACGGAGGGTTGTGGATCGGTACCGATATCGACCGATATGTT
GTCCGATACGATATGATCTATCTCTCGTTTGCCCATTATACAAAAGGTAA
GCAGTCACTAACACTTAATTTTAATCTGATAAAATAAAATGTTAACTTCA
ACTCAAATATGAAATTTCAGGTTCTTTGCACTGCCTCAGCTTCTTTTTCA
CCTTTCCCTCACGGTACTTGTTCACTATCGGTAAGAAAAACAACGCTAGG
TTATGAGGGTGGTCCCCCAATTCTCAGGTAAGACAAACGTAGCTCACCCT
ACTTTAAAATAAATTAATTAGTTTTAAAAATTTTACAGGACTACCACCTT
CTACCCCTCACCAGCCGGGGGCGGCTGCGCCGCCCTGGTTCTGCGAGCAA
CCGATTTCTCTTTTGTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTATATATATATATATATATTTTTTTTTCTTTATCGGTTATTTCCACCT
ATACACAACCTTACAGATATCGATCGGTCACCGAAAACGGGTGAGATACA
CGTAGCCATCGGATTTCGTAACATACCTTGTGAGAAGAAAAACTGGTGTA
GACAAACAAGTGCCCTCACTGCAACAACGAGGACGACTAACTCGCGATTC
CAATATCTCTATATTGGTCTAACCTACATACAAATGTACATAGCTCTAAT
GGTTGTTCTTTTCCTTTTGCTTCCTGTACAGGTTAGCGGGCAAGAGAAAA
GACTTCCTCAACAGCGTGTCGGAGGCGTTGGACGGAGAAGACGTCAAGGA
CGAAGACCTTCTTTTACAACTCCGTGACGCGTCGGCTTTGGTCGAGAAAA
CCCTGCAGCGCGAAGCGTTGCTTCGATAAAAAAACACTTTGCTGTGCGCA
CGCGCTCAACAATCAAGTCCATAAAGCTCGCTCTTTGGTTGGGATTACTC
GTCAGAGTTGACCAGTAAGCAAGTAAGGAGCTTCCCCAGTGTTTACAGGG
TAGTGCCCGCTCGCTTTGTACAATGCCAGTCTTATGAACCCGTAGTACAT
AGTCTCGACCTTGAAGTAGAAGCCTCTTACACTTAATATACAGGAATATT
AGTGTATAGCCCCGCTAGTTTAAGCACAATTTCGTCATGTAATTTTTGTC
TTTAGGAGTACAATAAATGTTAGCCTCGGGTTTTTGCATGGTAGGGTGTC
TTCTCGAGGGCGGGCCGGTACTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14874:224..4999+

>mRNA_H-paniculata_contig14874.2904.1 ID=mRNA_H-paniculata_contig14874.2904.1|Name=mRNA_H-paniculata_contig14874.2904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig14874:224..4999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGTTACCCCCTACATGAGGTTACCCCCTACCGCGGAGACGGGCCTA
GACGTGCTGCTTCGCTGTCTGGAGGTACTCTCTTTAAGCGATGTGTCTTG
TCTCGGGCCCATACCGGTGTCAGCGCGGAGACGGGCCTAGACGTGCTGCT
TCGCTGTCTGGAGGTACTCTCTTTAAGCGATGTGTCTTGTCTCGGGCCCA
TACCGGTGTCAGGAAAACCGACCTGTGACTCTCTGGCGGGGGGTGCTGGA
TCACAAGGGAAGGTGCAGTGCGTTGTCGCAGCGGAAGCAAGTCTCGGAAA
AAACGAATTTGACGATGCAGCGATAGAGACGTCGTCAGGATACAGAAGCG
AAGCGGCATCTAGGACGGTGCATCACAGCGTTATCCGAGGGCTGGTAGCG
GTCTTGATGCCATGGGAACACTCAAAGCGCAGTCAGCAAGCCGCTCTTCT
GGTGCTGGGAAATATGATCGAGAACGATCTCGAGAACGATCTCGAGAAGG
ATCTTCAGAGCAATCCAGAACACGGTCCTGATGACGCAAAGGAGATAGCG
GGGTCGGTGGTGGATGTTCGTGGAGATGGAGACGAGACACCCGCTGCGTG
GGGTTCCCGCGGGTGCGTGGAGGCCTTGGCGGATGCGTTAGCTGCTCAGT
CTTTCGTAGGAACAGAGGATGGTGGTGATGATGCAGTGGATGATGTCAGG
AAAACCGACCTGTGACTCTCTGGCGGGGGGTGCTGGATCACAAGGGAAGG
TGCAGTGCGTTGTCGCAGCGGAAGCAAGTCTCGGAAAAAACGAATTTGAC
GATGCAGCGATAGAGACGTCGTCAGGATACAGAAGCGAAGCGGCATCTAG
GACGGTGCATCACAGCGTTATCCGAGGGCTGGTAGCGGTCTTGATGCCAT
GGGAACACTCAAAGCGCAGTCAGCAAGCCGCTCTTCTGGTGCTGGGAAAT
ATGATCGAGAACGATCTCGAGAACGATCTCGAGAAGGATCTTCAGAGCAA
TCCAGAACACGGTCCTGATGACGCAAAGGAGATAGCGGGGTCGGTGGTGG
ATGTTCGTGGAGATGGAGACGAGACACCCGCTGCGTGGGGTTCCCGCGGG
TGCGTGGAGGCCTTGGCGGATGCGTTAGCTGCTCAGTCTTTCGTAGGAAC
AGAGGATGGTGGTGATGATGCAGTGGATGATGTCAGGTTAGCGGGCAAGA
GAAAAGACTTCCTCAACAGCGTGTCGGAGGCGTTGGACGGAGAAGACGTC
AAGGACGAAGACCTTCTTTTACAACTCCGTGACGCGTCGGCTTTGGTCGA
GAAAACCCTGCAGCGCGAAGCGTTGCTTCGATAAGTTAGCGGGCAAGAGA
AAAGACTTCCTCAACAGCGTGTCGGAGGCGTTGGACGGAGAAGACGTCAA
GGACGAAGACCTTCTTTTACAACTCCGTGACGCGTCGGCTTTGGTCGAGA
AAACCCTGCAGCGCGAAGCGTTGCTTCGATAA
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