mRNA_H-paniculata_contig14853.2890.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14853.2890.1
Unique NamemRNA_H-paniculata_contig14853.2890.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14853.2890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14853contigH-paniculata_contig14853:4..5175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue8.9e-10
Seed eggNOG ortholog2880.D7FV42
Preferred namePHF14
KEGG koko:K02606,ko:K11380,ko:K22156,ko:K22184
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141
EggNOG free text desc.negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
EggNOG OGsCOG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Exons5
Model size678
Cds size678
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14853.2890.1prot_H-paniculata_contig14853.2890.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14853 4..5175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.212919-CDS-H-paniculata_contig14853:3..1021622929182.212919-CDS-H-paniculata_contig14853:3..102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 4..102 +
1691480763.092361-CDS-H-paniculata_contig14853:3..1021691480763.092361-CDS-H-paniculata_contig14853:3..102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 4..102 +
1622929182.2307034-CDS-H-paniculata_contig14853:1274..14541622929182.2307034-CDS-H-paniculata_contig14853:1274..1454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 1275..1454 +
1691480763.104647-CDS-H-paniculata_contig14853:1274..14541691480763.104647-CDS-H-paniculata_contig14853:1274..1454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 1275..1454 +
1622929182.2430336-CDS-H-paniculata_contig14853:3492..36061622929182.2430336-CDS-H-paniculata_contig14853:3492..3606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 3493..3606 +
1691480763.114401-CDS-H-paniculata_contig14853:3492..36061691480763.114401-CDS-H-paniculata_contig14853:3492..3606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 3493..3606 +
1622929182.256323-CDS-H-paniculata_contig14853:4365..45061622929182.256323-CDS-H-paniculata_contig14853:4365..4506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 4366..4506 +
1691480763.1273968-CDS-H-paniculata_contig14853:4365..45061691480763.1273968-CDS-H-paniculata_contig14853:4365..4506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 4366..4506 +
1622929182.2708325-CDS-H-paniculata_contig14853:5031..51751622929182.2708325-CDS-H-paniculata_contig14853:5031..5175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 5032..5175 +
1691480763.138997-CDS-H-paniculata_contig14853:5031..51751691480763.138997-CDS-H-paniculata_contig14853:5031..5175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14853 5032..5175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14853.2890.1

>prot_H-paniculata_contig14853.2890.1 ID=prot_H-paniculata_contig14853.2890.1|Name=mRNA_H-paniculata_contig14853.2890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
CGWKKCVRSFHPWCLMHAQAGLVHRTVKDGTLPCYCPHHDKERGHMPNDT
EFTPDSVLQATALIMPHVVLGDDPLPLAPSGAGRSGRCGNRNQRDTEKSK
AELQLEAEEPAVDVAGPDLDEDGNPLVQLYEDDIPKPRLGPNPVAVEDYW
RRYWEVTSSSYFPLRHDGGKSNKLPEIPYLPKSNDPIFNIPAVKTNAAKA
TEVVEDDGKEGHRKHSNQTKDKVKN*
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mRNA from alignment at H-paniculata_contig14853:4..5175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14853.2890.1 ID=mRNA_H-paniculata_contig14853.2890.1|Name=mRNA_H-paniculata_contig14853.2890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5172bp|location=Sequence derived from alignment at H-paniculata_contig14853:4..5175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGGCTGGAAAAAATGTGTCAGATCGTTCCACCCCTGGTGTCTGATGCA
TGCTCAGGCCGGACTCGTCCACCGCACGGTGAAGGACGGGACACTACCGG
TGACTTTAGTTTAGTGTTGGAATAAGTGGAAGCCGTTATGTGTTCGAGTG
ATGTCCTCGTGTACACGGGGGTCCTGAACTTGTTTTGTTTTTATAAAAGA
CAAAAAGGGACCAGTACTCCAGGTGTCTTCGCATACCGCTAACGAAACTA
AGCAGCTATGCCTTCAATAGAACACTTTGAACCGTTCTTTTTTGCTTATG
AAGAGATATAAGGAAGTCAGCATGAGTCCGAAAATGTGTAGTGTATACTG
TAGACTGCTTGCTGCTATGTCTAGTGTTCGATAACGATATATACATATAT
TTTCGTGGGCGAGAAGACACGTTCGTGCGTTTCTTTTCTCTTTTTCCTTC
ACCAAATTAGTATATAGAGGACTCACGCGCACTCGTCTGTGAAAGAGCCC
CGCTCACTTTTTGAGATGCCCCAGGTATACGTTCTCACTGCAGAAAGAGA
AGCGATCACTTTTTCTTGTCACAAGCGTTTTCTGAGAGATGTTTTGTTTC
AACCATGGCTATCGCCTCTCTCCCTCCCCCTGTAAATGAATGTAAGTAGG
TACGGTAATGGTTTTGAAATTATCAAGAATATCGGTAATGCTTCCAACCA
ACCCATCAGTTCGCCTAGGCTTGAGGTGCAAGATGCAAGACGGTTACATA
CATGCCGAGTATTGCACGCAAACCAACATCGTGACTCGTGCTTCTTCAGA
TTATGCCTGTTACGTGTACTTCCTCATTTGTTGCTTCGTTTCCTCTGGTG
CTGAATTGATGCGAGCATTACCGCCTTGATATGTCCTTCTGTTGCTGTTC
CAACTTGGCTGCTGAGTTACATGTAGCTAGCTCGATAGCTGAGAGTGCGT
GTTGCATACTCTTAACGCGATAAGCACAAGTACTTCAAACACTATTTAAT
AGTAAACATAAAACAAACAAAATCACAGATTCATCAGGCGAGGGATGACA
CACGAAATGTATTCAAAGTCTCTTCTTTTTATTTCTGGGGCTCTTCTTGT
GGACACGGCGCCTTCACTTCTTGACTTAGTATCGCTGATAGGTTCACACG
ACTAATTTTTGAGATCAGCTGTATAACCCTCCCCCCACTCACCTCCTCGT
GCCTTCACACACCCGTGCGTCCCTTCAAATTGCCTGCAAACGTTTCACGT
TCACGTACACATCGCCTACAGTGCTACTGCCCGCACCATGATAAGGAACG
TGGTCATATGCCGAACGATACCGAGTTCACGCCTGACAGTGTTTTGCAGG
CTACTGCGCTCATTATGCCGCACGTGGTCCTAGGCGATGACCCCCTTCCG
CTTGCTCCGAGCGGGGCCGGTCGTTCCGGCCGGTGTGGCAATAGGAATCA
GGTAAGAGTTTATTTGTGATTCTCCGAATAATGGATCTCGTTTGTGACAC
GGAGATTCTGTATATTTATGATTTTCCGATGGGCAGGTCTGTCCGTAAAA
CATGAAAGCTGACAGTTGGTCTTTTCCAAAGGGCAGGGTTTTATTATAAA
AGTATTGTTTATTTTTCCAATAACGAGCAGGTCATGATGCAAGAACCCTG
GTCATATTCTAATGGCTGGGTCTGATTGTAGAGAGTACCACCACGTCTCT
TGTTTTTCATTGACGGATCTCGTGTGCTATCAGACATTATCCAACGCACT
CTTTTTTTGCACTGTTTTGATCTTCATAGGTCAGAATGGTACGTGGGAGA
TACGTTCTTCAAAAGAATGCTGTATGCATAACGTAATTTTACCATGCAAA
CTGCACCCACGTTTTACTTGTGCCCGTATGTCATCCCCCCACCTGCACCC
CTACACCCTCACCTTGTTGACGCAGTCGTTGACACATGACACATGACACA
TGACACATGACACATGACACATGACACATGACACATGACACATGACACAT
GACATATGACATATGACATATGACATTTGACACATGACATATGACACATG
ACACATGACACATGACATATGACATATGACATATGACACATGACACATGA
CATTTGACACATGACATATGACATATGACACATGACATTTGACACATGAC
ATATGACATATGACATATGACATATGACACATGACATTTGACACATGACA
TATGACACATGACACATGACACATGACACATGACACATGACATATGACAC
ATGACACATGACACATGACATTTGACACATGACATATGACATATGACACA
TGACATTTGACACATGACATATGACATATGACATATGACATATGACATAT
GACATATGACACATGACATTTGACACATGACATATGACATATGACATATG
ACACATGACATATGACACAGGACACATGACACATGACACATTACGGGTGT
AGTATGTGTTTGGTCTTTCCGCCTTGTTCTTCTGTCTTACTACCGCCCCG
CCTCGCCACATGACATTTGACACATGACATATGACACATGACACATGACA
CATGACACATGACATATGACATATGACACATGACACATGACATTTGACAC
ATGACATATGACATATGACACATGACATTTGACACATGACATATGACATA
TGACATATGACATATGACATATGACATTTGACACATGACATATGACATAT
GACATATGACATATGACACAGGACACATGACACATGACACATTACGGGTG
TAGTATGTGTTTGGTCTTTCCGCCCCATATGACATATGACACATGACATT
TGACACATGACATATGACATATGACATATGACATTTGACACATGACATAT
GACATATGACATATGACACAGGACACATGACACATGACACATTACGGGTG
TAGTATGTGTTTGGTCTTTCCGCCTTGTTCTTCTGTCTTACTACCGCCCC
GCCTCGCCCCTCTTGATTTAACTTGTCTGATGAATGTAAATCACTGAAGG
CCCCCCTCTCTTTTTTACAGTAGTATTACTTGTACAGTAGTTATCACCGC
TCTCTCTAGTTCGTTAATTTTCGGAAAACAATCGTGAGAACACCTACTCG
CTTGTGTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTG
TGTTTTATTTGTTTTTGTTTTGTGAAGACGGTTGTTCGTTCACTTCACCC
GTTCTTGTTATTCGTGATTGACTACTTCTCATCGATCAAGATCCGGCTCA
CCATATATATATATATATATATATATATATTGTGTCCTACATAATTCACA
TCGATAAAAACCAGTGTGATTGATCCATTTTTCGCAAGATTTTTGTTTTT
TCAAATTGCACGGTTGTATTCACTGCAAATCAATCCGCGACGACAAATAG
CCGACGTACCAAATACGTACAAATGGATTACACCGGTTTTTTTTCGTTGT
TCTTTGTTTTTCTCCTTCGGTATATCATGTTTTACGCAGCGTGATACGGA
GAAGTCCAAAGCAGAGCTTCAGCTCGAAGCCGAGGAACCAGCCGTCGACG
TGGCGGGTCCAGATCTAGATGAAGACGGAAATCCTCTAGTCCAGCTCTAT
GAAGTATGATCCTCAGAGATGCACTTGGAAATATTAGTAATCTTTTTGTT
TCGGAAGGGGGGGGGAGTAAAGGGCGTTTTAGTCGGGAGGGCCCTGTTGA
TGCGTGCAGACGGAGAGTAGAGTATCCCTGTCCTTGACCATGTTCCAATT
TTGCTGGATGAGTATCGATCACTTTAGCGCCTTACCGTGCAAATTGACAA
GACTCGTGAAGGTTCATTTTCTGTCCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTTTCTCTCTTTCTCTCTCCTGCGTTTTCACTTGTTCGTTTCCTC
TAGTATAGGAGTAATCCATGCACTCCTAGTTTTGTTGGTTTGTTTCTGGT
GGAATCAGTCATCACTGAACAGTGTAAAACTGCCTAAGCTTACCTCCAGT
CTCAATTGATTGTTTGATTGTTACGGACATGTTTCATATTGGTATTTTTA
CATGTTCAAACCATATACACATGCCGTTGCTCCTACCCCGCACTGACTCG
CTCCGCCCGAGTTGTCATACTCCAATTTTGCTGATGGATGTATTAGTTGT
GTTCTTATTTTGCTGAAGATTGCACCTAGCCTGGATTTATTGTGTTAACA
GTCCAAGTAAATTCCTCAACATACAACCATATGTTGTGACACAGCTAAAA
ATAGTTATATGAAGAAGTCAGTCAAGGTCTGTGAGTAACAAGACACCCTC
TCCCTCCTCCCCCCACATGAAATCATTTATATTGTCTCACGGTTCCCATC
CCCCCTCGGCAGGATGATATTCCAAAGCCAAGACTCGGGCCGAACCCGGT
GGCTGTGGAAGATTACTGGAGACGTTATTGGGAAGTCACCTCGTCGAGTT
ACTTTCCGCTCCGTCACGACGGAGGGAAGAGTAACAAGCTCCCGGAAATA
CCGGTAGGTTTGGGGTTTGGAGAAGTTGCAGGGTTGTCGGGTGTTGGTGG
AGTTGTGTGCTGGTGGGAGTTTATATATATATATTGTGCTTGTCGGGGGA
AGGGAGGAGGGGAGAGGGTTGGGGGGGTGCTTTGAAATATATTTCTCGTT
ATTGTAGTGAATTAACCCTGGTACAGTCAGCTGAACTATTATTCTGACCC
TGATATAGTAACTCCGTTGTACCCATGTTGAGGTTACGCAGTTGACTTTA
ACCTGCACTTGAATAATGACACTTATCAGCAAAGTTAGATTATGACCAGT
AGGGGGAGAGGCGTTTTCATGTTGTAATATGCAGACCTGGTCAGGTGTGC
GGACGTGACTTGTGCCTTGTTGCGGTCATGAGCCTTCCGTTATGTTGTTA
TTGTTGTTATTGTTGTTTTTTCGTCTCTTCTTCTCTCTCTCAATGCAATG
TGTTGCCTTCGTCCTTCTTTATGCGCCCTTCACAAATTACTACCCCCGTT
TCCCTCCACTCTACTGTTGTGTGTACAGTATCTCCCTAAATCAAACGATC
CTATCTTCAATATTCCGGCCGTGAAGACAAACGCTGCAAAGGCCACAGAG
GTGGTGGAAGACGACGGGAAGGAAGGGCATCGAAAGCATTCCAACCAGAC
CAAGGACAAGGTGAAGAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14853:4..5175+

>mRNA_H-paniculata_contig14853.2890.1 ID=mRNA_H-paniculata_contig14853.2890.1|Name=mRNA_H-paniculata_contig14853.2890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig14853:4..5175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGGCTGGAAAAAATGTGTCAGATCGTTCCACCCCTGGTGTCTGATGCA
TGCTCAGGCCGGACTCGTCCACCGCACGGTGAAGGACGGGACACTACCGT
GCGGCTGGAAAAAATGTGTCAGATCGTTCCACCCCTGGTGTCTGATGCAT
GCTCAGGCCGGACTCGTCCACCGCACGGTGAAGGACGGGACACTACCGTG
CTACTGCCCGCACCATGATAAGGAACGTGGTCATATGCCGAACGATACCG
AGTTCACGCCTGACAGTGTTTTGCAGGCTACTGCGCTCATTATGCCGCAC
GTGGTCCTAGGCGATGACCCCCTTCCGCTTGCTCCGAGCGGGGCCGGTCG
TTCCGGCCGGTGTGGCAATAGGAATCAGTGCTACTGCCCGCACCATGATA
AGGAACGTGGTCATATGCCGAACGATACCGAGTTCACGCCTGACAGTGTT
TTGCAGGCTACTGCGCTCATTATGCCGCACGTGGTCCTAGGCGATGACCC
CCTTCCGCTTGCTCCGAGCGGGGCCGGTCGTTCCGGCCGGTGTGGCAATA
GGAATCAGCGTGATACGGAGAAGTCCAAAGCAGAGCTTCAGCTCGAAGCC
GAGGAACCAGCCGTCGACGTGGCGGGTCCAGATCTAGATGAAGACGGAAA
TCCTCTAGTCCAGCTCTATGAACGTGATACGGAGAAGTCCAAAGCAGAGC
TTCAGCTCGAAGCCGAGGAACCAGCCGTCGACGTGGCGGGTCCAGATCTA
GATGAAGACGGAAATCCTCTAGTCCAGCTCTATGAAGATGATATTCCAAA
GCCAAGACTCGGGCCGAACCCGGTGGCTGTGGAAGATTACTGGAGACGTT
ATTGGGAAGTCACCTCGTCGAGTTACTTTCCGCTCCGTCACGACGGAGGG
AAGAGTAACAAGCTCCCGGAAATACCGGATGATATTCCAAAGCCAAGACT
CGGGCCGAACCCGGTGGCTGTGGAAGATTACTGGAGACGTTATTGGGAAG
TCACCTCGTCGAGTTACTTTCCGCTCCGTCACGACGGAGGGAAGAGTAAC
AAGCTCCCGGAAATACCGTATCTCCCTAAATCAAACGATCCTATCTTCAA
TATTCCGGCCGTGAAGACAAACGCTGCAAAGGCCACAGAGGTGGTGGAAG
ACGACGGGAAGGAAGGGCATCGAAAGCATTCCAACCAGACCAAGGACAAG
GTGAAGAACTAATATCTCCCTAAATCAAACGATCCTATCTTCAATATTCC
GGCCGTGAAGACAAACGCTGCAAAGGCCACAGAGGTGGTGGAAGACGACG
GGAAGGAAGGGCATCGAAAGCATTCCAACCAGACCAAGGACAAGGTGAAG
AACTAA
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