mRNA_H-paniculata_contig14852.2889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14852.2889.1
Unique NamemRNA_H-paniculata_contig14852.2889.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14852.2889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14852contigH-paniculata_contig14852:684..5434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_003430.1
Exons3
Model size1878
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14852.2889.1prot_H-paniculata_contig14852.2889.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14852 696..3756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.057758-UTR-H-paniculata_contig14852:683..6951622929182.057758-UTR-H-paniculata_contig14852:683..695Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14852 684..695 +
1691480763.023018-UTR-H-paniculata_contig14852:683..6951691480763.023018-UTR-H-paniculata_contig14852:683..695Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14852 684..695 +
1622929182.1300077-UTR-H-paniculata_contig14852:3756..51301622929182.1300077-UTR-H-paniculata_contig14852:3756..5130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14852 3757..5130 +
1691480763.0724342-UTR-H-paniculata_contig14852:3756..51301691480763.0724342-UTR-H-paniculata_contig14852:3756..5130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14852 3757..5130 +
1622929182.1501746-UTR-H-paniculata_contig14852:5170..54341622929182.1501746-UTR-H-paniculata_contig14852:5170..5434Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14852 5171..5434 +
1691480763.0816412-UTR-H-paniculata_contig14852:5170..54341691480763.0816412-UTR-H-paniculata_contig14852:5170..5434Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14852 5171..5434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.0724287-CDS-H-paniculata_contig14852:695..7191622929182.0724287-CDS-H-paniculata_contig14852:695..719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14852 696..719 +
1691480763.0408962-CDS-H-paniculata_contig14852:695..7191691480763.0408962-CDS-H-paniculata_contig14852:695..719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14852 696..719 +
1622929182.1124344-CDS-H-paniculata_contig14852:3552..37561622929182.1124344-CDS-H-paniculata_contig14852:3552..3756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14852 3553..3756 +
1691480763.061496-CDS-H-paniculata_contig14852:3552..37561691480763.061496-CDS-H-paniculata_contig14852:3552..3756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14852 3553..3756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14852.2889.1

>prot_H-paniculata_contig14852.2889.1 ID=prot_H-paniculata_contig14852.2889.1|Name=mRNA_H-paniculata_contig14852.2889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MARELSQQLDQQRGTLERRAKTAEALRESAQKAHLECLASRTRVSVLLRV
VASSLISVTVSPLPCFRSVFQLINV*
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mRNA from alignment at H-paniculata_contig14852:684..5434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14852.2889.1 ID=mRNA_H-paniculata_contig14852.2889.1|Name=mRNA_H-paniculata_contig14852.2889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4751bp|location=Sequence derived from alignment at H-paniculata_contig14852:684..5434+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGTTGGCGATGGCGCGGGAGTTGTCACAGCAGGTGAGGCAGTCCCT
GATATAACCAGGTTTTTGCTCATCCCCTGATAGATAATGCCACCTACACC
CCGCAAAGTATTTTTATTCAGTGTCGGGTTTCCACGCATTTGTAACCTGA
TTTACTTGATATAGGTTGGGTACTGGCTCGTGACACTCAACACACACTTG
GGTATGTGCCTAATCTAGGGCTTGATCTTCTTGGACTTTCAATCCGCGTT
ATGAAAATCCCAAACGCCCCAATGAACACTGCTTTTTCTGCTACTTTCTC
TGTGAAGACAGTTTTTTCCTTATGACTTCAAAGATATATAAGATGAACCC
TTAACTGTAGTTTTCGCGCACACGATGCAAAAAACCGCACCCCAATCGAC
GACCTTGCTGAGGAGTATATTTATTCACAAGGTAGCCTTTCAACACAACA
AGTACCCCAAACTACTCGAATTTAAAGTGGCCCATCAACACCATAAAAGC
ACCCAAAACTACTCGAATATAGACTGCGGGAAAGGTAGGTGCCATCCCGG
TTCGACCGAACCAAGTAGGCAGTGTGGGGATTGCACCCACTACAAGAACT
CTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCG
GGCGTTGGTCCGTGCTCGCACCGACATATGCGAAAACTAACCCCTTCATC
GGAAACCATCCGATATTTGAAGAATTGCTTCTGCTGGTATTGTACCAGAC
AGGACCAAGCAACGCTTCAAAATGTTGATGCGGCCACTCAGGCCACGATC
CCGTCCCAAGGGAGCTCATGAAGCACTCACTCTCCATCCCTGACGTCACG
GCGATGTGGAGGACATACAGGAGATAACCAGTGCGTGTTGCATAGATGGT
GGGAGATACGGTCCCTGCTGCTTCTTATACTGCCTTATCTTGGCATGTCG
TAGCAGCGGTCGGGAGCGGCTGCTCTTGCTTGTGCTCATCCATCTTCCCA
GTGCCGTCCGGCCACTGGATGCGGTCTACTCGAGCTGGTGTGGGATGCCG
TGCGTGCTGTGTGCGCAGATGCTACTGCTGTTGCACTCGGAGGGAGGCTG
TGAGAGGCAGCTCTTGCATGTGGAGCAGTTTCTCTGTTCTGTCTGTAGTT
TATCTGCCTTTCTGATGGCCTTTTTGGGGTTGTTCATGTTTTCGATTTTT
TTTGGATATCCTGCCTCTTTTGGGAGTTTTCATTTTTTAGATTATTTAGC
TTACGCTGGATCTCTCGGTATTTATTATGATTATATTTATTATTTTCAGG
TGATGTTGGGTCTCTTGATGGTTGTTTGTGCGTGTTTTTTCTAGTGACGT
CAACTTTATTTTTTTTCTTATTTGGCCCAAACCCTCTAAAAAGTCGGCAA
TAAATACGTGGTCTTTCCAACACAATTACCGCACTATAGAGGACTTAGAC
GCACCCCTAACTGTAGGTTTACAAAAAACTTGGGAAACCATCGGTAGTTG
TTGGGTAAAACATTATTCGGTAAGCGACAGAAACGGTTACAACCGGCACT
CGTTTGAACGAGAACAACTATAGGCAAAGCGTATGTACAGCAACGGTGTC
AGCACCTCCCTGAATCCGTAATTTCCCTCCTTTTTTGAGTGCGCTCACCC
GTTTCGGCACCTACATCGACCTACCTCACAGAACGTTCCACCAGAAAAAC
GCATATTTTCTTTCTCTTTTATCACTGCCATAAGTACGACCCCAATCATC
GACAGGTTAAACTCCACTGGGGGAGGTGGGGGGTTACCCATGTCCAGGTT
ATGTAGCTTACCTTAACTTTCAGTTGTTTACACTCCCAGAAAAAACTATA
CAACTTAGGGAAGAAGAGCTTGGCTTTTCAACCATTTTAGTGCTAGCAAG
AGGCGCTTTTTGTCTAATGTTTTCACTGTGTATTCGGCTAGAGACACGCT
CGGATAACTCGACTAGCTAACTGCATATTGGCTTTGCGGACTGGTTCCCA
GCGCACCAAAAAACACTCGAAAGTGGTCAGAGAGCAGAACGGTGTTGGCG
ATTTTTTCCCCTGCGGATAGATGCCAGTAGTGGAGGACGAGTGACAGTTT
TTAGTATGTAACCTTGCCGCAAAGTAAATTCATCAGCGAGAAGGTTGATT
TTCAGCAAGATGCTGGAAAACTAGTGCAGTGCTGCAGAATGCCTAGTATT
TGCACGCGTCTGTCCGACAGATTTAATCTTACAAGTTTAAATTTTCGGTG
TTTTGTACATGTCGTACACGTTAGCTCATCGTTCTTAGACCACACAGAGC
AGCCAGAAGACTTCCTCGTGGCGAGTAAATCGAGACAAAAGCGTGAACTG
TTGCGTAGACCGTGCCTTCCAGAACGGTGCACTCACGCCGATAAATTCCA
TTGTTTTTTTGCTCGACTCTGTTTTGTTCTGTCAGACGTGAATTTAGGCC
TGCGGAGATCCAAAAATATCATAGTAGAACCAGCGGACGAAAGCTGAAAC
AATCCTGTCCGGTTTTAGTGTCACAAAATAGGTTTTCCCCCTGTCTCCTG
GGGCTCTTGAGACTTGAAAGAAAAAAGCACGGATTTGAAAATATCTGTTG
ATTGGCAAAAATGGAGAGCAACAAATTCAACAATATCTGTCCGCTCTAAT
TTAAGATCGATCAAACAAACATTCCTGCACATGGGTCTAATTCCATTTTC
CGTGTTTTCTTCACAAGGAATACTGAAAAATTCAATCGTAAAACAGGTAT
TCTTAAAACCCGACCAAGAAACAAAAGAGTAACTAACTGTCCCTAACTCA
TGCTTTCACCCTCCCTTGTTCGTTACACGATTCGCACGTGCTCTGAAAAC
GCTCGACGTACGTAAGCAGCTTGACCAGCAGAGAGGTACGCTTGAGCGAC
GGGCGAAAACCGCCGAGGCGTTACGGGAAAGCGCCCAAAAAGCGCATCTT
GAGTGCCTCGCCAGCAGGACACGGGTGAGCGTGCTCCTGAGAGTGGTTGC
AAGTTCCTTAATATCTGTAACCGTGTCTCCTCTTCCTTGCTTTCGTTCTG
TTTTTCAGCTGATAAACGTGTGAGTGGGAATGGGACGTACGTGAAGCCGC
GTGCATGCTTTCACAAATAAATTTCTTGAATCTCGAAGGATAACTTCAAA
TGGTGTAAACGACTTTTTGAGAAAGAGTCTTCGTCTGTGTTTCAGCAGGT
GCGGGATTTATATCACACCTGAAAGAGGATGTTGACCCCTCTTGATTCGT
TTTTAACAACATTCACCACAGTCGTGGATAGTCCAGGGGTACATGGCGTC
AACGAGCTTGCTCATGCTCAACCTTGAAGCGAATATTCGAACGCATTTCG
TCTAAGCTTTCCGAAGTATTCGAGTTTGTCTGGAGGGTGAAAAGTTGTGC
TGACTTTGTATGTTTCGTGGTGCAAGGGTCATCTTCGAAAACAATCTTTA
CCGCCGTGTCTTCCACGTTCACGGCGGGCGGGTAGGTCTCTTGGACAACT
GACTTTTGTCGGTTGTTGGACCATTTTGTTATTTATTGCTTTCAAATCGA
TGTTCGAATTTTTTAGCTGAGTGAATTAGTCCTCGTGTCAAACGTATTTT
CTCACACCAGTTCGAACCAAGATTCTTCGATAAGAAGCAGCTGTGAATGA
ATGTAAGCTCACACTGAGCGGTGGTCATGAGGAAATATTAGATATTGACG
CCAATCTCATTCTAGATGGTTCGTTCGACGATCAAGGGGTTGCTAGGGTG
TTGGGCCCCGGAGTGTTCCACGAGGGGGTGGGGTACAGTTACCTTTTCTC
CCCTAATAGGATAATGAGTATGACAAATAACGAATTGAAGTATATGTAGT
CATGATCCAATCGGCCTCGCCAAGGGAAGGTGAAGTGTACTGTTTCGAAG
TTTTATACGGCATGTATGCGTGTGTGATTTATTTCAGTATGGAAGGTGAC
GGGTAAAACCAAATTTTGTAATACAAAATAAAGCACAAATTTTTTACATG
GTTGTTAAAATTTTCAAGTAATGGAGGACAGTGCAGCAGTATTCTCTCTC
CCCTCCGCGCGCGCACCTGGAATAGCGGTTCTAGGAGATGAACATTGGCC
TTAAAAAGCGAGGAGAGTTGAAGTGCGTCGATAAAATAGTTGAAAAATGT
TTGAGCCACATTTGGCGAAGTAGGAAAGAGCTACTGACCATCATCGGGTA
CTGCTTTGATAGGAACAAAGCTCCGTCCTCCCGAGGACTACATGCGTGGT
CAATGGCCTAACAATTACGGCATTCAAAACTTGCGTACGCCCCCCTTATG
GGTCATGATCTAATTTTGCTGATGAGGGTATACAACTGAAGTTTCAAGTC
AGCTGTATATCCTCAACATGGATATAATGGGATTATTGTATGAGCTTCAG
AGCTTAGCTCTACCAGCTGGGGCAAGTAGGTTGACTGACCAGCGAGAGTT
CCGTTTGGAAATAGAGGATGAGTACGCCCTTCCCCCCCCCCGCCCCTCGC
CTGTGACATTTTTGTACTCTATCCCCTAGCCAGCATTGTGTGGCAGCACT
TTGTGAAGGATAGTGAGGCCAATCCAACCTAAACAATGCATCACGAAAAT
AGGATTTCTAGGGTGTGCGTTGTAGAACACGCTAGAGTATCTTGATCGAT
CAAAGACTGACACACTGAGTAAAGAATGTGGTAACTATGTCGACATCCTG
AGTGATGATAATGGTGATGGCGACAAAAAAAAATCAGAACAATTTAGTTC
G
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Coding sequence (CDS) from alignment at H-paniculata_contig14852:684..5434+

>mRNA_H-paniculata_contig14852.2889.1 ID=mRNA_H-paniculata_contig14852.2889.1|Name=mRNA_H-paniculata_contig14852.2889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig14852:684..5434+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGGGAGTTGTCACAGCAGATGGCGCGGGAGTTGTCACAGCAGCT
TGACCAGCAGAGAGGTACGCTTGAGCGACGGGCGAAAACCGCCGAGGCGT
TACGGGAAAGCGCCCAAAAAGCGCATCTTGAGTGCCTCGCCAGCAGGACA
CGGGTGAGCGTGCTCCTGAGAGTGGTTGCAAGTTCCTTAATATCTGTAAC
CGTGTCTCCTCTTCCTTGCTTTCGTTCTGTTTTTCAGCTGATAAACGTGT
GACTTGACCAGCAGAGAGGTACGCTTGAGCGACGGGCGAAAACCGCCGAG
GCGTTACGGGAAAGCGCCCAAAAAGCGCATCTTGAGTGCCTCGCCAGCAG
GACACGGGTGAGCGTGCTCCTGAGAGTGGTTGCAAGTTCCTTAATATCTG
TAACCGTGTCTCCTCTTCCTTGCTTTCGTTCTGTTTTTCAGCTGATAAAC
GTGTGA
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