mRNA_H-paniculata_contig1484.2882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1484.2882.1
Unique NamemRNA_H-paniculata_contig1484.2882.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.060e-58
Identity = 112/262 (42.75%), Postives = 165/262 (62.98%), Query Frame = 1
Query:   10 EAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVPF---VRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIA-GRREKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783
            +A KW+ A E E+E+L KN TWE   L  LP GRKAI +KW+FK K   +G + RYKARL+A+GF Q  G DF ET APVA+ +++R + S+AA++   L  MDV  A+L+  +EEE+++K P  F    +D  +   V +L+++LYGLKQS R WN T+D F+  IG  +  T  C+Y  RDD  +  + V +YVDDL++A    + +   K  +S+RF M DL  L   L +EV+RD  +G +++ Q  ++H VL  +G+
Sbjct:    5 DASKWKEACESEFESLCKNKTWE---LVPLPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGF----VDAKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGM 257          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 193 bits (490), Expect = 9.710e-57
Identity = 102/260 (39.23%), Postives = 167/260 (64.23%), Query Frame = 1
Query:   10 EAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVP-FVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783
            +A KW+ A + E ++L+KN TW   D+  LP GRKAI  +W+F+ K  + G + R+KARL+A+GFSQ    D+ ET APVA+ +++R V S+AA++  +L  MDV  A+L+  ++E++++  P  +     D P  V +L++SLYGLKQS R WN T+D+F++ +G  +  +  C+Y  RD  G+  + VA+YVDDLV+A   +++ +  KH +S+RF M DL  L   L +E++ D  +G +T+ Q  ++  +L  +G+
Sbjct:   35 DAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGM 287          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 199 bits (507), Expect = 1.230e-56
Identity = 105/260 (40.38%), Postives = 169/260 (65.00%), Query Frame = 1
Query:   10 EAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVP-FVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783
            +A KW+ A + E ++L+KN TW   D+  LP GRKAI  +W+F+ K  + G + R+KARL+A+GFSQ  G D+ ET APVA+ +++R V S+AA++  +L  MDV  A+L+  ++E++++  P  +     D P  V +L++SLYGLKQS R WN T+D+F++ +G  +  +  C+Y  RD  G+  + VA+YVDDLV+A   +++ D  KH +S+RF M DL  L   L +E++ DR +G +T+ Q  ++  +L  +G+
Sbjct:  294 DAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGM 546          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 198 bits (504), Expect = 1.250e-56
Identity = 114/271 (42.07%), Postives = 166/271 (61.25%), Query Frame = 1
Query:    1 KDPEAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIA-GRREKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGLTSVE--EYP 804
            K PEAE W+AAM++E  +L +NGTW+  DL   P GRKA+  KWIFKRK  EDGN+ RYKARL+AQGF+Q  G D+ E  APV R  T R + +VA++    ++  DV  AYL+  +EE +F++ PP +   + D   V  L+KSLYGLKQ+G  WN   D  L  +   +S   PCLY  R+  G T L++  YVDD+VIA    E+ +E    +++ F++  L  +S  L I++ R+    S+  SQ +YI ++L+ +G+   +  +YP
Sbjct:    2 KGPEAELWKAAMDDEMTSLRENGTWQLTDL---PPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVI--YVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINRNEKGFSL--SQQTYIKQILEQFGMNQAKPSKYP 263          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.550e-56
Identity = 111/255 (43.53%), Postives = 161/255 (63.14%), Query Frame = 1
Query:   25 RAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDV-PFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783
            + A + E++A +KNGTWE   L  LP G + I + W+   KR + G + R KAR +A+G+SQ  G D+  T APVA M+T+R V ++A   D EL+ MDVD AYL + +EE++++K PP +  +  +    V RLRKSLYGLKQSGRNW+  +D +  G GL+ S   PCLY     +GE  L++ +YVDDL+I    R   D+FK +IS+ F MKDL  L  +L + ++R+R N ++ ISQ  YI  +L  +G+
Sbjct:  210 KKAKDAEYQAHMKNGTWE---LTPLPKGERCISSGWVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGM 460          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 191 bits (484), Expect = 5.980e-56
Identity = 101/255 (39.61%), Postives = 165/255 (64.71%), Query Frame = 1
Query:   25 RAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVP-FVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGRREKV-DEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783
            + A + E ++L+KN TW   D+  LP GRKAI  +W+F+ K  + G + R+KARL+A+GFSQ  G D+ ET APVA+ +++R V S+AA++  +L  MDV  A+L+  ++E++++  P  +     D P  V +L++SLYGLKQS R WN T+D+F++ +G  +  +  C+Y  RD  G+  + VA+YVDDLV+A   +++ +  KH +S+RF M DL  L   L +E++ DR +G +T+ Q  ++  +L  +G+
Sbjct:    1 KEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGM 248          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W8AQS8_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AQS8_CERCA)

HSP 1 Score: 195 bits (496), Expect = 1.030e-55
Identity = 108/258 (41.86%), Postives = 161/258 (62.40%), Query Frame = 1
Query:   13 AEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIA-GRREKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783
            A+ W  AM+ E+EAL+KN TWE   L  LP G+K +R KWIF  KR +DGN+ R+KARL+A+G SQV G ++ ET +PV R +T+R +F++AAE+   L  MDV  AYL++ + E++++  P  F        +  +L+K+LYGLKQSGR WN  LD  L  IG  +  + PC+Y        +  ++AVYVDDL+IA      ++  KH ISQ  ++ D   +   L++E++RD   G+I ISQ  +I ++L+ Y +
Sbjct:   21 ADNWYEAMKVEYEALLKNKTWE---LAELPKGQKRVRNKWIFAIKRNKDGNVERFKARLVAKGCSQVYGVNYTETFSPVVRYNTIRMIFALAAEYGLHLHQMDVSTAYLNSELVEDIYMCQPEMFVDQRFP-DYCLKLKKALYGLKQSGRQWNIKLDTILKRIGFKQCESEPCVYVKHKVKQMS--IIAVYVDDLLIACSDYNNMNNIKHMISQEVQVVDKGPVQHFLSMEIERDGETGAIAISQQGHIRKLLREYNM 272          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.220e-55
Identity = 104/239 (43.51%), Postives = 152/239 (63.60%), Query Frame = 1
Query:   58 VKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLD-VPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVL 768
            ++NGTW+   L  LP G + I + W+   KR ++G + R KAR +A+G+SQ  G D+  T APVA ++T+R + ++A   D EL+ MDVD AYL + +EE+++VK PP +     +    V RLRKSLYGLKQSGRNW+  +D +  G G + S+  PCLY     +GE  L++ +YVDDL+IAG  R+ VD+FK  IS+   MKDL  L  +L + ++R+R    + ISQ +YI  +L
Sbjct:    1 MRNGTWK---LTPLPKGERCISSGWVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMML 235          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.550e-55
Identity = 111/255 (43.53%), Postives = 162/255 (63.53%), Query Frame = 1
Query:   25 RAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLD-VPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVLKGYGL 783
            R A + E++A +KNGTWE   L  LP G + I + W+   KR ++G + R KAR +A+G+SQ  G D+  T APVA ++T+R + ++A   D EL+ MDV+ AYL + +EE+++VK P  +  + L+    V RLRKSLYGLKQSGRNW+  +D +  G G + S+  PCLY     +GE  L++ +YVDDL+I    RE VD+FK  IS+ F MKDL  L  +L + ++R+R    + ISQ +YI  VL  +G+
Sbjct:  219 RKARDAEYQAHMKNGTWE---LTTLPKGERCISSGWVDSDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGM 469          
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 193 bits (491), Expect = 3.140e-55
Identity = 108/239 (45.19%), Postives = 152/239 (63.60%), Query Frame = 1
Query:   58 VKNGTWESEDLGRLPAGRKAIRTKWIFKRKRKEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHDFELEGMDVDAAYLHAPVEEELFVKLPPEFSPF-SLDVPFVRRLRKSLYGLKQSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGSYIHEVL 768
            +KNGTWE   L  LP G + I + W+   KR ++G + R KAR +A+G+SQ  G D+  T APVA ++T+R V ++A   D EL+ MDV+ AYL + +EE+++VK PP +  + S     V RLRKSLYGLKQSGRNW+  +D +  G G + S+  PCLY     +GE  L++ +YVDDL+I    RE V +FKH IS+ F MKDL  L  +L + ++RDR    + ISQ +YI  +L
Sbjct:    1 MKNGTWE---LTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMML 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1484.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA2.060e-5842.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H8P6_PHYRM9.710e-5739.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9Y1_PHYRM1.230e-5640.38CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A182GIT5_AEDAL1.250e-5642.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA4.550e-5643.53Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
H3H934_PHYRM5.980e-5639.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
W8AQS8_CERCA1.030e-5541.86Retrovirus-related Pol polyprotein from transposon... [more]
W7TII5_9STRA1.220e-5543.51Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TIM1_9STRA1.550e-5543.53Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA3.140e-5545.19Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1484contigH-paniculata_contig1484:245..1057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue1.3e-47
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size813
Cds size813
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.778663-CDS-H-paniculata_contig1484:244..10571622929180.778663-CDS-H-paniculata_contig1484:244..1057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1484 245..1057 -
1691480762.4995625-CDS-H-paniculata_contig1484:244..10571691480762.4995625-CDS-H-paniculata_contig1484:244..1057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1484 245..1057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1484.2882.1prot_H-paniculata_contig1484.2882.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1484 245..1057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1484.2882.1

>prot_H-paniculata_contig1484.2882.1 ID=prot_H-paniculata_contig1484.2882.1|Name=mRNA_H-paniculata_contig1484.2882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
KDPEAEKWRAAMEEEWEALVKNGTWESEDLGRLPAGRKAIRTKWIFKRKR
KEDGNMARYKARLLAQGFSQVEGEDFFETSAPVARMSTLRTVFSVAAEHD
FELEGMDVDAAYLHAPVEEELFVKLPPEFSPFSLDVPFVRRLRKSLYGLK
QSGRNWNNTLDNFLVGIGLNRSTTHPCLYFSRDDTGETNLLVAVYVDDLV
IAGRREKVDEFKHNISQRFRMKDLDSLSRVLAIEVQRDRPNGSITISQGS
YIHEVLKGYGLTSVEEYPPL*
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mRNA from alignment at H-paniculata_contig1484:245..1057-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1484.2882.1 ID=mRNA_H-paniculata_contig1484.2882.1|Name=mRNA_H-paniculata_contig1484.2882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=813bp|location=Sequence derived from alignment at H-paniculata_contig1484:245..1057- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGATCCAGAGGCGGAAAAATGGCGCGCGGCAATGGAGGAAGAATGGGA GGCGTTGGTGAAAAATGGAACATGGGAAAGCGAAGACCTGGGGAGGTTAC CGGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACGG AAGGAGGACGGCAACATGGCACGCTACAAAGCGCGACTGTTGGCTCAAGG CTTTTCACAGGTGGAGGGCGAAGATTTCTTTGAAACCAGTGCCCCCGTAG CTCGCATGTCAACGTTACGTACTGTTTTTAGCGTGGCCGCCGAACATGAT TTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGCACGCCCCGGT AGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCC TAGACGTACCGTTTGTGCGTCGCCTGCGTAAAAGCCTGTATGGCCTCAAG CAGAGCGGTCGAAACTGGAATAACACTCTTGACAATTTTCTTGTTGGGAT AGGACTCAACCGTTCTACTACCCATCCATGCTTGTATTTTTCTCGCGACG ATACGGGAGAAACAAACCTTCTGGTGGCCGTGTATGTTGACGACCTGGTC ATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCA GCGTTTTAGAATGAAAGACTTGGACTCTCTCTCGCGCGTGTTGGCAATAG AAGTACAACGTGACCGCCCTAATGGTAGCATAACCATCTCGCAGGGTAGC TACATCCACGAGGTACTAAAAGGATACGGTTTGACGAGTGTCGAGGAGTA CCCACCCCTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1484:245..1057-

>mRNA_H-paniculata_contig1484.2882.1 ID=mRNA_H-paniculata_contig1484.2882.1|Name=mRNA_H-paniculata_contig1484.2882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig1484:245..1057- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGATCCAGAGGCGGAAAAATGGCGCGCGGCAATGGAGGAAGAATGGGA
GGCGTTGGTGAAAAATGGAACATGGGAAAGCGAAGACCTGGGGAGGTTAC
CGGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACGG
AAGGAGGACGGCAACATGGCACGCTACAAAGCGCGACTGTTGGCTCAAGG
CTTTTCACAGGTGGAGGGCGAAGATTTCTTTGAAACCAGTGCCCCCGTAG
CTCGCATGTCAACGTTACGTACTGTTTTTAGCGTGGCCGCCGAACATGAT
TTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGCACGCCCCGGT
AGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCC
TAGACGTACCGTTTGTGCGTCGCCTGCGTAAAAGCCTGTATGGCCTCAAG
CAGAGCGGTCGAAACTGGAATAACACTCTTGACAATTTTCTTGTTGGGAT
AGGACTCAACCGTTCTACTACCCATCCATGCTTGTATTTTTCTCGCGACG
ATACGGGAGAAACAAACCTTCTGGTGGCCGTGTATGTTGACGACCTGGTC
ATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCA
GCGTTTTAGAATGAAAGACTTGGACTCTCTCTCGCGCGTGTTGGCAATAG
AAGTACAACGTGACCGCCCTAATGGTAGCATAACCATCTCGCAGGGTAGC
TACATCCACGAGGTACTAAAAGGATACGGTTTGACGAGTGTCGAGGAGTA
CCCACCCCTGTAGAAGGATCCAGAGGCGGAAAAATGGCGCGCGGCAATGG
AGGAAGAATGGGAGGCGTTGGTGAAAAATGGAACATGGGAAAGCGAAGAC
CTGGGGAGGTTACCGGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTT
CAAGCGGAAACGGAAGGAGGACGGCAACATGGCACGCTACAAAGCGCGAC
TGTTGGCTCAAGGCTTTTCACAGGTGGAGGGCGAAGATTTCTTTGAAACC
AGTGCCCCCGTAGCTCGCATGTCAACGTTACGTACTGTTTTTAGCGTGGC
CGCCGAACATGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATT
TGCACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTT
TCCCCTTTCTCCCTAGACGTACCGTTTGTGCGTCGCCTGCGTAAAAGCCT
GTATGGCCTCAAGCAGAGCGGTCGAAACTGGAATAACACTCTTGACAATT
TTCTTGTTGGGATAGGACTCAACCGTTCTACTACCCATCCATGCTTGTAT
TTTTCTCGCGACGATACGGGAGAAACAAACCTTCTGGTGGCCGTGTATGT
TGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTCAAGC
ATAACATAAGTCAGCGTTTTAGAATGAAAGACTTGGACTCTCTCTCGCGC
GTGTTGGCAATAGAAGTACAACGTGACCGCCCTAATGGTAGCATAACCAT
CTCGCAGGGTAGCTACATCCACGAGGTACTAAAAGGATACGGTTTGACGA
GTGTCGAGGAGTACCCACCCCTGTAG
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