mRNA_H-paniculata_contig14837.2880.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14837.2880.1
Unique NamemRNA_H-paniculata_contig14837.2880.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14837.2880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14837contigH-paniculata_contig14837:785..3038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2254
Cds size2235
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.529706-UTR-H-paniculata_contig14837:784..8031622929180.529706-UTR-H-paniculata_contig14837:784..803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14837 785..803 +
1691480762.4179032-UTR-H-paniculata_contig14837:784..8031691480762.4179032-UTR-H-paniculata_contig14837:784..803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14837 785..803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.547027-CDS-H-paniculata_contig14837:803..30381622929180.547027-CDS-H-paniculata_contig14837:803..3038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14837 804..3038 +
1691480762.4284382-CDS-H-paniculata_contig14837:803..30381691480762.4284382-CDS-H-paniculata_contig14837:803..3038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14837 804..3038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14837.2880.1prot_H-paniculata_contig14837.2880.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14837 804..3038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14837.2880.1

>prot_H-paniculata_contig14837.2880.1 ID=prot_H-paniculata_contig14837.2880.1|Name=mRNA_H-paniculata_contig14837.2880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=745bp
MSLLLSIANAAAEAVPGLTRYPLRSGGGGGGTQSVSGSSRSRGWRERRQS
FGLSSVSGSAGTGRSNALSSTPPLGGGEVYRLSWYRRPLRSLSPRMPLSL
SAVSGGDPLTFSRRPRTCFPPVSGSVGGSVGGSVSVGGDDSDDRSAAWLT
PTLTPTKEERVGDGVALEAAAAAAAVAATTMGYLRISRPSTPPTFRDRSP
DPQHGVNRRMVAGPMSLTVEAASTPDPPTPPRSRRLAKGGGGGGGAGVPS
PSLHAAKVVVRRVNGEVLPGPPTVDAPTAPTLERIHRHTDDDDDDDDDHG
DVGGADGDDYSDGVSNAHVGISVSPDGDSPQGGEDDGVEVSPWDTVRELK
AEVERLKREMANMAAAAAVAAVNTPGATGPVQPGAVNYVSGGGCVDAPKS
PRAQPTGLIPWQWTPAENGLSATGGGSARARAPSTSSAAAAAAAVANATR
PKSVRLRADDSWMQRRFSRESDGANNAEGVLRVRRKSMLPQSPASSSQDG
EGYATVGTPSVGRKSSSSSGSSSSSNLINNDDESGGTPSQLAALSPPARA
RRGSLGVGPSPASGEKTIGGLKGDGDTTVATITTAATTTAAAAPAAAAPS
STILLDADEERDAAGRARAADAAGSASHQSENDSGHRDITVRPFPVFFPP
GGVADNESEEAAAAVAEAEAAAEAGPVGGEEESTEAGGEATEATDTATLT
AELKKAAAAVVASTGAGAAAAAAAAAAGADGSSSGEGCGIGGGEG
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mRNA from alignment at H-paniculata_contig14837:785..3038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14837.2880.1 ID=mRNA_H-paniculata_contig14837.2880.1|Name=mRNA_H-paniculata_contig14837.2880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2254bp|location=Sequence derived from alignment at H-paniculata_contig14837:785..3038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCAGGAGTCACCAGCGATGTCGCTGTTGCTCTCCATCGCAAATGCTG
CTGCCGAAGCCGTGCCAGGACTCACGCGCTACCCTCTCCGCAGCGGGGGT
GGGGGAGGAGGTACCCAGAGCGTGTCGGGGTCATCTCGAAGTCGAGGCTG
GCGAGAGCGGCGACAGTCATTCGGTTTGTCGTCGGTGTCCGGGTCCGCCG
GGACCGGTAGAAGCAACGCTCTCTCGTCAACCCCTCCTTTGGGCGGTGGA
GAGGTTTATCGTCTGTCGTGGTACCGGAGGCCGTTGCGGTCGTTGTCGCC
GCGTATGCCTCTCTCTCTTTCAGCTGTCAGCGGCGGCGACCCGTTGACCT
TCTCGCGGCGCCCTCGCACATGCTTCCCGCCCGTCAGCGGCAGCGTCGGT
GGCAGTGTCGGCGGCAGCGTCAGCGTCGGCGGGGATGATTCGGACGATCG
CAGCGCCGCTTGGTTAACACCGACGCTTACTCCCACGAAGGAAGAGAGGG
TAGGGGACGGGGTGGCGCTCGAGGCGGCGGCGGCAGCGGCAGCGGTGGCG
GCGACGACGATGGGATATCTCCGTATTTCTAGACCCTCCACGCCGCCTAC
TTTCCGCGACAGATCTCCGGATCCTCAGCATGGCGTGAACAGACGGATGG
TCGCCGGTCCGATGTCCCTAACCGTGGAGGCGGCGTCGACGCCGGATCCG
CCGACGCCACCGCGTTCGAGAAGGCTCGCCAAGGGAGGAGGAGGGGGAGG
GGGAGCAGGCGTACCGTCGCCCTCGCTGCATGCGGCGAAAGTAGTGGTAA
GGAGGGTAAACGGGGAGGTTTTGCCCGGGCCACCAACCGTAGATGCGCCG
ACGGCGCCCACGCTGGAAAGAATTCATCGGCACACGGACGACGACGATGA
CGACGATGATGATCATGGTGATGTCGGTGGTGCTGACGGTGACGACTACA
GCGATGGCGTGAGCAATGCCCACGTCGGCATCTCCGTTTCTCCCGATGGA
GATTCGCCTCAGGGTGGCGAGGACGACGGCGTCGAAGTCAGCCCATGGGA
CACGGTCCGGGAGCTGAAGGCGGAGGTGGAGCGTTTGAAACGCGAGATGG
CAAACATGGCCGCCGCCGCTGCCGTCGCCGCCGTCAACACGCCGGGTGCT
ACGGGTCCGGTACAACCCGGAGCAGTCAACTACGTCAGTGGCGGCGGCTG
CGTCGATGCTCCGAAGTCGCCCCGCGCGCAACCGACGGGTTTGATTCCCT
GGCAATGGACCCCTGCCGAGAATGGCTTGAGTGCCACTGGCGGCGGCTCG
GCGAGAGCCCGCGCGCCCAGCACCTCCTCCGCAGCCGCCGCCGCAGCCGC
TGTCGCTAACGCAACGCGACCGAAGTCGGTCCGCCTACGCGCAGATGACT
CTTGGATGCAGCGGCGGTTCAGCAGGGAGTCGGACGGTGCGAACAACGCT
GAAGGCGTCTTGAGGGTTAGACGAAAGAGCATGTTACCGCAGAGCCCGGC
CAGCAGCTCCCAAGACGGCGAGGGCTACGCCACCGTCGGCACGCCATCGG
TCGGCCGTAAAAGTAGCAGCAGTAGCGGAAGCAGTAGCAGCAGCAACCTC
ATCAACAATGACGACGAAAGCGGCGGGACTCCATCACAGTTGGCAGCACT
GTCGCCGCCGGCTCGCGCCCGCCGGGGTAGCTTGGGCGTCGGCCCTTCTC
CGGCGTCGGGAGAAAAGACGATTGGCGGATTAAAAGGCGATGGTGACACC
ACCGTCGCGACCATCACCACCGCGGCCACCACCACCGCCGCCGCCGCCCC
CGCCGCCGCCGCCCCTAGCTCCACGATCCTTCTAGACGCTGACGAGGAGC
GAGACGCCGCTGGGAGAGCGCGAGCGGCCGACGCAGCCGGCAGTGCTTCC
CACCAAAGCGAAAACGACAGCGGCCACCGCGACATCACCGTCCGTCCGTT
CCCGGTTTTCTTTCCCCCCGGAGGGGTAGCAGACAACGAGTCTGAGGAGG
CGGCTGCGGCGGTTGCGGAAGCAGAAGCAGCGGCGGAAGCAGGACCAGTA
GGAGGAGAAGAAGAGAGCACAGAGGCAGGAGGCGAGGCCACGGAGGCGAC
GGACACGGCCACGTTAACGGCCGAGTTGAAGAAGGCGGCCGCGGCTGTAG
TGGCAAGCACGGGAGCCGGGGCGGCGGCTGCGGCAGCGGCGGCGGCGGCC
GGAGCAGATGGCTCGTCCTCGGGGGAAGGGTGTGGAATCGGCGGAGGAGA
AGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14837:785..3038+

>mRNA_H-paniculata_contig14837.2880.1 ID=mRNA_H-paniculata_contig14837.2880.1|Name=mRNA_H-paniculata_contig14837.2880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4470bp|location=Sequence derived from alignment at H-paniculata_contig14837:785..3038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCTGTTGCTCTCCATCGCAAATGCTGCTGCCGAAGCCGTGCCAGG
ACTCACGCGCTACCCTCTCCGCAGCGGGGGTGGGGGAGGAGGTACCCAGA
GCGTGTCGGGGTCATCTCGAAGTCGAGGCTGGCGAGAGCGGCGACAGTCA
TTCGGTTTGTCGTCGGTGTCCGGGTCCGCCGGGACCGGTAGAAGCAACGC
TCTCTCGTCAACCCCTCCTTTGGGCGGTGGAGAGGTTTATCGTCTGTCGT
GGTACCGGAGGCCGTTGCGGTCGTTGTCGCCGCGTATGCCTCTCTCTCTT
TCAGCTGTCAGCGGCGGCGACCCGTTGACCTTCTCGCGGCGCCCTCGCAC
ATGCTTCCCGCCCGTCAGCGGCAGCGTCGGTGGCAGTGTCGGCGGCAGCG
TCAGCGTCGGCGGGGATGATTCGGACGATCGCAGCGCCGCTTGGTTAACA
CCGACGCTTACTCCCACGAAGGAAGAGAGGGTAGGGGACGGGGTGGCGCT
CGAGGCGGCGGCGGCAGCGGCAGCGGTGGCGGCGACGACGATGGGATATC
TCCGTATTTCTAGACCCTCCACGCCGCCTACTTTCCGCGACAGATCTCCG
GATCCTCAGCATGGCGTGAACAGACGGATGGTCGCCGGTCCGATGTCCCT
AACCGTGGAGGCGGCGTCGACGCCGGATCCGCCGACGCCACCGCGTTCGA
GAAGGCTCGCCAAGGGAGGAGGAGGGGGAGGGGGAGCAGGCGTACCGTCG
CCCTCGCTGCATGCGGCGAAAGTAGTGGTAAGGAGGGTAAACGGGGAGGT
TTTGCCCGGGCCACCAACCGTAGATGCGCCGACGGCGCCCACGCTGGAAA
GAATTCATCGGCACACGGACGACGACGATGACGACGATGATGATCATGGT
GATGTCGGTGGTGCTGACGGTGACGACTACAGCGATGGCGTGAGCAATGC
CCACGTCGGCATCTCCGTTTCTCCCGATGGAGATTCGCCTCAGGGTGGCG
AGGACGACGGCGTCGAAGTCAGCCCATGGGACACGGTCCGGGAGCTGAAG
GCGGAGGTGGAGCGTTTGAAACGCGAGATGGCAAACATGGCCGCCGCCGC
TGCCGTCGCCGCCGTCAACACGCCGGGTGCTACGGGTCCGGTACAACCCG
GAGCAGTCAACTACGTCAGTGGCGGCGGCTGCGTCGATGCTCCGAAGTCG
CCCCGCGCGCAACCGACGGGTTTGATTCCCTGGCAATGGACCCCTGCCGA
GAATGGCTTGAGTGCCACTGGCGGCGGCTCGGCGAGAGCCCGCGCGCCCA
GCACCTCCTCCGCAGCCGCCGCCGCAGCCGCTGTCGCTAACGCAACGCGA
CCGAAGTCGGTCCGCCTACGCGCAGATGACTCTTGGATGCAGCGGCGGTT
CAGCAGGGAGTCGGACGGTGCGAACAACGCTGAAGGCGTCTTGAGGGTTA
GACGAAAGAGCATGTTACCGCAGAGCCCGGCCAGCAGCTCCCAAGACGGC
GAGGGCTACGCCACCGTCGGCACGCCATCGGTCGGCCGTAAAAGTAGCAG
CAGTAGCGGAAGCAGTAGCAGCAGCAACCTCATCAACAATGACGACGAAA
GCGGCGGGACTCCATCACAGTTGGCAGCACTGTCGCCGCCGGCTCGCGCC
CGCCGGGGTAGCTTGGGCGTCGGCCCTTCTCCGGCGTCGGGAGAAAAGAC
GATTGGCGGATTAAAAGGCGATGGTGACACCACCGTCGCGACCATCACCA
CCGCGGCCACCACCACCGCCGCCGCCGCCCCCGCCGCCGCCGCCCCTAGC
TCCACGATCCTTCTAGACGCTGACGAGGAGCGAGACGCCGCTGGGAGAGC
GCGAGCGGCCGACGCAGCCGGCAGTGCTTCCCACCAAAGCGAAAACGACA
GCGGCCACCGCGACATCACCGTCCGTCCGTTCCCGGTTTTCTTTCCCCCC
GGAGGGGTAGCAGACAACGAGTCTGAGGAGGCGGCTGCGGCGGTTGCGGA
AGCAGAAGCAGCGGCGGAAGCAGGACCAGTAGGAGGAGAAGAAGAGAGCA
CAGAGGCAGGAGGCGAGGCCACGGAGGCGACGGACACGGCCACGTTAACG
GCCGAGTTGAAGAAGGCGGCCGCGGCTGTAGTGGCAAGCACGGGAGCCGG
GGCGGCGGCTGCGGCAGCGGCGGCGGCGGCCGGAGCAGATGGCTCGTCCT
CGGGGGAAGGGTGTGGAATCGGCGGAGGAGAAGGGATGTCGCTGTTGCTC
TCCATCGCAAATGCTGCTGCCGAAGCCGTGCCAGGACTCACGCGCTACCC
TCTCCGCAGCGGGGGTGGGGGAGGAGGTACCCAGAGCGTGTCGGGGTCAT
CTCGAAGTCGAGGCTGGCGAGAGCGGCGACAGTCATTCGGTTTGTCGTCG
GTGTCCGGGTCCGCCGGGACCGGTAGAAGCAACGCTCTCTCGTCAACCCC
TCCTTTGGGCGGTGGAGAGGTTTATCGTCTGTCGTGGTACCGGAGGCCGT
TGCGGTCGTTGTCGCCGCGTATGCCTCTCTCTCTTTCAGCTGTCAGCGGC
GGCGACCCGTTGACCTTCTCGCGGCGCCCTCGCACATGCTTCCCGCCCGT
CAGCGGCAGCGTCGGTGGCAGTGTCGGCGGCAGCGTCAGCGTCGGCGGGG
ATGATTCGGACGATCGCAGCGCCGCTTGGTTAACACCGACGCTTACTCCC
ACGAAGGAAGAGAGGGTAGGGGACGGGGTGGCGCTCGAGGCGGCGGCGGC
AGCGGCAGCGGTGGCGGCGACGACGATGGGATATCTCCGTATTTCTAGAC
CCTCCACGCCGCCTACTTTCCGCGACAGATCTCCGGATCCTCAGCATGGC
GTGAACAGACGGATGGTCGCCGGTCCGATGTCCCTAACCGTGGAGGCGGC
GTCGACGCCGGATCCGCCGACGCCACCGCGTTCGAGAAGGCTCGCCAAGG
GAGGAGGAGGGGGAGGGGGAGCAGGCGTACCGTCGCCCTCGCTGCATGCG
GCGAAAGTAGTGGTAAGGAGGGTAAACGGGGAGGTTTTGCCCGGGCCACC
AACCGTAGATGCGCCGACGGCGCCCACGCTGGAAAGAATTCATCGGCACA
CGGACGACGACGATGACGACGATGATGATCATGGTGATGTCGGTGGTGCT
GACGGTGACGACTACAGCGATGGCGTGAGCAATGCCCACGTCGGCATCTC
CGTTTCTCCCGATGGAGATTCGCCTCAGGGTGGCGAGGACGACGGCGTCG
AAGTCAGCCCATGGGACACGGTCCGGGAGCTGAAGGCGGAGGTGGAGCGT
TTGAAACGCGAGATGGCAAACATGGCCGCCGCCGCTGCCGTCGCCGCCGT
CAACACGCCGGGTGCTACGGGTCCGGTACAACCCGGAGCAGTCAACTACG
TCAGTGGCGGCGGCTGCGTCGATGCTCCGAAGTCGCCCCGCGCGCAACCG
ACGGGTTTGATTCCCTGGCAATGGACCCCTGCCGAGAATGGCTTGAGTGC
CACTGGCGGCGGCTCGGCGAGAGCCCGCGCGCCCAGCACCTCCTCCGCAG
CCGCCGCCGCAGCCGCTGTCGCTAACGCAACGCGACCGAAGTCGGTCCGC
CTACGCGCAGATGACTCTTGGATGCAGCGGCGGTTCAGCAGGGAGTCGGA
CGGTGCGAACAACGCTGAAGGCGTCTTGAGGGTTAGACGAAAGAGCATGT
TACCGCAGAGCCCGGCCAGCAGCTCCCAAGACGGCGAGGGCTACGCCACC
GTCGGCACGCCATCGGTCGGCCGTAAAAGTAGCAGCAGTAGCGGAAGCAG
TAGCAGCAGCAACCTCATCAACAATGACGACGAAAGCGGCGGGACTCCAT
CACAGTTGGCAGCACTGTCGCCGCCGGCTCGCGCCCGCCGGGGTAGCTTG
GGCGTCGGCCCTTCTCCGGCGTCGGGAGAAAAGACGATTGGCGGATTAAA
AGGCGATGGTGACACCACCGTCGCGACCATCACCACCGCGGCCACCACCA
CCGCCGCCGCCGCCCCCGCCGCCGCCGCCCCTAGCTCCACGATCCTTCTA
GACGCTGACGAGGAGCGAGACGCCGCTGGGAGAGCGCGAGCGGCCGACGC
AGCCGGCAGTGCTTCCCACCAAAGCGAAAACGACAGCGGCCACCGCGACA
TCACCGTCCGTCCGTTCCCGGTTTTCTTTCCCCCCGGAGGGGTAGCAGAC
AACGAGTCTGAGGAGGCGGCTGCGGCGGTTGCGGAAGCAGAAGCAGCGGC
GGAAGCAGGACCAGTAGGAGGAGAAGAAGAGAGCACAGAGGCAGGAGGCG
AGGCCACGGAGGCGACGGACACGGCCACGTTAACGGCCGAGTTGAAGAAG
GCGGCCGCGGCTGTAGTGGCAAGCACGGGAGCCGGGGCGGCGGCTGCGGC
AGCGGCGGCGGCGGCCGGAGCAGATGGCTCGTCCTCGGGGGAAGGGTGTG
GAATCGGCGGAGGAGAAGGG
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