prot_H-paniculata_contig1483.2874.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1483.2874.1
Unique Nameprot_H-paniculata_contig1483.2874.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1078
Homology
BLAST of mRNA_H-paniculata_contig1483.2874.1 vs. uniprot
Match: D8LNR4_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR4_ECTSI)

HSP 1 Score: 799 bits (2063), Expect = 7.000e-271
Identity = 551/1152 (47.83%), Postives = 663/1152 (57.55%), Query Frame = 0
Query:    1 MKPSISIDLPGWCTLQRCDSDDDERPQRDGGNPSTLDLDELGDMNRRRIDNSSSSRSAAVLDDMDSDDEGDGDGAIARLFSIGGLKRRRSDSESRSRPQSLSQLETAKIDQAQSARMQRQRQSRQGANASPVFDLQAEAYVDWPCVRCTFINTYDQEVCGGCGGGNVKRERRLRARRKEVERLGRLQSARESRDKSLKAEALKDVLEDS-DSE-------GNGSIAHTSETQGNPGTVNPITISMPVDESKTTLTSPLAEMAPAVWTTCSDKGSQN--SSSGYCFVNIFPPDLLLQCAEFLGDVTTLCRVREVSMAWLFTLDGRESGWRLWRPVFYRLRANGSIHAATDNKGQQRRQLKVYDLGT--PTSASSTGRCPASVGSG--AGVHMVTPSPVTRGSSLSPGRGLKDRTSRELRSPPGSEAGTVGGSPGPRRSSACLVCGLIQRAGFTGKDCEMCASSLMVLPG--APATPRVAYTRVNLSESAGENVVLTSSS----------MVVGSASKVSARCTSAAGSAAHLPVAGVSAGP-------GGC---GNGGDGDGENMGKDGDVDNVDWHFLVKRLAEEKRIASGWGPLRHGWVWLQNALQAMLRRRRGDG--------TSSTSRSNEEHVRLNYTKPGSSCG---GGSSDGKERVS-----------APPSPGRGGDVGLGDLDPTISRLVRKLTSKKWVLLYDSLKTTFTLQAQCIARETAFAVQPVAANEAAMNASGTG--NGLRRANCDDAELEGLRGCIAAWEAYKEWCEEVDMYCELLNEQISAERYRNAGSGCGRGDSTPYVRDTALLSFRHSFVLNVHICSILRAAIARGVSSVHLDS-AVAFEDLRRQVTRSESRSAPTPDFNQVLLEARGATGVTIGAADEIFTDQELIEDSRTIDFSIGKSFSGARAGAAGCLGKRCGGMEKPGYSLGGVFDDTSTGAGLRYDRPV--TLAPKRRGNYYDWFLSKLEGKEAGIIRGYVDLRGKSLVRPDGSVRKAGSVGIEAGAQEDGERLAKAGVKELLDLAGDMIEELDVPDDHLSKDRHTQGAMRRLLLLPFKRWQVIA-----------SEVSEEEPHKLLMAGLSPAPGKEGFHRLRSGAAGRRKK-TPPFSTLGKDAGESWEKFSSFFG 1077
            MKPSISIDLPGWCTL+R    D +  + D    + +D D  G      +D ++S  ++                AIARLFS+GGLKR+RS   S SR Q+    ET       + R  R      G   S   DL+AEAY DWPCVRCTFIN Y ++ CGGCGG N KR+R LR RR+E E+L RLQ+AR  RD+SLK EALKDVLEDS DSE       G G  +HT++         P+    PV  +  + T+     APA   T   K  Q    + G C ++I PPDLLLQCAE+LGD  +LCRVREV + WL  LD RE+G RLWRP+FYRLRA+GSIH ATD  GQQ RQLKVYDLGT  P   SS     ++ G+G  AGV   +PS  TR SS  P   L         S  GS A  V        +S+C+VCGLIQR G++GKDCEMCAS+L+++ G  +PATPR+AYTRVNLS   G     +S +          +V G+ S  S             P    + G        G C   G G  G  E  G  G   +VDWHFLVKRLAEEKRIA+GWG L+HGWVWLQ  LQ MLRRRRG          T++        V L      S  G   G S  G ++              P + GR      G+ DP I+RLVRKL++KKWV+LYDSLK TFTLQA+ IARE   A    AA  AA    G G  +   R     A+LEGLRGC+AAWEAYK+WCEEVDMYCELLNE ISAERYR AG+GCGRGD+TPY+RDTAL+SFRHSF LNV +C++LR AI++G+ +   DS +V    L  +  R E         N     A+ A G     ADE+FTD EL+EDSR IDFS+ +SFSG   G          G        G           LR       ++   R GNYYDWFLSKLEGKEAGIIRG +D RGKS+VR       +G+ G    A +     A A   ELL+  GDM+EELDVPDD LSK+RHTQGAMRRLLLLP KRWQ              ++ +E +P  LLMAGLSPAPGKEGFHRLR GAAGRR+K  PP S+LGKDAG+SWE  S+ FG
Sbjct:    1 MKPSISIDLPGWCTLRR----DPKEVESDEQLLALMD-DVAGSGGTHDLDGNASGENSGNXXXXXXXXXX----AIARLFSVGGLKRKRS---SDSRQQTGDGGETRSSGSGSAGRAGR------GTARS---DLEAEAYADWPCVRCTFINAYTEDACGGCGGANKKRDRLLRERREEAEKLSRLQTARRCRDRSLKEEALKDVLEDSSDSENDDHNRRGEGPASHTTK---------PVEDETPVSTASASETT---SAAPADDNTGRTKTLQQHPGTGGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQNRQLKVYDLGTRPPNRGSSA----SAFGNGLTAGVSTPSPSQKTRLSSGGP-PALAAGKGTPWSSGSGSAAAAV-------VASSCVVCGLIQRDGYSGKDCEMCASALVLVRGRESPATPRLAYTRVNLSGGGGSCSSFSSPTTMRWQQHPGCLVTGAGSSRSPDLRQKGRVGGITPAGATADGAREAERSIGSCNSSGGGAQGLEEEFG--GGARSVDWHFLVKRLAEEKRIANGWGSLQHGWVWLQRELQNMLRRRRGHEQLGPAPSLTAAVPTHPPPQVELAALSSASGVGTRGGASHPGAQQXXXXXXXXXXXXXTPTAAGRA--AADGEPDPRIARLVRKLSTKKWVVLYDSLKATFTLQAEGIAREIVLAAASAAAVAAAREDQGKGIVDACGRRPGASADLEGLRGCVAAWEAYKDWCEEVDMYCELLNEHISAERYRTAGAGCGRGDNTPYIRDTALISFRHSFALNVQVCAMLRTAISKGMPTACTDSFSVTGPPL--EAARYEPGRGGAKQDNPRSDTAKSAAG----DADELFTDLELMEDSRAIDFSV-RSFSGP--GGXXXXXXXXXGSRGASTISGACXXXXXXXXALRAASASRSSVGSSRPGNYYDWFLSKLEGKEAGIIRGDIDARGKSVVRSSPPGEGSGAAGGAGCALQ-----AAATQAELLEAVGDMVEELDVPDDALSKERHTQGAMRRLLLLPVKRWQAXXXXXXXXXXXARNDNAEGDPRNLLMAGLSPAPGKEGFHRLRGGAAGRRRKGAPPMSSLGKDAGKSWEHLSTLFG 1089          
BLAST of mRNA_H-paniculata_contig1483.2874.1 vs. uniprot
Match: A0A835YZ22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ22_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.060e-32
Identity = 107/338 (31.66%), Postives = 148/338 (43.79%), Query Frame = 0
Query:  706 LRGCIAAWEAYKEWCEEVDMYCELLNEQISAERYRNAGSGCGRGDSTPYVRDTALLSFRHSFVLNVHICSILRAAIARGVSSVHLDSAVAFEDLRRQVTR---SESRSAPTPDFNQVLLEARGATGVTIGAADE---IFTDQELIEDSRTIDFSIGKSFSGARAGAAGCLGKRCGGMEKPGYSLGGVFDDTSTGAGLRYDRPVTLAPKRRGNYYDWFLSKLEGKEAGIIRGYVDLRGKSLVRPDGSVRKAGSVGIEAGAQEDGERLAKAGVKELLDLAGDMIEELDVPDDHLSKDRHTQGAMRRLLLLPFKRWQVIASEVS-----EEEPHKLLMAGL 1032
            LRG + AW+AY++WCEEVD            ER              P++RD ALL+FR++FV+NV +C+ + A      +                  R      R+    D     +   GA     G  +E   +FTD EL+ED R ++FS+  S             +R  G E+      G+   TST            A +   +YYDW L ++EG+   I+RG VD RG +     G V+ A S       Q+   RL  A            +EELDVPDD LS DRHTQG+MRR +LLP  RW+    E +      +EP  LLM  +
Sbjct:    7 LRGVLRAWDAYRDWCEEVD------------ER--------------PFIRDAALLAFRNNFVMNVQVCAAVSAVAQHAAAXXXXXXXXXXXXXXXXXXRRMGGRKRACSASDGGSGDMGVGGAAAGDAGTNNEDSMLFTDLELVEDCRALNFSVQHS-------------RRSTGSER------GLKTSTST------------AERHHRHYYDWILERVEGRAEDILRGTVDARGIA-----GGVKLALSTAAPESRQQLLSRLLSA------------VEELDVPDDDLSGDRHTQGSMRRAMLLPLLRWRAAMDECAANRNDNDEPSALLMQDI 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1483.2874.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNR4_ECTSI7.000e-27147.83RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
A0A835YZ22_9STRA5.060e-3231.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 143..162
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 267..328

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1483contigH-paniculata_contig1483:10331..16694 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1483.2874.1mRNA_H-paniculata_contig1483.2874.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1483 10295..16983 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1483.2874.1 ID=prot_H-paniculata_contig1483.2874.1|Name=mRNA_H-paniculata_contig1483.2874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1078bp
MKPSISIDLPGWCTLQRCDSDDDERPQRDGGNPSTLDLDELGDMNRRRID
NSSSSRSAAVLDDMDSDDEGDGDGAIARLFSIGGLKRRRSDSESRSRPQS
LSQLETAKIDQAQSARMQRQRQSRQGANASPVFDLQAEAYVDWPCVRCTF
INTYDQEVCGGCGGGNVKRERRLRARRKEVERLGRLQSARESRDKSLKAE
ALKDVLEDSDSEGNGSIAHTSETQGNPGTVNPITISMPVDESKTTLTSPL
AEMAPAVWTTCSDKGSQNSSSGYCFVNIFPPDLLLQCAEFLGDVTTLCRV
REVSMAWLFTLDGRESGWRLWRPVFYRLRANGSIHAATDNKGQQRRQLKV
YDLGTPTSASSTGRCPASVGSGAGVHMVTPSPVTRGSSLSPGRGLKDRTS
RELRSPPGSEAGTVGGSPGPRRSSACLVCGLIQRAGFTGKDCEMCASSLM
VLPGAPATPRVAYTRVNLSESAGENVVLTSSSMVVGSASKVSARCTSAAG
SAAHLPVAGVSAGPGGCGNGGDGDGENMGKDGDVDNVDWHFLVKRLAEEK
RIASGWGPLRHGWVWLQNALQAMLRRRRGDGTSSTSRSNEEHVRLNYTKP
GSSCGGGSSDGKERVSAPPSPGRGGDVGLGDLDPTISRLVRKLTSKKWVL
LYDSLKTTFTLQAQCIARETAFAVQPVAANEAAMNASGTGNGLRRANCDD
AELEGLRGCIAAWEAYKEWCEEVDMYCELLNEQISAERYRNAGSGCGRGD
STPYVRDTALLSFRHSFVLNVHICSILRAAIARGVSSVHLDSAVAFEDLR
RQVTRSESRSAPTPDFNQVLLEARGATGVTIGAADEIFTDQELIEDSRTI
DFSIGKSFSGARAGAAGCLGKRCGGMEKPGYSLGGVFDDTSTGAGLRYDR
PVTLAPKRRGNYYDWFLSKLEGKEAGIIRGYVDLRGKSLVRPDGSVRKAG
SVGIEAGAQEDGERLAKAGVKELLDLAGDMIEELDVPDDHLSKDRHTQGA
MRRLLLLPFKRWQVIASEVSEEEPHKLLMAGLSPAPGKEGFHRLRSGAAG
RRKKTPPFSTLGKDAGESWEKFSSFFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036047F-box-like_dom_sf