mRNA_H-paniculata_contig1483.2874.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1483.2874.1 vs. uniprot
Match: D8LNR4_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR4_ECTSI) HSP 1 Score: 798 bits (2062), Expect = 3.160e-269 Identity = 551/1152 (47.83%), Postives = 663/1152 (57.55%), Query Frame = 1
Query: 37 MKPSISIDLPGWCTLQRCDSDDDERPQRDGGNPSTLDLDELGDMNRRRIDNSSSSRSAAVLDDMDSDDEGDGDGAIARLFSIGGLKRRRSDSESRSRPQSLSQLETAKIDQAQSARMQRQRQSRQGANASPVFDLQAEAYVDWPCVRCTFINTYDQEVCGGCGGGNVKRERRLRARRKEVERLGRLQSARESRDKSLKAEALKDVLEDS-DSE-------GNGSIAHTSETQGNPGTVNPITISMPVDESKTTLTSPLAEMAPAVWTTCSDKGSQN--SSSGYCFVNIFPPDLLLQCAEFLGDVTTLCRVREVSMAWLFTLDGRESGWRLWRPVFYRLRANGSIHAATDNKGQQRRQLKVYDLGT--PTSASSTGRCPASVGSG--AGVHMVTPSPVTRGSSLSPGRGLKDRTSRELRSPPGSEAGTVGGSPGPRRSSACLVCGLIQRAGFTGKDCEMCASSLMVLPG--APATPRVAYTRVNLSESAGENVVLTSSS----------MVVGSASKVSARCTSAAGSAAHLPVAGVSAGP-------GGC---GNGGDGDGENMGKDGDVDNVDWHFLVKRLAEEKRIASGWGPLRHGWVWLQNALQAMLRRRRGDG--------TSSTSRSNEEHVRLNYTKPGSSCG---GGSSDGKERVS-----------APPSPGRGGDVGLGDLDPTISRLVRKLTSKKWVLLYDSLKTTFTLQAQCIARETAFAVQPVAANEAAMNASGTG--NGLRRANCDDAELEGLRGCIAAWEAYKEWCEEVDMYCELLNEQISAERYRNAGSGCGRGDSTPYVRDTALLSFRHSFVLNVHICSILRAAIARGVSSVHLDS-AVAFEDLRRQVTRSESRSAPTPDFNQVLLEARGATGVTIGAADEIFTDQELIEDSRTIDFSIGKSFSGARAGAAGCLGKRCGGMEKPGYSLGGVFDDTSTGAGLRYDRPV--TLAPKRRGNYYDWFLSKLEGKEAGIIRGYVDLRGKSLVRPDGSVRKAGSVGIEAGAQEDGERLAKAGVKELLDLAGDMIEELDVPDDHLSKDRHTQGAMRRLLLLPFKRWQVIA-----------SEVSEEEPHKLLMAGLSPAPGKEGFHRLRSGAAGRRKK-TPPFSTLGKDAGESWEKFSSFFG 3267
MKPSISIDLPGWCTL+R D + + D + +D D G +D ++S ++ AIARLFS+GGLKR+RS S SR Q+ ET + R R G S DL+AEAY DWPCVRCTFIN Y ++ CGGCGG N KR+R LR RR+E E+L RLQ+AR RD+SLK EALKDVLEDS DSE G G +HT++ P+ PV + + T+ APA T K Q + G C ++I PPDLLLQCAE+LGD +LCRVREV + WL LD RE+G RLWRP+FYRLRA+GSIH ATD GQQ RQLKVYDLGT P SS ++ G+G AGV +PS TR SS P L S GS A V +S+C+VCGLIQR G++GKDCEMCAS+L+++ G +PATPR+AYTRVNLS G +S + +V G+ S S P + G G C G G G E G G +VDWHFLVKRLAEEKRIA+GWG L+HGWVWLQ LQ MLRRRRG T++ V L S G G S G ++ P + GR G+ DP I+RLVRKL++KKWV+LYDSLK TFTLQA+ IARE A AA AA G G + R A+LEGLRGC+AAWEAYK+WCEEVDMYCELLNE ISAERYR AG+GCGRGD+TPY+RDTAL+SFRHSF LNV +C++LR AI++G+ + DS +V L + R E N A+ A G ADE+FTD EL+EDSR IDFS+ +SFSG G G G LR ++ R GNYYDWFLSKLEGKEAGIIRG +D RGKS+VR +G+ G A + A A ELL+ GDM+EELDVPDD LSK+RHTQGAMRRLLLLP KRWQ ++ +E +P LLMAGLSPAPGKEGFHRLR GAAGRR+K PP S+LGKDAG+SWE S+ FG
Sbjct: 1 MKPSISIDLPGWCTLRR----DPKEVESDEQLLALMD-DVAGSGGTHDLDGNASGENSGNXXXXXXXXXX----AIARLFSVGGLKRKRS---SDSRQQTGDGGETRSSGSGSAGRAGR------GTARS---DLEAEAYADWPCVRCTFINAYTEDACGGCGGANKKRDRLLRERREEAEKLSRLQTARRCRDRSLKEEALKDVLEDSSDSENDDHNRRGEGPASHTTK---------PVEDETPVSTASASETT---SAAPADDNTGRTKTLQQHPGTGGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQNRQLKVYDLGTRPPNRGSSA----SAFGNGLTAGVSTPSPSQKTRLSSGGP-PALAAGKGTPWSSGSGSAAAAV-------VASSCVVCGLIQRDGYSGKDCEMCASALVLVRGRESPATPRLAYTRVNLSGGGGSCSSFSSPTTMRWQQHPGCLVTGAGSSRSPDLRQKGRVGGITPAGATADGAREAERSIGSCNSSGGGAQGLEEEFG--GGARSVDWHFLVKRLAEEKRIANGWGSLQHGWVWLQRELQNMLRRRRGHEQLGPAPSLTAAVPTHPPPQVELAALSSASGVGTRGGASHPGAQQXXXXXXXXXXXXXTPTAAGRA--AADGEPDPRIARLVRKLSTKKWVVLYDSLKATFTLQAEGIAREIVLAAASAAAVAAAREDQGKGIVDACGRRPGASADLEGLRGCVAAWEAYKDWCEEVDMYCELLNEHISAERYRTAGAGCGRGDNTPYIRDTALISFRHSFALNVQVCAMLRTAISKGMPTACTDSFSVTGPPL--EAARYEPGRGGAKQDNPRSDTAKSAAG----DADELFTDLELMEDSRAIDFSV-RSFSGP--GGXXXXXXXXXGSRGASTISGACXXXXXXXXALRAASASRSSVGSSRPGNYYDWFLSKLEGKEAGIIRGDIDARGKSVVRSSPPGEGSGAAGGAGCALQ-----AAATQAELLEAVGDMVEELDVPDDALSKERHTQGAMRRLLLLPVKRWQAXXXXXXXXXXXARNDNAEGDPRNLLMAGLSPAPGKEGFHRLRGGAAGRRRKGAPPMSSLGKDAGKSWEHLSTLFG 1089
BLAST of mRNA_H-paniculata_contig1483.2874.1 vs. uniprot
Match: A0A835YZ22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ22_9STRA) HSP 1 Score: 137 bits (346), Expect = 5.710e-32 Identity = 107/338 (31.66%), Postives = 148/338 (43.79%), Query Frame = 1
Query: 2152 LRGCIAAWEAYKEWCEEVDMYCELLNEQISAERYRNAGSGCGRGDSTPYVRDTALLSFRHSFVLNVHICSILRAAIARGVSSVHLDSAVAFEDLRRQVTR---SESRSAPTPDFNQVLLEARGATGVTIGAADE---IFTDQELIEDSRTIDFSIGKSFSGARAGAAGCLGKRCGGMEKPGYSLGGVFDDTSTGAGLRYDRPVTLAPKRRGNYYDWFLSKLEGKEAGIIRGYVDLRGKSLVRPDGSVRKAGSVGIEAGAQEDGERLAKAGVKELLDLAGDMIEELDVPDDHLSKDRHTQGAMRRLLLLPFKRWQVIASEVS-----EEEPHKLLMAGL 3132
LRG + AW+AY++WCEEVD ER P++RD ALL+FR++FV+NV +C+ + A + R R+ D + GA G +E +FTD EL+ED R ++FS+ S +R G E+ G+ TST A + +YYDW L ++EG+ I+RG VD RG + G V+ A S Q+ RL A +EELDVPDD LS DRHTQG+MRR +LLP RW+ E + +EP LLM +
Sbjct: 7 LRGVLRAWDAYRDWCEEVD------------ER--------------PFIRDAALLAFRNNFVMNVQVCAAVSAVAQHAAAXXXXXXXXXXXXXXXXXXRRMGGRKRACSASDGGSGDMGVGGAAAGDAGTNNEDSMLFTDLELVEDCRALNFSVQHS-------------RRSTGSER------GLKTSTST------------AERHHRHYYDWILERVEGRAEDILRGTVDARGIA-----GGVKLALSTAAPESRQQLLSRLLSA------------VEELDVPDDDLSGDRHTQGSMRRAMLLPLLRWRAAMDECAANRNDNDEPSALLMQDI 270 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1483.2874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1483.2874.1 >prot_H-paniculata_contig1483.2874.1 ID=prot_H-paniculata_contig1483.2874.1|Name=mRNA_H-paniculata_contig1483.2874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1078bp MKPSISIDLPGWCTLQRCDSDDDERPQRDGGNPSTLDLDELGDMNRRRIDback to top mRNA from alignment at H-paniculata_contig1483:10295..16983+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1483.2874.1 ID=mRNA_H-paniculata_contig1483.2874.1|Name=mRNA_H-paniculata_contig1483.2874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6689bp|location=Sequence derived from alignment at H-paniculata_contig1483:10295..16983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1483:10295..16983+ >mRNA_H-paniculata_contig1483.2874.1 ID=mRNA_H-paniculata_contig1483.2874.1|Name=mRNA_H-paniculata_contig1483.2874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6468bp|location=Sequence derived from alignment at H-paniculata_contig1483:10295..16983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |