mRNA_H-paniculata_contig14825.2871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14825.2871.1
Unique NamemRNA_H-paniculata_contig14825.2871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: D7G5T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T2_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 2.310e-77
Identity = 113/162 (69.75%), Postives = 129/162 (79.63%), Query Frame = 3 
Query:   36 MAATATSALPTGETEKPPMRVVGRRMSEDIGEMLHSPSTALMTLVDCDHQNDFEKVCEYLSQHAMEVVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPESGDDHGHILIKTFSERACELGISMRREFRVCDESNKLHVREDVCKGGNTMSHLEARVEKKYLA 521
            M  TA +A P  +      R    R   D+GE+L+SPS ALMTLVDCDH NDF  VCEYL+ HA EVVREVHGEGQPRH+GRLTIDNHRVMLNCPPAPE GD HGHIL+KT SER+CELGISM+REFRVCDE +K+HVRED+CKGG+TMSH EA + KK+ A
Sbjct:    1 MGDTAVAAAPVADVVHGEKR---ERAHSDMGELLNSPSAALMTLVDCDHLNDFNAVCEYLAVHAQEVVREVHGEGQPRHQGRLTIDNHRVMLNCPPAPEEGDSHGHILMKTISERSCELGISMKREFRVCDEGDKMHVREDICKGGDTMSHTEAHIPKKFAA 159
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: A0A6H5JQK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK3_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.560e-53
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 3 
Query:  234 VVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPESGDDHGHILIKTFSERACELGISMRREFRVCDESNKLHVREDVCKGGNTMSHLEARVEKKYLA 521
            VVREVHGEGQPRH+GRLTIDNHRVMLNCPPAPE GD HGHIL+KT SER CELGISM+REFRVCDE + +HVRED+CKGG+TMSH EARV KK+ A
Sbjct:   14 VVREVHGEGQPRHQGRLTIDNHRVMLNCPPAPEKGDSHGHILMKTISERTCELGISMKREFRVCDEGDNMHVREDICKGGDTMSHTEARVPKKFAA 109
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: B7GEA5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GEA5_PHATC)

HSP 1 Score: 92.8 bits (229), Expect = 6.470e-20
Identity = 46/118 (38.98%), Postives = 78/118 (66.10%), Query Frame = 3 
Query:  147 STALMTLVDCDHQ---NDFEKVCEYLSQHAMEVVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPESGDDHGHILIKTFSERACELGISMRREFRVCD--------ESNKLHVREDVCK 467
            S++LM LV+ DH+   +DF++V ++L ++  +V+ EVHG        +L +D+ +  LNCPPA ESGD HG++L++T SE+    G++++REF+V D        +++K+ +REDV K
Sbjct:    8 SSSLMELVNIDHEMDWSDFDEVVKFLEENLYKVIAEVHG------FDKLLVDDGKTQLNCPPAAESGDSHGNLLLRTLSEKETSSGLTLKREFKVHDCGVDPDNEDNHKVEIREDVVK 119
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: A0A835YGF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGF9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.140e-15
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 3 
Query:  147 STALMTLVDCDHQNDFEKVCEYLSQHAMEVVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPESGDDHGHILIKTFSERACELG--ISMRREFRVCD--------ESNKLHVREDVCKGGNTMSHLE 494
            ++ LM L    + NDF+ V  +L +H  +V+ EVHG        +L +D+  V LNCPPAPE+GD HG +LI+T SE++ + G  I + REF+V D         ++K+ VR DV +       +E
Sbjct:   11 ASQLMVLTAASNLNDFQDVVTFLKEHLDDVINEVHG------FDKLLVDDGTVSLNCPPAPENGDSHGGLLIRTISEQSPDKGEHIVLSREFKVHDLGKSDSAANAHKVEVRCDVTRSAEEGRKIE 130
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: A0A0L0G6E7_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G6E7_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 3.660e-12
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 3 
Query:   87 PMRVVGRRMS-EDIGEMLHSPSTALMTLVDCDHQNDFEKVCEYLSQHAMEVVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPESGDDHGHILIKTFSERACELGIS-MRREFRV-CDESNKLHVRE 455
            P R+V R+ S  D+ +     S  LM L D  + + FE VC+ +   +  +V+E+H       + +L + N    +  PP PE GDDHG+++++TFSE   E   + M REF V  ++ NK+ VRE
Sbjct:    8 PFRLVRRKSSYTDLAD--DDASCRLMNLCDTANLDSFEAVCDVVKDKSSAIVKEIHA------KNKLLVSNGHTTVFAPPEPEQGDDHGNLVLRTFSESVDESEQTVMTREFMVHLEQGNKVEVRE 125
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: A0A6H5K4G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.890e-11
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 3 
Query:   36 MAATATSALPTGETEKPPMRVVGRRMSEDIGEMLHSPSTALMTLVDCDHQNDFEKVCEYLSQHAMEV 236
            M  TA +A P  +      R    R   D+GE+L+SPS ALMTLVDCDH NDF  VCEYL+ HA EV
Sbjct:    1 MGDTAVAAEPVADIVDGEKR---ERAHSDMGELLNSPSAALMTLVDCDHLNDFNAVCEYLAVHAQEV 64
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: A0A0L0GB43_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GB43_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 4.900e-11
Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3 
Query:  105 RRMSEDIGEM-LHSPSTALMTLVDCDHQ--NDFEKVCEYLSQHAMEVVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPESGDDHGHILIKTFSERACELGISMRREFRVCD-ESNKLHVREDV--CKGGNTMSHLEAR 500
            RR S+ + +M   +  + +M L   + +  ++F++V  YL +H +E++  VH     + + RL  D+    +  PPAPE GD HG +L++TFSE+  +  + + REF+V   ++ K  VR ++   KG   + H E +
Sbjct:    7 RRASDHVCDMGAENTCSKIMQLCAAEEELVDNFDEVTHYLQKHLVEIIGSVHS--MDKDQQRLMADDGITQVVAPPAPEEGDSHGGLLLRTFSEKIKDGHVVLTREFKVHSVDAKKNEVRYELTRAKGPGNVEHTEKK 142
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: A0A0L0G4F8_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G4F8_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 3.330e-9
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:  186 NDFEKVCEYLSQHAMEVVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPESGDDHGHILIKTFSERACELGISMRREFRVCD---ESNKLHVREDVCKGGNTMSHLEAR 500
            ++F++V  YL +H  E++  VH     +   RL  D+    +  PPAPE+GD HG +L+KT+SE+  +  +++ REF+V     + N+L        G   + H+E +
Sbjct:   37 DNFDEVTHYLQKHLNEIIGSVHS--MDKDAQRLMADDGVTQVCAPPAPEAGDSHGGLLLKTYSEKIEDGHVALTREFKVHSVDGKKNELRYVITRANGPGNVEHIERK 142
[Close]
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Match: A0A0L0GCS8_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GCS8_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 6.070e-7
Identity = 39/132 (29.55%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:   75 TEKPPMRVVGRRMS-EDIGEMLHSPSTALMTLVDCD--HQNDFEKVCEYLSQHAMEVVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPESGDDHGHILIKTFSERACELG-ISMRREFRV-CDESNKLHVRE 455
            T   P R+  R+ S  D+ E  +  S+ LMT+   +  + ++FE +C  +  +  ++V+++H       + +L + N +  +  PP  E+ D+HG++L++TFSE   E     M RE  V  ++ NK+ VRE
Sbjct:    7 TSAKPFRLQRRKSSYTDLAE--NDGSSTLMTMCSTNDAYLDNFEGICSVVKDNVGKIVKDIHS------KDKLLVSNGKCTVFAPPESEATDNHGNLLLRTFSEEVNEHDQCVMTREVMVHLEQGNKIEVRE 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14825.2871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G5T2_ECTSI2.310e-7769.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQK3_9PHAE1.560e-5382.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7GEA5_PHATC6.470e-2038.98Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A835YGF9_9STRA1.140e-1537.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0G6E7_9EUKA3.660e-1234.92Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A6H5K4G9_9PHAE2.890e-1153.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0GB43_9EUKA4.900e-1130.43Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A0L0G4F8_9EUKA3.330e-931.48Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A0L0GCS8_9EUKA6.070e-729.55Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14825contigH-paniculata_contig14825:52..4604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue1.4e-60
Seed eggNOG ortholog2880.D7G5T2
Hectar predicted targeting categoryother localisation
EggNOG OGs2EVHW@1,2SXHC@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_008990.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size803
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14825.2871.1prot_H-paniculata_contig14825.2871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14825 151..4569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.328704-UTR-H-paniculata_contig14825:51..1501622929179.328704-UTR-H-paniculata_contig14825:51..150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14825 52..150 -
1691480761.9188278-UTR-H-paniculata_contig14825:51..1501691480761.9188278-UTR-H-paniculata_contig14825:51..150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14825 52..150 -
1622929179.414326-UTR-H-paniculata_contig14825:4569..46041622929179.414326-UTR-H-paniculata_contig14825:4569..4604Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14825 4570..4604 -
1691480761.9612844-UTR-H-paniculata_contig14825:4569..46041691480761.9612844-UTR-H-paniculata_contig14825:4569..4604Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14825 4570..4604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.3410294-CDS-H-paniculata_contig14825:150..4621622929179.3410294-CDS-H-paniculata_contig14825:150..462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14825 151..462 -
1691480761.9300396-CDS-H-paniculata_contig14825:150..4621691480761.9300396-CDS-H-paniculata_contig14825:150..462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14825 151..462 -
1622929179.3568532-CDS-H-paniculata_contig14825:1343..14341622929179.3568532-CDS-H-paniculata_contig14825:1343..1434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14825 1344..1434 -
1691480761.938144-CDS-H-paniculata_contig14825:1343..14341691480761.938144-CDS-H-paniculata_contig14825:1343..1434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14825 1344..1434 -
1622929179.3727229-CDS-H-paniculata_contig14825:2549..26171622929179.3727229-CDS-H-paniculata_contig14825:2549..2617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14825 2550..2617 -
1691480761.9457-CDS-H-paniculata_contig14825:2549..26171691480761.9457-CDS-H-paniculata_contig14825:2549..2617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14825 2550..2617 -
1622929179.3944836-CDS-H-paniculata_contig14825:4371..45691622929179.3944836-CDS-H-paniculata_contig14825:4371..4569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14825 4372..4569 -
1691480761.9531546-CDS-H-paniculata_contig14825:4371..45691691480761.9531546-CDS-H-paniculata_contig14825:4371..4569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14825 4372..4569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14825.2871.1

>prot_H-paniculata_contig14825.2871.1 ID=prot_H-paniculata_contig14825.2871.1|Name=mRNA_H-paniculata_contig14825.2871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
MAATATSALPTGETEKPPMRVVGRRMSEDIGEMLHSPSTALMTLVDCDHQ
NDFEKVCEYLSQHAMEVVREVHGEGQPRHEGRLTIDNHRVMLNCPPAPES
GDDHGHILIKTFSERACELGISMRREFRVCDESNKLHVREDVCKGGNTMS
HLEARVEKKYLAATTTAATITPIAAVAAKAAGEDDGAVAQEETAEPTTAK
NMDAGDDAAEVQEQVVSAPVSS*
back to top

mRNA from alignment at H-paniculata_contig14825:52..4604-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14825.2871.1 ID=mRNA_H-paniculata_contig14825.2871.1|Name=mRNA_H-paniculata_contig14825.2871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4553bp|location=Sequence derived from alignment at H-paniculata_contig14825:52..4604- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAACAGACAGGCCATTGAAGCAGGACTAGAGGAATATGGCTGCGACAGCG
ACCAGCGCATTGCCCACGGGAGAGACCGAAAAGCCGCCCATGAGGGTGGT
CGGTAGGAGGATGTCTGAGGACATCGGAGAGATGCTGCACAGCCCTTCGA
CAGCGTTGATGACGCTCGTGGACTGTGACCACCAGAACGACTTTGAGAAA
GTGTGCGAATATCTGTCGCAGCATGCCATGGAGGTGAGTGAGCGTTGTTT
TTTTCACGTTCCCTAGCGAAATCTGCTTGAGAATAGTCGAGATTTGAGCG
GATGCGGGAGGTGACAATGACAGTTAGGGGTGCGCCTAAGTCCTGAACAA
TGCTGAATAGTGCGATAATTGTGTCGCAAAGACCACGTAATTTTTCGTAA
CGACCACGTATTTATTGCCGGCTTTTTAGAGAGTTTGGGCCAAATAGAAA
AAACAAATAATCGACGTCACCCCAAAAATACACAACATACACAGCCATGG
AGAGACCCAGTGTAAGCTAAAGAAACTAGAAAATGAATAGTCTTGGAAGA
GGCAGGATATTCCAAAAATACGAAAAGACGAACAACCCTGAAGAAGCCAT
CAGAAAGGCTGAGGAGCTACAGACAAAAGAGAGAGACTCCTCCACAGGCG
AGAGCTATCTCCCACGGCCTCCCTCTGAGTGCAACAGCAGTAGCATCTGC
GCACACAGCACGCACGACATCCCACACCAGCCCGAGTAGACCGCATCCAG
TGGTCGGGCGGCACTGGGAAAATGGCCAAGCACAAGCAAGAGCAGTCGCT
CCCGGCCGCTGCTGCGACATGCCAAGATACAGCAGTAAAAGCAGCAGCAG
CGACCGCACCCCCCTACCATCTATGCAACATGCACTGGTTGTCTCCCGCA
TATCCTTGGGATGGAGAGTGAGTGCTTCATGGGGGCACCCTTGGGACGGG
ATCGTGGCATGAGTGGCCGCATCAACATCTTGTAGCGTTGGTTCGTTCTG
TCTGGTACAATAACAGCAGAAGCGACTTCAAATATCGGATGCGCGAAGAA
GCAGAGCTGCTGCTGCTGTATTCACCACGTTGTCCCCTTTTATCATGTAC
TGCGTGCAGCTCACACCTGGACGGTAAAATGGCCGAGCAAAGCTAAGTTT
GAGTTTAAGTTTGGGACGCTGAGAATGTTGGTTACAACAACGAGCTACAA
CCATTGCAATATACAAAGCGAATTGTGCCCCTACGACCACCTAATGTAAC
CCTAACGACCAGATGTGTGAAGAATATTTACGTTCGAAAAGAATGCCCTC
TCCTGCACTCTAAATTCGAGGAGTTTTGGGTGCGTTTTTGGTGTTGATGG
GCCACTTTAGATTCGAGTAGTTTGGGGTACTTGTTTGTGTTGGTAGGCTA
TCTTATGAATAAATACACTCCTCAGCAAGGTCGTCGTTGATTGGGATGCG
ATTTTTTGCATCGTGTGCGCGAAAACTCACCGAGGGAGCTTTCCACACAG
CTCCAGCACTTGTGCTTGCGCACATCGGCTATTTGCCTATTTGCTTGTGA
TTGTGTAACGGTAATCGCTACGTTGGCAGGCATTACACACCGACATGCCG
GCCGTATTTCCACGACTATGGTGTTACACCAGTTGTTCAAAATTCGAATC
CTGTCGGATCTGGGCAAAATGGGTTGGTTTCAGATTCTAACGTTTATTAG
AAGAGTGACACGGTCGAGCTATCGTACCGCCGACGGCAGATGTAACTTGT
AGCATCTATCGACCGAAACCCAACAGAGCAAAATAGGCTACTCTCAGTGA
AGCACCTAGTGCACAACACAGCCGAACTCCTCTTACTCAAGACATGGAAG
AACAAAACAGCTCGACCTATTTATTGGGCCGTTAAACTCACGGGGCTTCA
CGTTTCACTTTTTTTCCATTATAAGGGGACATATTCGTCTTGGGGGGTCC
GTCCTTTGATCGTTTCTTGGTCATCGTGTTCTTGAAGGTGGTGCGAGAGG
TGCACGGAGAAGGGCAGCCGCGGCACGAAGGCCGACTCACTATTGACAAC
CATAGGTGCGTTGGACCAGTGGATAGCAGTAAAGAACATACAGACACAGC
TCAAATCAAATAAATGCATGCATAAATTGCAAATTTAACATGCAGGTATT
GTGACCACCCTCTATTTGATTTTATAGATTACAGCGGTGGATGCAATATA
GGGCGGTGTTGTTGTGACAGTTCAAAAGTGCCCGCCTTAGGGCCCGTTCT
AAACGAGGCTGTTTACTTGGCTTTTTTTTTTTTTTTTTCATTTTCCCGAT
TTTCTCGTTTCCGAACAAGTCGAAATGGTGAGAAAGTTCCCAAAATTGAA
GGAAAGTTCCCGATTCACTCTACGGCACCTTGTCCTTATATTCCTGGTGC
TCTTCAAAGTCAACAAGAGTATGGCGATTTCCAATTTTAGGAAAGTGGAA
AATCGGACAAATAGATGGCCTCGTTTAGAACCGTCCCTGTTGCTAACTCC
TCCTTGTTCTGTCAAACACCTTGGATGAATATGAAGGTTCATGAAGGTCG
TCGCTTTTGTTTTTTTTATATGACCATGACAGTTCGAGAATACGGGGCGC
TTTCCATGTGTCTCATCGAACCGATCGATAGCTGCAGGTCCTCCGCCCTT
TTTTTGAGTGTGTGGTTCTGGAGTATGAGCGCACCCTCGCACATTTTTTT
ACTTTGGAGCATGACGGTTGAGTAAAATATTACAGGAACCATAAAGGTGT
TTTTACTTGGAAGAATAGAAACATTTATCTGAGTATGATTTCCGTTATTA
TGACGCGGGTTGGGCCTTCTACAGGGCGCCTCCCAATGTAAGGCGAAACC
TGCCTCATGTCGGGGATAAGTCATGATGCATACACATGCGATTGAATGTG
CATGATGGTTCAGCCCGACGGATACGGTGTAGACACGAGAATATAGATTT
TTAGTTATATTCTGATGGCCTAAGATACATGGCAGCACCAAAAAGTCTTC
ATGTTGTTGCACCGTGTCGATGGCCCTGCGTTGTATTTCAGCAGCAATGC
TCTGGCTATCGACACCCTTGCGATAGATGGCGCACCTCGGCTTCTCTTCC
CTTCCCTGCCTCTGGCCACCTAGTTGAACTTGTCTTGGCGCTGCGCGTGT
TCTTTTTGTTTTTCGCGCAGAGTGATGCTGAACTGCCCACCTGCCCCTGA
GTCCGGTGACGACCATGGCCACATCCTTATAAAAACCTTTTCGGAGAGGG
CTTGCGAGCTGGTGAGATGAACAGTCAAGCTTGTAACGACCGAATGATGG
ACAGACCCTACACAGCTAGCTAGCTGGCTAAAGGGTCTGAAGAGATTGTC
TGGAATCCTTTTTTTTGTTTACTGTTTGATATGTGGAAGTTGTGCTCGGC
GCGCACCTGACAGGGTGAAATGTGAGCGCATCACTTGTCAGCTCCATGGC
GATACCGTGGAGCCTTTCGGTCATCAGAATCAAAATTGGTGATGAAGAAA
TATTGGTTTCGACACAGGTGTTGGTGTTGGTGTTGGTGACGAGTTTCCAA
GACGAACAAAGGAAACGGTGCTGTATTCAGTGTTCAAAAACATGAAAACG
TGTGCCCGTTTCGGGAAACCCTAAATACAACTCTTCCCCAAGCTCATGGA
CGTAGGCAAGCAGGCCACCTTCACGTGCTCACTCGCTCATCTTTTCGGTT
CGTTTTAAGTTTCCCAAGATTCGTCCAACAGTACCAGTCAGCTCATGACC
TATCTGGGAAAATTCTCCCGTTGAAAGAGTACAGACCGCATGCAAACATT
CTCCACAACTCCGCAACCGACGACGGCCACCATTCTCCAACATCGTCCCG
ACAAGACTTGGATACAGATTGCAAAGTCTGCTCCGGAAAATACGACCATA
AACCGTGAGTCCTCCCACCCCCCCCCCCTCCCCTATTGTTCATAATCTTG
TTTTGTTGATAAAGTGTATACAAGTACAGTTTACAGTCGGCTGCATAACC
TCAATGTGGGTACAAACAGGATTATGACCTGAGCTTCGAAGTTATAGTTC
AACAAGCTGTGACAGGGTTGGGTGACTTATGAAAGAGACTTCCAGTTCGT
AAAATTCAGGGTACAATTTGCCCTCCCCTCCACTGTCCACAGGGTATTTC
TATGAGGCGCGAATTCCGCGTGTGCGACGAAAGCAACAAGCTGCACGTGA
GGGAAGATGTCTGCAAAGGGGGCAACACTATGTCGCACCTGGAGGCTAGG
GTCGAGAAGAAATATCTCGCCGCCACCACCACCGCCGCCACGATTACCCC
TATTGCCGCCGTTGCTGCTAAGGCGGCTGGCGAAGACGACGGCGCAGTAG
CCCAGGAAGAGACCGCTGAACCTACCACTGCGAAAAATATGGATGCGGGT
GACGATGCCGCAGAAGTGCAGGAACAGGTCGTGAGCGCTCCTGTTTCGTC
GTAGTCTATTCGGTGGTATGGGGTCCCACCAAATGCTACAGTTGAGGGAT
GCTGGCGACAATTTGTTAGGCGGAGGGGATAGTAGGATTCTCGGGGGCGG
GGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14825:52..4604-

>mRNA_H-paniculata_contig14825.2871.1 ID=mRNA_H-paniculata_contig14825.2871.1|Name=mRNA_H-paniculata_contig14825.2871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig14825:52..4604- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCGACAGCGACCAGCGCATTGCCCACGGGAGAGACCGAAAAGCC
GCCCATGAGGGTGGTCGGTAGGAGGATGTCTGAGGACATCGGAGAGATGC
TGCACAGCCCTTCGACAGCGTTGATGACGCTCGTGGACTGTGACCACCAG
AACGACTTTGAGAAAGTGTGCGAATATCTGTCGCAGCATGCCATGGAGAT
GGCTGCGACAGCGACCAGCGCATTGCCCACGGGAGAGACCGAAAAGCCGC
CCATGAGGGTGGTCGGTAGGAGGATGTCTGAGGACATCGGAGAGATGCTG
CACAGCCCTTCGACAGCGTTGATGACGCTCGTGGACTGTGACCACCAGAA
CGACTTTGAGAAAGTGTGCGAATATCTGTCGCAGCATGCCATGGAGGTGG
TGCGAGAGGTGCACGGAGAAGGGCAGCCGCGGCACGAAGGCCGACTCACT
ATTGACAACCATAGGTGGTGCGAGAGGTGCACGGAGAAGGGCAGCCGCGG
CACGAAGGCCGACTCACTATTGACAACCATAGAGTGATGCTGAACTGCCC
ACCTGCCCCTGAGTCCGGTGACGACCATGGCCACATCCTTATAAAAACCT
TTTCGGAGAGGGCTTGCGAGCTGAGTGATGCTGAACTGCCCACCTGCCCC
TGAGTCCGGTGACGACCATGGCCACATCCTTATAAAAACCTTTTCGGAGA
GGGCTTGCGAGCTGGGTATTTCTATGAGGCGCGAATTCCGCGTGTGCGAC
GAAAGCAACAAGCTGCACGTGAGGGAAGATGTCTGCAAAGGGGGCAACAC
TATGTCGCACCTGGAGGCTAGGGTCGAGAAGAAATATCTCGCCGCCACCA
CCACCGCCGCCACGATTACCCCTATTGCCGCCGTTGCTGCTAAGGCGGCT
GGCGAAGACGACGGCGCAGTAGCCCAGGAAGAGACCGCTGAACCTACCAC
TGCGAAAAATATGGATGCGGGTGACGATGCCGCAGAAGTGCAGGAACAGG
TCGTGAGCGCTCCTGTTTCGTCGTAGGGTATTTCTATGAGGCGCGAATTC
CGCGTGTGCGACGAAAGCAACAAGCTGCACGTGAGGGAAGATGTCTGCAA
AGGGGGCAACACTATGTCGCACCTGGAGGCTAGGGTCGAGAAGAAATATC
TCGCCGCCACCACCACCGCCGCCACGATTACCCCTATTGCCGCCGTTGCT
GCTAAGGCGGCTGGCGAAGACGACGGCGCAGTAGCCCAGGAAGAGACCGC
TGAACCTACCACTGCGAAAAATATGGATGCGGGTGACGATGCCGCAGAAG
TGCAGGAACAGGTCGTGAGCGCTCCTGTTTCGTCGTAG
back to top