mRNA_H-paniculata_contig14817.2870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14817.2870.1
Unique NamemRNA_H-paniculata_contig14817.2870.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14817.2870.1 vs. uniprot
Match: A0A6H5KN63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN63_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.540e-18
Identity = 68/178 (38.20%), Postives = 88/178 (49.44%), Query Frame = 3 
Query:  516 AVVRTASRTASPQQELGITQRLLLPHFPANLAAKRLARGILIGVPVVGAALSAWLARSDMRRTYQEIAIARSDHARALARASRIKHTHGD-------------LSPTVNTGTVNCFGVATAADSVNVVAHLITAFGLYQGWEPDPIAAAESASLLAAVVSTGAAVGGEYLSARRATRL 1010
            A  +TA  T +P    GI   L     PA  AA R  RG LI +P+VG   SAW   +D RR   E+  A    A A     R     GD               PT++   V  F VA  AD+  +  HL+ A+GL+ GW+PDPI  AE  +L+AAVVSTG  + GEYL+A R  ++
Sbjct:  100 ATAQTAPNTGTPPAAGGIFGNL-----PARTAAARAGRGCLIALPIVGIGFSAWTCVTDYRRVRHELKRACVGLALAEMSFQREAGRKGDSXXXXXXXXXNSATRPTLDASPVRSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRMRQI 272
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BLAST of mRNA_H-paniculata_contig14817.2870.1 vs. uniprot
Match: D7FNY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.760e-18
Identity = 66/172 (38.37%), Postives = 84/172 (48.84%), Query Frame = 3 
Query:  516 AVVRTASRTASPQQELGITQRLLLPHFPANLAAKRLARGILIGVPVVGAALSAWLARSDMRRTYQEIAIARSDHARALARASRIKHTHGD-----------LSPTVNTGTVNCFGVATAADSVNVVAHLITAFGLYQGWEPDPIAAAESASLLAAVVSTGAAVGGEYLSARR 998
            A  + A  T +P    GI   L     PA  AA R  RG LI +P+ G   SAW   +D RR   E+ +AR   A A     R     GD             PT +      F VA  AD+  +  HL+ A+GL+ GW+PDPI  AE  +L+AAVVSTG  + GEYL+A R
Sbjct:   74 ATAQRAPNTGTPPAAGGIFGNL-----PARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGDGGXXXXDANSATRPTFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANR 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14817.2870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN63_9PHAE2.540e-1838.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNY0_ECTSI5.760e-1838.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14817contigH-paniculata_contig14817:2074..3822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_004760.1
Exons2
Model size1357
Cds size957
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14817.2870.1prot_H-paniculata_contig14817.2870.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14817 2367..3715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.2478008-UTR-H-paniculata_contig14817:2073..23661622929179.2478008-UTR-H-paniculata_contig14817:2073..2366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14817 2074..2366 -
1691480761.8828607-UTR-H-paniculata_contig14817:2073..23661691480761.8828607-UTR-H-paniculata_contig14817:2073..2366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14817 2074..2366 -
1622929179.2858436-UTR-H-paniculata_contig14817:3715..38221622929179.2858436-UTR-H-paniculata_contig14817:3715..3822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14817 3716..3822 -
1691480761.9076662-UTR-H-paniculata_contig14817:3715..38221691480761.9076662-UTR-H-paniculata_contig14817:3715..3822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14817 3716..3822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.259655-CDS-H-paniculata_contig14817:2366..27201622929179.259655-CDS-H-paniculata_contig14817:2366..2720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14817 2367..2720 -
1691480761.8915198-CDS-H-paniculata_contig14817:2366..27201691480761.8915198-CDS-H-paniculata_contig14817:2366..2720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14817 2367..2720 -
1622929179.2711797-CDS-H-paniculata_contig14817:3112..37151622929179.2711797-CDS-H-paniculata_contig14817:3112..3715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14817 3113..3715 -
1691480761.8991568-CDS-H-paniculata_contig14817:3112..37151691480761.8991568-CDS-H-paniculata_contig14817:3112..3715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14817 3113..3715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14817.2870.1

>prot_H-paniculata_contig14817.2870.1 ID=prot_H-paniculata_contig14817.2870.1|Name=mRNA_H-paniculata_contig14817.2870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp
MSHTLRCRPCYSVLRDNHRTIGGRLQVLVATTRTSTSSTTGGANNNNNGD
KNAIKATSSSKSNRKPSRTAAKLPGLHAAEQKQVVKRTQETTGMKITERV
AERVAETAAERTVAKAAASKALAAAGGQEARSIGKHAVVRTASRTASPQQ
ELGITQRLLLPHFPANLAAKRLARGILIGVPVVGAALSAWLARSDMRRTY
QEIAIARSDHARALARASRIKHTHGDLSPTVNTGTVNCFGVATAADSVNV
VAHLITAFGLYQGWEPDPIAAAESASLLAAVVSTGAAVGGEYLSARRATR
LEMEAEAGDDECRKGQSK*
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mRNA from alignment at H-paniculata_contig14817:2074..3822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14817.2870.1 ID=mRNA_H-paniculata_contig14817.2870.1|Name=mRNA_H-paniculata_contig14817.2870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1749bp|location=Sequence derived from alignment at H-paniculata_contig14817:2074..3822- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGATAGACAGCTATTAGTGTAGTTAGCTCACGCTGTACTTCAAAGAC
AGGACACCAACCATAAGACGGATGCAGCACTGTCGTGCTTAGAAGAAAAT
AGAGAAAATGAGCCATACACTTCGTTGCAGACCATGCTACTCGGTGCTTC
GAGATAATCACCGCACTATTGGCGGCCGTCTACAAGTGCTAGTAGCCACG
ACCAGAACTTCAACAAGTTCCACCACCGGAGGTGCGAACAACAATAACAA
CGGCGACAAAAACGCAATCAAAGCCACCAGCAGCAGTAAAAGTAATCGTA
AACCTAGTCGTACTGCCGCAAAACTGCCAGGCTTACATGCTGCTGAACAA
AAGCAGGTGGTAAAAAGGACGCAAGAGACCACCGGCATGAAGATTACGGA
GAGGGTGGCTGAAAGAGTTGCCGAAACCGCTGCTGAGCGAACTGTCGCAA
AAGCGGCAGCTTCGAAAGCGCTTGCTGCGGCAGGAGGGCAGGAAGCGAGA
TCAATAGGCAAACATGCGGTGGTGAGGACTGCATCACGAACAGCAAGCCC
GCAACAAGAATTGGGCATAACGCAACGTTTACTTTTGCCGCATTTCCCCG
CAAACTTAGCAGCCAAACGCCTCGCCCGCGGAATCCTCATCGGGGTGCCC
GTCGTCGGCGCAGCGCTTTCGGCCTGGCTTGCACGGTCGGACATGCGCAG
GACGTACCAGGTGCGACTTTCCTGAGCTTTCGTACTGATTGTGTTTCTCG
CTCCTTGTTCCCCTTGCGGCTCTTTCACATCGTGGTAATAATACCTCCCG
ATAAGTAAGACTTCGGGACGATCCTCTCGCGTCACGACCGTCAAGCATAC
CATGTACTTTCACATCAATACCAGTGTAGGTAGTACTTAAACAACGGTTC
AAGTGGCAGATATGGTATGTCTTAAGTTCCTGTGTGTATGTGTGTTTCGT
CGCGAGTCAGTCCATCTATCGAAATCTACGGTCTGAAGCTGAGAGTGTAG
TGCCCCGACCCATTCCTTATTTTCGTGTATGGGCATGAGCTGAGTATATA
TTTCCATCTGAACGCTGCCGTTTCCCCGTTTTTCGTTGTTTCTTTGGATT
AGGAGATAGCCATCGCTCGCTCCGACCACGCTCGCGCTCTCGCTCGCGCT
TCCCGGATCAAACACACGCATGGAGACTTATCTCCGACAGTAAACACTGG
CACGGTTAACTGCTTCGGCGTTGCGACAGCGGCTGACTCGGTCAACGTTG
TCGCGCACTTGATCACAGCGTTTGGCTTGTACCAGGGCTGGGAGCCGGAT
CCAATTGCGGCCGCAGAGAGTGCGAGTCTGTTGGCGGCCGTGGTTTCGAC
GGGTGCTGCCGTCGGGGGAGAGTATTTGAGCGCCCGTCGCGCAACGAGAT
TAGAAATGGAAGCGGAAGCGGGAGACGATGAATGTCGGAAGGGCCAAAGC
AAATGAGACCAGCTGCCGGGGGTGACGCGGGCGACGGAAAAGAAAACACG
ATGATGGTGTAGTGTAGAGCTGTTAGTTTTGGATTTGGAACAGCGTGTAT
GGCCCTTACATCAACAGGCATTCCGCGTTCCTCGGAGGGTAGGCAGCGCT
CTGGTATCATAAGAAGTGGCGCGCGGTCCGCCCCCAGCTTTGCACCACGT
GGTATCAATGGATACGATACATTTTTTTTTATTCAGTGTCATCTCCTTTT
TTTTTACCTCCCACCGAGCACGCGGCTGCTGTTGTTTAAAGCGACACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14817:2074..3822-

>mRNA_H-paniculata_contig14817.2870.1 ID=mRNA_H-paniculata_contig14817.2870.1|Name=mRNA_H-paniculata_contig14817.2870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig14817:2074..3822- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCATACACTTCGTTGCAGACCATGCTACTCGGTGCTTCGAGATAA
TCACCGCACTATTGGCGGCCGTCTACAAGTGCTAGTAGCCACGACCAGAA
CTTCAACAAGTTCCACCACCGGAGGTGCGAACAACAATAACAACGGCGAC
AAAAACGCAATCAAAGCCACCAGCAGCAGTAAAAGTAATCGTAAACCTAG
TCGTACTGCCGCAAAACTGCCAGGCTTACATGCTGCTGAACAAAAGCAGG
TGGTAAAAAGGACGCAAGAGACCACCGGCATGAAGATTACGGAGAGGGTG
GCTGAAAGAGTTGCCGAAACCGCTGCTGAGCGAACTGTCGCAAAAGCGGC
AGCTTCGAAAGCGCTTGCTGCGGCAGGAGGGCAGGAAGCGAGATCAATAG
GCAAACATGCGGTGGTGAGGACTGCATCACGAACAGCAAGCCCGCAACAA
GAATTGGGCATAACGCAACGTTTACTTTTGCCGCATTTCCCCGCAAACTT
AGCAGCCAAACGCCTCGCCCGCGGAATCCTCATCGGGGTGCCCGTCGTCG
GCGCAGCGCTTTCGGCCTGGCTTGCACGGTCGGACATGCGCAGGACGTAC
CAGATGAGCCATACACTTCGTTGCAGACCATGCTACTCGGTGCTTCGAGA
TAATCACCGCACTATTGGCGGCCGTCTACAAGTGCTAGTAGCCACGACCA
GAACTTCAACAAGTTCCACCACCGGAGGTGCGAACAACAATAACAACGGC
GACAAAAACGCAATCAAAGCCACCAGCAGCAGTAAAAGTAATCGTAAACC
TAGTCGTACTGCCGCAAAACTGCCAGGCTTACATGCTGCTGAACAAAAGC
AGGTGGTAAAAAGGACGCAAGAGACCACCGGCATGAAGATTACGGAGAGG
GTGGCTGAAAGAGTTGCCGAAACCGCTGCTGAGCGAACTGTCGCAAAAGC
GGCAGCTTCGAAAGCGCTTGCTGCGGCAGGAGGGCAGGAAGCGAGATCAA
TAGGCAAACATGCGGTGGTGAGGACTGCATCACGAACAGCAAGCCCGCAA
CAAGAATTGGGCATAACGCAACGTTTACTTTTGCCGCATTTCCCCGCAAA
CTTAGCAGCCAAACGCCTCGCCCGCGGAATCCTCATCGGGGTGCCCGTCG
TCGGCGCAGCGCTTTCGGCCTGGCTTGCACGGTCGGACATGCGCAGGACG
TACCAGGAGATAGCCATCGCTCGCTCCGACCACGCTCGCGCTCTCGCTCG
CGCTTCCCGGATCAAACACACGCATGGAGACTTATCTCCGACAGTAAACA
CTGGCACGGTTAACTGCTTCGGCGTTGCGACAGCGGCTGACTCGGTCAAC
GTTGTCGCGCACTTGATCACAGCGTTTGGCTTGTACCAGGGCTGGGAGCC
GGATCCAATTGCGGCCGCAGAGAGTGCGAGTCTGTTGGCGGCCGTGGTTT
CGACGGGTGCTGCCGTCGGGGGAGAGTATTTGAGCGCCCGTCGCGCAACG
AGATTAGAAATGGAAGCGGAAGCGGGAGACGATGAATGTCGGAAGGGCCA
AAGCAAATGAGAGATAGCCATCGCTCGCTCCGACCACGCTCGCGCTCTCG
CTCGCGCTTCCCGGATCAAACACACGCATGGAGACTTATCTCCGACAGTA
AACACTGGCACGGTTAACTGCTTCGGCGTTGCGACAGCGGCTGACTCGGT
CAACGTTGTCGCGCACTTGATCACAGCGTTTGGCTTGTACCAGGGCTGGG
AGCCGGATCCAATTGCGGCCGCAGAGAGTGCGAGTCTGTTGGCGGCCGTG
GTTTCGACGGGTGCTGCCGTCGGGGGAGAGTATTTGAGCGCCCGTCGCGC
AACGAGATTAGAAATGGAAGCGGAAGCGGGAGACGATGAATGTCGGAAGG
GCCAAAGCAAATGA
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