mRNA_H-paniculata_contig14801.2863.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A2P4WXA7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXA7_9STRA) HSP 1 Score: 124 bits (312), Expect = 6.180e-30 Identity = 62/169 (36.69%), Postives = 92/169 (54.44%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFV-----DNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGTVERVMRKVFRALQAMLAE 504 W+ A +L +R+ +V G A H TL + +W+ + D K F+ + L+ A+ G PRPL + E+ E++H+D+L +G+S YVLV +DD S +V D HFKN V+ ALG +HF+ A W NGTVE VMR+V R +A+L+E Sbjct: 1086 WLPADASELQLRICIVGHFGAAGHRTAEVTLKNIASVFVWSDLVSDVKQFVARCLHCASVSGGPPFPRPLGEALHAERPNELLHWDYLSMGDSTKGEKYVLVLKDDASNYVWLWVSDQGTHFKNAVIQALQRALGAHHHFTTARCPWANGTVEVVMREVLRCCRALLSE 1254
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.870e-25 Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASA----------YVLVTEDDLSGF 342 W+ +A + +RL++ A M EA H GV T+ RLR YC W+TM+ D K+F++Q L+ + K+G VPRP TV G++ GEV+HFD+LH+G+S A Y+LV DDLS F Sbjct: 406 WIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNF 525
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 110 bits (276), Expect = 4.280e-25 Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASA----------YVLVTEDDLSGF 342 W+ +A + +RL++ A M EA H GV T+ RLR YC W+TM+ D K+F++Q L+ + K+G VPRP TV G++ GEV+HFD+LH+G+S A Y+LV DDLS F Sbjct: 1182 WIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNF 1301
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A225VTN3_9STRA (Gag-pol Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VTN3_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.020e-16 Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 139 MEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFV-DNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGTVERVMRKVFR 480 M D F+++ L+ A+ G PR L + E E++H+DFL++GES+ AYVLVT +V D HFKN+V+ A+G +HF+ A W NGTVE V R+V R Sbjct: 1 MARDVDFFVQRCLHCASTLGGPPQPRLLGEAMHAEHPKELLHWDFLYMGESDTNQAYVLVTHPMCRSWVSDQGTHFKNKVIEALQHAIGGHHHFTTARCPWANGTVEVVNREVLR 115
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A225W2P9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W2P9_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.030e-15 Identity = 57/187 (30.48%), Postives = 85/187 (45.45%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFVD------------------------NAAHFKNRVLGK-TALALGIQYHFSVAHSAWKNGTVERVMRKVFRALQAML 498 W+ +A L R++VVA G H G L L+ T +E+ F RQ L ++K +PRP + + + EVVH+DFL +GE S+Y+LV +D LS F + + K R G A L ++ FS +S W NGTVER+ + V + +A+L Sbjct: 892 WIPSNAKDLIARIVVVANCGSQGHRGQEPMLLALKERFYITKLEDKVAKFFRQCLPRKHFKGPRQIPRPDGQLLQANERNEVVHWDFLSLGEGFCDSSYLLVVQDGLSHFCEFFPCATPMAYAAAEALTLWYGCQRHCGRTKARTSGTHQAARLKMELSFSPVYSPWLNGTVERLNKDVLQVFRALL 1078
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A225UPK1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UPK1_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 3.110e-15 Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFVDNAAHFKNR 372 W+ A +L +R+ VV G A H GV TT++++ +W M +D + F+ L+ A+ G PR L + E+ E++H+D+L +G+SE YVLV +DD S + +H K+R Sbjct: 148 WIPDDAAELQMRVSVVGHFGIAGHRGVATTVEKICGQSVWKGMNKDIELFVNPCLHCASSVGGPPQPRLLGEAMHAERPNELIHWDYLFMGDSETKDCYVLVIKDDASS-LSGCSHAKSR 266
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A2P4XBD9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBD9_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.330e-15 Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFVDNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGTVERVMRKVFRALQAMLAE 504 WV L R+L+VA H G+ + + + + + F+ + L + K G +PRP T +K E++HFDFL++G+S A+ + +S D +HFKN ++ L I VA++ W NGTVER+ R V + L+ +L E Sbjct: 414 WVPEMEVALLQRILIVAHCETQGHRGIEPMMTTMTAIFEIANLTQVCRRFLSKCLLCKHVKGGNIIPRPWGPTYDAKKRNELLHFDFLYLGDSMGATETIWCPSILIS---DQGSHFKNELITMVCKKLAIDQSLVVAYAPWINGTVERLNRDVLQVLRVLLME 574
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A2P4XB16_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XB16_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.640e-14 Identity = 55/174 (31.61%), Postives = 81/174 (46.55%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLV--TEDDLSG--------FVDNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGTVERVMRKVFRALQAMLAE 504 WV L R+L+VA G H G+ + + + + + F+ + L + K G +PRP T +K E++HFDFL++G+S A YVLV T +S D +HFKN + L I VA+ W NGTVER+ R V + L+ +L E Sbjct: 730 WVPEMEVALLQRILIVAHCGTQGHRGIEPMMTTVTEIFEIANLTQVCRRFLSKCLLCKHVKGGNIIPRPWGPTCDAKKRNELLHFDFLYLGDSMGACKYVLVLKTVSRISKRFGAPSILISDQGSHFKNGFI----TMLDIDQSLVVAYVPWINGTVERLNRDVLQVLRVLLME 899
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR) HSP 1 Score: 76.6 bits (187), Expect = 3.370e-13 Identity = 34/111 (30.63%), Postives = 60/111 (54.05%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFV 345 W+ +L + ++V + G H G+ T +R W+++++D K +R + +TG VPRPL + G++ EVVH DFL++G+ Y+L+ DDLS ++ Sbjct: 277 WIPQQDLELQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKKYLLILRDDLSSYI 387
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: W2M2Q8_PHYPR (Chromo domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2M2Q8_PHYPR) HSP 1 Score: 75.1 bits (183), Expect = 9.260e-13 Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 1 Query: 13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFV 345 W+ A L +R+ VV G A H G TL ++ +W M D + F+++ L+ + G + R L + E E++ +DFL++GES V YVLV +DD S FV Sbjct: 5 WIPEEAAALQMRVCVVGHFGVAGHRGSAVTLKQISERFVWKGMNRDVEYFVQRCLHCLSTLGGPSQQRALGEAMHAEHPNELIRWDFLYMGESNVGQTYVLVIKDDTSKFV 115 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14801.2863.1 >prot_H-paniculata_contig14801.2863.1 ID=prot_H-paniculata_contig14801.2863.1|Name=mRNA_H-paniculata_contig14801.2863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp HRGEWVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDback to top mRNA from alignment at H-paniculata_contig14801:3356..3967- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14801.2863.1 ID=mRNA_H-paniculata_contig14801.2863.1|Name=mRNA_H-paniculata_contig14801.2863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig14801:3356..3967- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14801:3356..3967- >mRNA_H-paniculata_contig14801.2863.1 ID=mRNA_H-paniculata_contig14801.2863.1|Name=mRNA_H-paniculata_contig14801.2863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig14801:3356..3967- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |