mRNA_H-paniculata_contig14801.2863.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14801.2863.1
Unique NamemRNA_H-paniculata_contig14801.2863.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A2P4WXA7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXA7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.180e-30
Identity = 62/169 (36.69%), Postives = 92/169 (54.44%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFV-----DNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGTVERVMRKVFRALQAMLAE 504
            W+   A +L +R+ +V   G A H     TL  +    +W+ +  D K F+ + L+ A+   G   PRPL   +  E+  E++H+D+L +G+S     YVLV +DD S +V     D   HFKN V+     ALG  +HF+ A   W NGTVE VMR+V R  +A+L+E
Sbjct: 1086 WLPADASELQLRICIVGHFGAAGHRTAEVTLKNIASVFVWSDLVSDVKQFVARCLHCASVSGGPPFPRPLGEALHAERPNELLHWDYLSMGDSTKGEKYVLVLKDDASNYVWLWVSDQGTHFKNAVIQALQRALGAHHHFTTARCPWANGTVEVVMREVLRCCRALLSE 1254          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.870e-25
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASA----------YVLVTEDDLSGF 342
            W+  +A  + +RL++ A M EA H GV  T+ RLR YC W+TM+ D K+F++Q L+  + K+G  VPRP   TV G++ GEV+HFD+LH+G+S    A          Y+LV  DDLS F
Sbjct:  406 WIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNF 525          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.280e-25
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASA----------YVLVTEDDLSGF 342
            W+  +A  + +RL++ A M EA H GV  T+ RLR YC W+TM+ D K+F++Q L+  + K+G  VPRP   TV G++ GEV+HFD+LH+G+S    A          Y+LV  DDLS F
Sbjct: 1182 WIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNF 1301          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A225VTN3_9STRA (Gag-pol Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VTN3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.020e-16
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  139 MEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFV-DNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGTVERVMRKVFR 480
            M  D   F+++ L+ A+   G   PR L   +  E   E++H+DFL++GES+   AYVLVT      +V D   HFKN+V+     A+G  +HF+ A   W NGTVE V R+V R
Sbjct:    1 MARDVDFFVQRCLHCASTLGGPPQPRLLGEAMHAEHPKELLHWDFLYMGESDTNQAYVLVTHPMCRSWVSDQGTHFKNKVIEALQHAIGGHHHFTTARCPWANGTVEVVNREVLR 115          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A225W2P9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W2P9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.030e-15
Identity = 57/187 (30.48%), Postives = 85/187 (45.45%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFVD------------------------NAAHFKNRVLGK-TALALGIQYHFSVAHSAWKNGTVERVMRKVFRALQAML 498
            W+  +A  L  R++VVA  G   H G    L  L+     T +E+    F RQ L   ++K    +PRP  + +   +  EVVH+DFL +GE    S+Y+LV +D LS F +                        +    K R  G   A  L ++  FS  +S W NGTVER+ + V +  +A+L
Sbjct:  892 WIPSNAKDLIARIVVVANCGSQGHRGQEPMLLALKERFYITKLEDKVAKFFRQCLPRKHFKGPRQIPRPDGQLLQANERNEVVHWDFLSLGEGFCDSSYLLVVQDGLSHFCEFFPCATPMAYAAAEALTLWYGCQRHCGRTKARTSGTHQAARLKMELSFSPVYSPWLNGTVERLNKDVLQVFRALL 1078          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A225UPK1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UPK1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.110e-15
Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFVDNAAHFKNR 372
            W+   A +L +R+ VV   G A H GV TT++++    +W  M +D + F+   L+ A+   G   PR L   +  E+  E++H+D+L +G+SE    YVLV +DD S  +   +H K+R
Sbjct:  148 WIPDDAAELQMRVSVVGHFGIAGHRGVATTVEKICGQSVWKGMNKDIELFVNPCLHCASSVGGPPQPRLLGEAMHAERPNELIHWDYLFMGDSETKDCYVLVIKDDASS-LSGCSHAKSR 266          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A2P4XBD9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBD9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.330e-15
Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFVDNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGTVERVMRKVFRALQAMLAE 504
            WV      L  R+L+VA      H G+   +  +        + +  + F+ + L   + K G  +PRP   T   +K  E++HFDFL++G+S  A+  +      +S   D  +HFKN ++      L I     VA++ W NGTVER+ R V + L+ +L E
Sbjct:  414 WVPEMEVALLQRILIVAHCETQGHRGIEPMMTTMTAIFEIANLTQVCRRFLSKCLLCKHVKGGNIIPRPWGPTYDAKKRNELLHFDFLYLGDSMGATETIWCPSILIS---DQGSHFKNELITMVCKKLAIDQSLVVAYAPWINGTVERLNRDVLQVLRVLLME 574          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: A0A2P4XB16_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XB16_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.640e-14
Identity = 55/174 (31.61%), Postives = 81/174 (46.55%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLV--TEDDLSG--------FVDNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGTVERVMRKVFRALQAMLAE 504
            WV      L  R+L+VA  G   H G+   +  +        + +  + F+ + L   + K G  +PRP   T   +K  E++HFDFL++G+S  A  YVLV  T   +S           D  +HFKN  +      L I     VA+  W NGTVER+ R V + L+ +L E
Sbjct:  730 WVPEMEVALLQRILIVAHCGTQGHRGIEPMMTTVTEIFEIANLTQVCRRFLSKCLLCKHVKGGNIIPRPWGPTCDAKKRNELLHFDFLYLGDSMGACKYVLVLKTVSRISKRFGAPSILISDQGSHFKNGFI----TMLDIDQSLVVAYVPWINGTVERLNRDVLQVLRVLLME 899          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 76.6 bits (187), Expect = 3.370e-13
Identity = 34/111 (30.63%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFV 345
            W+     +L + ++V +  G   H G+  T   +R    W+++++D K  +R   +    +TG  VPRPL   + G++  EVVH DFL++G+      Y+L+  DDLS ++
Sbjct:  277 WIPQQDLELQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKKYLLILRDDLSSYI 387          
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Match: W2M2Q8_PHYPR (Chromo domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2M2Q8_PHYPR)

HSP 1 Score: 75.1 bits (183), Expect = 9.260e-13
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 1
Query:   13 WVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEEDAKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVASAYVLVTEDDLSGFV 345
            W+   A  L +R+ VV   G A H G   TL ++    +W  M  D + F+++ L+  +   G +  R L   +  E   E++ +DFL++GES V   YVLV +DD S FV
Sbjct:    5 WIPEEAAALQMRVCVVGHFGVAGHRGSAVTLKQISERFVWKGMNRDVEYFVQRCLHCLSTLGGPSQQRALGEAMHAEHPNELIRWDFLYMGESNVGQTYVLVIKDDTSKFV 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14801.2863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4WXA7_9STRA6.180e-3036.69Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6H5JCX8_9PHAE3.870e-2544.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE4.280e-2544.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A225VTN3_9STRA3.020e-1640.00Gag-pol Polyprotein n=1 Tax=Phytophthora megakarya... [more]
A0A225W2P9_9STRA1.030e-1530.48RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A225UPK1_9STRA3.110e-1534.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4XBD9_9STRA3.330e-1529.88Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A2P4XB16_9STRA1.640e-1431.61Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
R7Q542_CHOCR3.370e-1330.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
W2M2Q8_PHYPR9.260e-1334.23Chromo domain-containing protein n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14801contigH-paniculata_contig14801:3356..3967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue8e-24
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size504
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14801.2863.1prot_H-paniculata_contig14801.2863.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14801 3356..3967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.559879-CDS-H-paniculata_contig14801:3355..35151622929178.559879-CDS-H-paniculata_contig14801:3355..3515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14801 3356..3515 -
1691480761.674294-CDS-H-paniculata_contig14801:3355..35151691480761.674294-CDS-H-paniculata_contig14801:3355..3515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14801 3356..3515 -
1622929178.5792599-CDS-H-paniculata_contig14801:3599..36371622929178.5792599-CDS-H-paniculata_contig14801:3599..3637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14801 3600..3637 -
1691480761.6869075-CDS-H-paniculata_contig14801:3599..36371691480761.6869075-CDS-H-paniculata_contig14801:3599..3637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14801 3600..3637 -
1622929178.5959337-CDS-H-paniculata_contig14801:3661..39671622929178.5959337-CDS-H-paniculata_contig14801:3661..3967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14801 3662..3967 -
1691480761.6992524-CDS-H-paniculata_contig14801:3661..39671691480761.6992524-CDS-H-paniculata_contig14801:3661..3967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14801 3662..3967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14801.2863.1

>prot_H-paniculata_contig14801.2863.1 ID=prot_H-paniculata_contig14801.2863.1|Name=mRNA_H-paniculata_contig14801.2863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
HRGEWVLPSAHQLHVRLLVVAQMGEASHIGVGTTLDRLRRYCIWTTMEED
AKDFIRQGLYYANYKTGTTVPRPLARTVSGEKAGEVVHFDFLHIGESEVA
SAYVLVTEDDLSGFVDNAAHFKNRVLGKTALALGIQYHFSVAHSAWKNGT
VERVMRKVFRALQAMLAE
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mRNA from alignment at H-paniculata_contig14801:3356..3967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14801.2863.1 ID=mRNA_H-paniculata_contig14801.2863.1|Name=mRNA_H-paniculata_contig14801.2863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig14801:3356..3967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCGCGGGGAGTGGGTGCTTCCAAGCGCGCATCAGCTGCATGTGCGGCT GCTGGTGGTTGCACAAATGGGTGAGGCGTCCCATATAGGCGTAGGGACTA CGCTGGATCGGCTGCGGCGGTACTGCATTTGGACCACAATGGAGGAGGAT GCTAAGGACTTCATCCGCCAGGGTCTCTACTATGCGAACTACAAGACAGG AACGACAGTGCCACGCCCATTGGCAAGAACGGTGTCTGGCGAGAAGGCAG GAGAAGTGGTCCACTTCGATTTCTTGCACATCGGAGAGAGCGAGGTTGCA TCGGCGGTGGATACGCTAGACGGATAATAGTACGTGCTGGTAACCGAGGA TGACCTCAGCGGATTTGTGTGACTGGCGCCGGCGAAGGCGCGTACCGCGA ATTTTACGGCCGAACAACTGGTGAAGTGATGCACGCCACGCACGTGGGTC AGCGACAACGCGGCACATTTCAAGAACCGTGTGCTGGGGAAGACCGCGCT GGCGCTGGGGATTCAGTATCATTTCTCTGTCGCCCACTCCGCGTGGAAGA ATGGCACGGTCGAGCGGGTGATGCGCAAAGTGTTTAGGGCGCTACAAGCG ATGTTGGCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14801:3356..3967-

>mRNA_H-paniculata_contig14801.2863.1 ID=mRNA_H-paniculata_contig14801.2863.1|Name=mRNA_H-paniculata_contig14801.2863.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig14801:3356..3967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCGCGGGGAGTGGGTGCTTCCAAGCGCGCATCAGCTGCATGTGCGGCT
GCTGGTGGTTGCACAAATGGGTGAGGCGTCCCATATAGGCGTAGGGACTA
CGCTGGATCGGCTGCGGCGGTACTGCATTTGGACCACAATGGAGGAGGAT
GCTAAGGACTTCATCCGCCAGGGTCTCTACTATGCGAACTACAAGACAGG
AACGACAGTGCCACGCCCATTGGCAAGAACGGTGTCTGGCGAGAAGGCAG
GAGAAGTGGTCCACTTCGATTTCTTGCACATCGGAGAGAGCGAGGTTGCA
TCGGCGCATCGCGGGGAGTGGGTGCTTCCAAGCGCGCATCAGCTGCATGT
GCGGCTGCTGGTGGTTGCACAAATGGGTGAGGCGTCCCATATAGGCGTAG
GGACTACGCTGGATCGGCTGCGGCGGTACTGCATTTGGACCACAATGGAG
GAGGATGCTAAGGACTTCATCCGCCAGGGTCTCTACTATGCGAACTACAA
GACAGGAACGACAGTGCCACGCCCATTGGCAAGAACGGTGTCTGGCGAGA
AGGCAGGAGAAGTGGTCCACTTCGATTTCTTGCACATCGGAGAGAGCGAG
GTTGCATCGGCGTACGTGCTGGTAACCGAGGATGACCTCAGCGGATTTGT
TACGTGCTGGTAACCGAGGATGACCTCAGCGGATTTGTCGACAACGCGGC
ACATTTCAAGAACCGTGTGCTGGGGAAGACCGCGCTGGCGCTGGGGATTC
AGTATCATTTCTCTGTCGCCCACTCCGCGTGGAAGAATGGCACGGTCGAG
CGGGTGATGCGCAAAGTGTTTAGGGCGCTACAAGCGATGTTGGCGGAGCG
ACAACGCGGCACATTTCAAGAACCGTGTGCTGGGGAAGACCGCGCTGGCG
CTGGGGATTCAGTATCATTTCTCTGTCGCCCACTCCGCGTGGAAGAATGG
CACGGTCGAGCGGGTGATGCGCAAAGTGTTTAGGGCGCTACAAGCGATGT
TGGCGGAG
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