mRNA_H-paniculata_contig14791.2859.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14791.2859.1
Unique NamemRNA_H-paniculata_contig14791.2859.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A6H5JW39_9PHAE (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW39_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.700e-75
Identity = 128/174 (73.56%), Postives = 154/174 (88.51%), Query Frame = 1 
Query:    1 RFFRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYGDRAQQQQDQEEVA 522
            R+FRTGDLGR+++GTYLRITGRIKEQYKLENGKYVVPGP+EAA+TSSTYITQAL++GDNRPFNVAL+FPDW+L+ +W ESK  A  G S EEL++M+ ++NLIAGE+ ++L+GFKKYE+PR+F LLEEGFTKENNMQTQKLSTKRHVVI HY DT+ H+YGDR  Q   QE+ A
Sbjct:  619 RYFRTGDLGRMEDGTYLRITGRIKEQYKLENGKYVVPGPIEAAMTSSTYITQALVFGDNRPFNVALVFPDWNLVRSWAESKGRASEGTSLEELASMDVVKNLIAGEIALSLDGFKKYEMPRTFELLEEGFTKENNMQTQKLSTKRHVVIKHYHDTLMHMYGDRVHQNHLQEQAA 792
[Close]
BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A835ZGH2_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH2_9STRA)

HSP 1 Score: 214 bits (546), Expect = 2.470e-55
Identity = 106/178 (59.55%), Postives = 133/178 (74.72%), Query Frame = 1 
Query:    1 RFFRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPG--ASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYGDR--AQQQQDQEEVA 522
            RFFRTGDLGR++EGTYLR+TGR+KE +KLENGKYVVPGP+EAALTSS YITQAL++G ++PFNVAL+ PDW +L  W + K    P   A    L+    +++LI GE+  ALEG KKYE+PR + LLEEGFT+E  M T K+S KRHVV+ HY + I HLY D+  A  QQ+Q +VA
Sbjct:  446 RFFRTGDLGRLEEGTYLRVTGRLKELFKLENGKYVVPGPIEAALTSSKYITQALLFGADKPFNVALLVPDWAMLQEWAKGKTDLTPDQLADKHALAASTAVQHLIQGEIQQALEGSKKYEIPRRWELLEEGFTQERGMLTPKMSVKRHVVVKHYHELIHHLYNDQGPALMQQEQLKVA 623
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BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A7R9WS53_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WS53_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.080e-39
Identity = 76/162 (46.91%), Postives = 107/162 (66.05%), Query Frame = 1 
Query:    1 RFFRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYGD 486
            R F TGDLGR D   ++R+TGR+KEQYKLENGKYVVP P+E A+  S Y++Q ++ G NRP N+ALI PDW  +     S+  A    + +EL+ M+ ++ LI  ++  +  G KK+E+P  +A +   FT EN M T K+S +RH V+  Y+D I+HLYGD
Sbjct:   36 RMFHTGDLGRKDSEGWVRVTGRLKEQYKLENGKYVVPTPIEEAIGMSRYVSQVVLCGANRPHNIALIVPDWAAI----RSEVKAADDVTEQELAGMDAVKTLIDEQLKSSCSGLKKFEIPTEWAFVAP-FTAENEMLTPKMSIRRHKVMQAYEDVISHLYGD 192
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BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A7S2XXE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXE0_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.900e-39
Identity = 87/169 (51.48%), Postives = 110/169 (65.09%), Query Frame = 1 
Query:    1 RFFRTGDLGRVDE------GTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAG--ARPGASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYG 483
            R+FRTGDLGR+        G +L++TGRIKE YKLENGKYVVPGPVEA L++S YI+Q L+YGDNRP+N+ALI PDWDL+A W        A   A+   L++   +++LI GE+    EG K YE+PR + LL E  T E  M T K+S KRHVV   Y   +   YG
Sbjct:  461 RYFRTGDLGRLIHCPHRGGGPFLKVTGRIKELYKLENGKYVVPGPVEAQLSNSRYISQVLVYGDNRPYNLALIVPDWDLVADWAAEADPPLAAGSATKRALASHLGVQHLIEGELQRHGEGLKGYELPRRWVLLGEALTAERGMLTPKMSIKRHVVFKAYAGAMEAAYG 629
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BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A6U4FS11_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FS11_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.500e-38
Identity = 88/175 (50.29%), Postives = 112/175 (64.00%), Query Frame = 1 
Query:    4 FFRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIRNLIAGEMD--MALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYGDRAQQQQDQEEVA 522
            +FRTGD+G VDE   L+ITGR+KEQ+KLENGKYVVPGP+E A  +S +I Q +I+GDNRP+NVAL+ PD  +   W +  A     A +EE+     ++ L   EM+   A E  KKYEVPR + L+EE FT  NN  T KLS KRHVV   Y+D +  LY    Q+ Q Q E A
Sbjct:  481 YFRTGDMGNVDEANRLKITGRLKEQFKLENGKYVVPGPLEEAFCTSPFIQQCVIWGDNRPYNVALVVPDRAVFDPWLQKNAPHLADAPWEEVIANPIVQELFDAEMEGAAAREVLKKYEVPRRWYLVEEAFTAANNFLTPKLSVKRHVVFKVYEDKLLELYQAPDQRVQKQVEEA 655
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BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A7S0AJF5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AJF5_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.810e-37
Identity = 79/162 (48.77%), Postives = 105/162 (64.81%), Query Frame = 1 
Query:    1 RFFRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYGD 486
            R F TGDLGR+ E  ++RITGR+KEQYKLENGKYV P P+E A+  S +++Q ++ G NRP NVALI PDW  + T    + G     S E+L+  + +R LI  E+     G KK+EVP  F  +   FT  NNM T K+S +RH+VI  Y+D IA++YGD
Sbjct:  170 RLFHTGDLGRMSEDGWVRITGRLKEQYKLENGKYVCPTPIEEAIGMSRFVSQIVLCGANRPHNVALIVPDWAAIRT----ELGVGEDTSEEDLANDDRVRELIHSEIKSNAGGLKKFEVPLDFTFVAP-FTAANNMLTPKMSIRRHMVIRAYEDEIANMYGD 326
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BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A7R9WQU6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQU6_9STRA)

HSP 1 Score: 148 bits (373), Expect = 4.260e-36
Identity = 73/162 (45.06%), Postives = 106/162 (65.43%), Query Frame = 1 
Query:    1 RFFRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYGD 486
            R F TGDLG +D+  ++R+TGR+KEQYKLENGKYVVP P+E A++ S +I+Q ++ G NRP NV L+ PDW  +      +       S ++L++ + +R LI GE+      FKK+E+P  +AL+   FT  N+M T K+S +RH V+  Y+D IAHLY +
Sbjct:   79 RMFHTGDLGTMDDDGWVRVTGRLKEQYKLENGKYVVPTPIEEAISLSRFISQVVLCGANRPHNVVLLVPDWTAV----RDELDFAASVSEDDLASDDRVRRLIDGEVTSHCAQFKKFEIPTKWALVAP-FTNANSMLTPKMSIRRHKVMQAYEDVIAHLYDE 235
[Close]
BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A7S1ZIK8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK8_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.780e-35
Identity = 71/162 (43.83%), Postives = 101/162 (62.35%), Query Frame = 1 
Query:    1 RFFRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYGD 486
            R F TGDLGR+ E  ++++TGR+KE YKLENGKYV P P+E A+  S +I Q ++ G NRP+NVAL+ PDW  +     S+      A  E+L     ++ LI GE+       KK+EVP+ +  +   FT  NNM T K+S +RH+V+  Y++ IA +YGD
Sbjct:   63 RLFHTGDLGRMGEDGFVQVTGRVKEMYKLENGKYVCPTPIEEAIGMSRFINQVVLCGANRPYNVALLVPDWTAI----RSELSIDDSAPEEDLVNDSHVKRLINGEIQSLTARLKKFEVPQDWTFVAP-FTAANNMLTPKMSIRRHMVVKTYENLIARMYGD 219
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BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A832BWL4_9DELT (Long-chain fatty acid--CoA ligase n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A832BWL4_9DELT)

HSP 1 Score: 146 bits (369), Expect = 1.070e-34
Identity = 76/158 (48.10%), Postives = 95/158 (60.13%), Query Frame = 1 
Query:   10 RTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYG 483
            RTGD+GR+D+  YL ITGRIKEQYKLENGKYVVP P+E  L  S +I+  ++YG NRPFN+AL+ PD + L  W  +K    P   Y+ L     +  LI  E+    +  + YE  R F LL E FT +N M T  L  KR +VI  Y D I  LYG
Sbjct:  184 RTGDMGRLDDDGYLYITGRIKEQYKLENGKYVVPSPIEEQLKLSPFISNVMLYGSNRPFNIALVVPDRETLLVW--AKTEGLPVNDYDALLRDAKVHTLIEAELKEQSKEIRHYEQVRKFNLLSEDFTVDNEMLTPSLKLKRRIVIKAYGDHIDALYG 339
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BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Match: A0A328C3T3_9DELT (Long-chain fatty acid--CoA ligase n=6 Tax=Bradymonadales TaxID=1779134 RepID=A0A328C3T3_9DELT)

HSP 1 Score: 152 bits (384), Expect = 1.070e-34
Identity = 78/160 (48.75%), Postives = 101/160 (63.12%), Query Frame = 1 
Query:    7 FRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYITQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIRNLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVIDHYQDTIAHLYGD 486
            F TGDLGRVDE  Y+ I GR+KEQYKLENGKYVVPGP+E  L  S Y+ Q ++ G N+ +NVALI  D + L TW ++      G S +EL T   ++ L   E++      K YE P+ FAL+EE F+ EN+M T KLS KR VV+  Y + +  LY D
Sbjct:  437 FHTGDLGRVDEDGYVWILGRVKEQYKLENGKYVVPGPIEEQLKLSPYVNQVMVEGTNKAYNVALIVVDLENLGTWADNN-----GVSRDELLTHPKVKELYRKEIERVSSTLKGYERPKRFALIEEEFSAENDMLTPKLSVKRRVVLARYGELLNSLYND 591
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14791.2859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW39_9PHAE1.700e-7573.56AMP-binding domain-containing protein n=2 Tax=Ecto... [more]
A0A835ZGH2_9STRA2.470e-5559.55Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A7R9WS53_9STRA1.080e-3946.91Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2XXE0_9STRA3.900e-3951.48Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6U4FS11_9STRA1.500e-3850.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0AJF5_9STRA3.810e-3748.77Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7R9WQU6_9STRA4.260e-3645.06Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1ZIK8_9STRA8.780e-3543.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A832BWL4_9DELT1.070e-3448.10Long-chain fatty acid--CoA ligase n=1 Tax=Nannocys... [more]
A0A328C3T3_9DELT1.070e-3448.75Long-chain fatty acid--CoA ligase n=6 Tax=Bradymon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14791contigH-paniculata_contig14791:16..5966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue2.2e-32
Seed eggNOG ortholog529818.AMSG_12039T0
Preferred nameFER1L6
KEGG koko:K18261,ko:K19949,ko:K22125,ko:K22126,ko:K22127
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001505,GO:0001775,GO:0001778,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003674,GO:0005488,GO:0005509,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005789,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005901,GO:0006810,GO:0006836,GO:0006887,GO:0006906,GO:0006928,GO:0006936,GO:0006950,GO:0006996,GO:0007009,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007304,GO:0007338,GO:0007343,GO:0007389,GO:0007423,GO:0007600,GO:0007605,GO:0008015,GO:0008021,GO:0008150,GO:0008289,GO:0009266,GO:0009408,GO:0009566,GO:0009605,GO:0009611,GO:0009612,GO:0009628,GO:0009653,GO:0009888,GO:0009966,GO:0009987,GO:0010256,GO:0010646,GO:0010996,GO:0012505,GO:0012506,GO:0015630,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0016323,GO:0017156,GO:0019953,GO:0021700,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030027,GO:0030030,GO:0030133,GO:0030139,GO:0030154,GO:0030315,GO:0030317,GO:0030381,GO:0030397,GO:0030658,GO:0030659,GO:0030672,GO:0030703,GO:0030707,GO:0030855,GO:0030947,GO:0031090,GO:0031143,GO:0031224,GO:0031226,GO:0031252,GO:0031253,GO:0031260,GO:0031268,GO:0031300,GO:0031301,GO:0031410,GO:0031965,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032809,GO:0032940,GO:0033554,GO:0034605,GO:0034622,GO:0035045,GO:0035612,GO:0036477,GO:0040011,GO:0042060,GO:0042175,GO:0042383,GO:0042734,GO:0042995,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0043933,GO:0044085,GO:0044297,GO:0044298,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044853,GO:0044877,GO:0045055,GO:0045121,GO:0045177,GO:0045178,GO:0045202,GO:0045995,GO:0046872,GO:0046903,GO:0046907,GO:0048232,GO:0048240,GO:0048284,GO:0048468,GO:0048469,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048786,GO:0048787,GO:0048839,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050885,GO:0050896,GO:0050905,GO:0050954,GO:0051179,GO:0051234,GO:0051239,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0060429,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070382,GO:0071840,GO:0071944,GO:0090102,GO:0090174,GO:0090287,GO:0097060,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097722,GO:0098588,GO:0098589,GO:0098590,GO:0098793,GO:0098805,GO:0098827,GO:0098857,GO:0098916,GO:0099003,GO:0099501,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120036,GO:0120038,GO:0140029,GO:2000026
EggNOG free text desc.plasma membrane repair
EggNOG OGsCOG1022@1,KOG1256@2759,KOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons3
Model size3686
Cds size525
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14791.2859.1prot_H-paniculata_contig14791.2859.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14791 3177..5966 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.876299-UTR-H-paniculata_contig14791:15..31761622929177.876299-UTR-H-paniculata_contig14791:15..3176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14791 16..3176 -
1691480761.3484724-UTR-H-paniculata_contig14791:15..31761691480761.3484724-UTR-H-paniculata_contig14791:15..3176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14791 16..3176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.8863337-CDS-H-paniculata_contig14791:3176..33471622929177.8863337-CDS-H-paniculata_contig14791:3176..3347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14791 3177..3347 -
1691480761.357835-CDS-H-paniculata_contig14791:3176..33471691480761.357835-CDS-H-paniculata_contig14791:3176..3347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14791 3177..3347 -
1622929177.8967106-CDS-H-paniculata_contig14791:4533..47311622929177.8967106-CDS-H-paniculata_contig14791:4533..4731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14791 4534..4731 -
1691480761.3736756-CDS-H-paniculata_contig14791:4533..47311691480761.3736756-CDS-H-paniculata_contig14791:4533..4731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14791 4534..4731 -
1622929177.9068093-CDS-H-paniculata_contig14791:5810..59661622929177.9068093-CDS-H-paniculata_contig14791:5810..5966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14791 5811..5966 -
1691480761.392433-CDS-H-paniculata_contig14791:5810..59661691480761.392433-CDS-H-paniculata_contig14791:5810..5966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14791 5811..5966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14791.2859.1

>prot_H-paniculata_contig14791.2859.1 ID=prot_H-paniculata_contig14791.2859.1|Name=mRNA_H-paniculata_contig14791.2859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
RFFRTGDLGRVDEGTYLRITGRIKEQYKLENGKYVVPGPVEAALTSSTYI
TQALIYGDNRPFNVALIFPDWDLLATWGESKAGARPGASYEELSTMEPIR
NLIAGEMDMALEGFKKYEVPRSFALLEEGFTKENNMQTQKLSTKRHVVID
HYQDTIAHLYGDRAQQQQDQEEVA*
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mRNA from alignment at H-paniculata_contig14791:16..5966-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14791.2859.1 ID=mRNA_H-paniculata_contig14791.2859.1|Name=mRNA_H-paniculata_contig14791.2859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5951bp|location=Sequence derived from alignment at H-paniculata_contig14791:16..5966- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTCTTTCGCACGGGAGACCTTGGTCGTGTGGACGAAGGCACGTACCT
TCGGATAACCGGCCGCATCAAGGAGCAATACAAGCTCGAGAACGGCAAGT
ACGTAGTGCCTGGCCCTGTGGAGGCCGCTCTGACGTCATCAACGTACATC
ACGCAGGTGAAAACATGTACTGTATTTTGTGATTTTGTGAAAACACGGTA
GTACATGGAAACAACACAGGTGAGGGTCACAAGAAGCCAATGTAATGACC
CAGTATAACCAAGAAGACAGTACTTATATATTAATTGATAGCCTCTCTGA
TCTGCTCTGTGTATCAGACGTTGACTGTATGATACCACATTTACGTCTAC
ATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATATATATATAATATT
GTTTCGTACGTATTGGTTTCGAAGTGTACGAATTTGTTACTTGTAAACCC
TAACCTTGGCCTATTATGTTCCTGTCTCAGAGCCAACGCGTCCACCTACG
GGAAGTGGTTGCTGCACAAGCAGAGGTTGTAAAGGTTTGTTTCTCCATGA
AACCCCTTTCACACCAATGAACCCTCAATACCTTGTACGTTCATTTTCCA
TTACAAGAAAAAAAAATTGCGGCAAAAGCCCATTAGTCCAAACCCACACG
TAATGGACGTTGTGCTAACTAACGGTACGTGAATTGATACAAAAAGCGGT
TTGGACAAAAAATTGCAGCGAGGGTGAAATTTTTACAGTTGGTGCTAATA
GGATCTTCATCAAGCGACCAACGAAGCGATGTGACTGTTGTTGTTATGTG
ACTATCTTCCTGTTGTTGGGTACGAAGAATACGCAGTGATTGCATCAGAA
TAACGAAACCCCTGAAGTGCCACATATTTGAGCTCCCAGGAGCCATCATA
CGTTTGTGCAATCAAGTGTATCATATGTGGAAATGAGGGAATATGTCCTC
GACAGACGTTGGGTGACTACTAGCCCCCTCTAAAGTGTTTCTAACCTTGC
CAACATGCACATGTGTAATACCTTATTCATGGATTATGACTACAGGATCT
CTACTAAGTGGCGTATGACTCTTGAATTTCCGGTTGATCCAGAACTAACT
AAAGAATTACAAGTGCCTTGCGGAGGTCTATACATCGAACGCGATATGAC
AATCGCTGTAACTTGCTAACACCAACACACACACACACACACACACACAC
ACACACACACATACACATATTCTGTGTGGTTTCAGGCACTGATCTACGGA
GACAATCGACCGTTCAACGTAGCTCTCATTTTCCCTGACTGGGATTTACT
GGCCACGTGGGGCGAGAGCAAGGCGGGAGCTAGGCCCGGCGCATCGTACG
AAGAGTTGTCTACTATGGAGCCGATACGAAATCTCATCGCCGGAGAGATG
GATATGGCTCTTGAGGGGTTCAAGAAGTACGAGGTAAGTATTTATTCCCA
TCAATACTGGAGTATATGAAGAAGCCAGGACGGCCCAACGAGCGAAATCA
GTGATTGACACCCCATAGCGTACCATCTGTCACCTCCAACTGACATAAAA
ATCGCTGATTCGTAGTGCTGCACTTTCGATTCAAAGAATCATTTACGAAT
GGGGAAAAGATCGTATTCAATGTTAAATTCTCTTGTTTTAGTAGTTTGTG
TCGTTGAATTCTTGGGGCTTAAACATTCAGTAATAACAATAATAAAAATA
AAACACACACACACATACACAATCGGCATGCCAGTAGATATATATATATA
TATTATTTTTTTTCAAAAATTTGCAGGATATGTTTACGTAAGAACATAGA
GATACAAAATATGAGATTGTTTTTTGGTTCTTGAGCATGATGTCCACGGA
TCATCGACCTATACGAAATGTCCATTTTGTGAAGCCAAATAATTGCAAAG
TTTAAAAACGAAAATAACGTGGTTAGTCCCCGGAATACGACCGCATTCTT
GATGGAAATACCTGGACATCTGAACCTATGAGGAATCGAACCAGGAAACG
ACCAAGTGGGGACTTCTTGAAGGCCAGTCGTGAACGATGGCAAATGCGTC
TACGAAATGCTTGAAAAGATCCACGCGAGAGATCCAAGTGTAATGAAATT
GAGTGGGCTTTCCTGTTCTAAGCACCATTGACAATTTTCATCGAGGCAGA
GGTACCGACCGGGCTACCAATTAAGCAAGAGGGATTCAAGATGGTCGACA
ACGCCGTGGCGGGAAAAGATCCAAACGAACGTTATTCTATTATAGTACGA
ACCCAATTATCGAAGCCCAACATCCATTGACCAAGACAAAACTAGAGTAC
ATGGATAAAAATACTCAAGTCACAAAGCAGGACCACAGCGACGCAGAACC
TCTGGGCACGGTGCTCGAGGTAACGAAGGATGAAATATTCTACGTAGGTC
AAGGGGGCCGATAACTCTCAGTTCTGGAGCCATGGCCCAAAAGCCGTTTG
TAACCCAAAAAAGAGGATGACTGCTATTATAGTATATTCACAATATTTTT
TTACTCTTGCAGGGGCTTCGGGATCTTGCTCTGGCATGCGGAGGTTTTGA
ACAAAAAATAGTATGTCCGACTGAGGAGCACCCCACTCCCCTCGTCCCAC
GCGCACGTACTTCCAACAGGTCCCGAGGAGCTTCGCTCTGCTGGAAGAGG
GCTTCACCAAGGAGAATAACATGCAGACGCAAAAGCTTAGCACCAAGAGA
CACGTGGTCATCGATCATTACCAAGACACCATCGCGCACCTCTACGGCGA
CAGAGCGCAGCAGCAGCAGGATCAGGAGGAAGTGGCTTGAGTATTTAGCC
ACCTAGCCACCATAGCTAGGGTGGAGGAAGGTAATTCAAGTCGCACGCAG
TACGCCCGAGCTTATCCTATTTTGTGCTGGAGCATGCGTGCATTTTCTAC
CGAGACCCCCGAGCAACAGGTATCACGTTGACCGTATACCCTATACTTGA
GGATGCTCTTGAACCCGAAGTAAATATTAGTGATCTCGAAGCTACTGAGG
GGGGATTTGGCTGCCGAGGCAGGACCTCCATTAGGGCAGTTCCAGCAATG
CGAGGGTTATGTTGGGTGCGATCTCAATATTTCGCAACAGCAGTTCATCT
CGCCCGCTGTTCATCTACGCTCGGAATAGATGTGAGTAGAATGACAGCGT
ACCTTTGGTGAGGAGAAATTCGCCTCTTTTCCGTCGGTCCATCTATGCGG
TACGAGGTATGGTTGAGGGTTTGCGAACCTTGGATGGTTTAACGTTGTTC
CAAAGCTTGCCGTTTTATGATGCATTGATATAGGGGACGTTTTTTGGGTG
TTTCGAGAGATGGGTCACTTGAAGCCCTGACCGTCCAGTTAAGTACGATC
TCAATGATAAGGCAGGCGGGCGGGTGAGAGGAAGTCCTGGATATTTTTGG
GTACTGGCTGCTACGGGGTACTATGGCACGTCTCGCAACGGCCAACAAGA
TTGTGACATGATAATCCCTTCTCAAAAAGCTATATTGAGTATGGCTCTCA
AGGGAATTTAACCGTGGTTTGTGCTTTCCGTTTCTGCGGGGTCACTTGCC
CGATATTCCCAGCTTCAAGAAGGAGGGCCAATGTTTGATATTTTCTCAGC
AGCATGCAAGCCTAGGTGGGTTGGTTTGTTTGTGATTTCTGTGTTTGCCA
CGATTATGGATATATTGGTAGAGTTACGGGGAGACAAGAGAGGCTGATGT
TCTTTTTTTTGCAGATTTTGCTGCTCTGTTTTCGTGGTCCGTTTTTGTCT
CAAAGGAACGGCAGTGGATTATCAGTTTGTTTTCCTTGCAGCATACAACA
TACCGCCACACAATATATACATGTACTTGGCAGAGACCAGGATTGGAAAA
TGGTCTAGAGGAGATATTTGTACATGACATGACACCATAGATACTGAGGA
AGGGGTGGTTAAGATGGTGCAAGACACAACGGGGAACTCCCCTCCATTCC
CTCTGCCTCTTTCCATGCCCAGAGGCTAGACCCGCTTGATTGATTCACGC
TTTTGCTGTGTACATTGTCAACGCTGGTAGGGCGAAGGGTATTGGAGACG
GGGAAGGGTCGGAGCGGAGAGAAATTGACCAAAAACAGGCGGCTTGAGGA
TCGACTCAAATGATCAAGTAAGAGTAAGGTATTAAAAAAAAAAATGGCGT
TTGGGGATGTGACTGTTGGGTGAAGGAGATATTTCCTTCACGCCGTGGGT
GTGGGGTGCAGATACGGTGTGTGAATCTTGAAGCTTGGTTCTACTTCCGG
GCGGAGGTGATGATGTGACTTGACTATTCAAGGGGGGTAATATTCTCTTG
TATCGTTTCGTCATACTGTAATATGACCGTGTCGACCATGTGATGGATAC
TGAGTGAACACGAAATGGGGGGGGGGATATACATATTGCAAGAGGTACCC
CCCTATGTAGATAAGACCGCGCCCTGCCCTGTCTCCGTCCTTTTTTTTTG
TCGGTTTCGCCTCTTGAGAAGCTTATTGCAAAGGGTGTGGGAACATGGAG
GAGAAATAACGACTGGTGAGATTAATGACTTGTAGGTGCGATTATGGGAG
CTCTATTGTGTTTTTTTTGTGTGTGTCACTCGGCGATGTTTTGGGGTGAA
CTTTGCCCCCGAACATGATGAGTTGCTATGTAGCACAAGGTTTTTTGGGC
GAAATGATGGTACTTGAAAGTATTGTGGCTAAAAGAGAGACGAAACACAA
GATACCGTGTAAAAGACGGAAACGTCAGAATGAATCTTGGGCGAAGGCAA
GAATAATAGCTTTTTCTTATGGCATGGTGGTAGATGGCAGACAAGACATA
GAAAAAACAATCCAAAGACCCAACAATGGAGTGGCAGTATATATGGTATT
TTCTCGGAATTTTGAGCTGGTTCGGGAATAATTGTTTTAATTGCTGCATG
CCCGCGGCTTTTAGGGGAGCCAGTTGTTGCGAGGGATGAACGGCAAAACA
CGTTGTTGTATCATGAGCATATAGTGTACAACGTGGTTTCGGGCGAAACG
CGTGTATATGTAGGCCATTATGCAAGGAACGGTGCGACGGGAATGGCTTG
AAATAGATACCAAGGTTGTTTTTATTTTAGTAGGTCGTGTTTGTTGCATA
CATGATTTTTTTCAAGTAGAGGCGGCAATTTGTTTAGTAATCACAGCTGG
AGGACCGTGAAGCGAACCAGAGCAGGGTGCTTGGACTGTTCAGCAACTAC
TGAGTCTAGACAGACAATGTCGATGATGACGAAACAGCCTAAAATAATCA
TAACCCACAAGAGGGATTCATATGCAATAAGGAACCATCTTGCACGGGGA
GGGATTGCACGATCGATGAAAGAAGCGTGTACGCCGCACACAAACTCCAA
TCAGTGTACATATATACATCTGCTAAGTTCTGTATCGTGCCTTTCGTGAG
TTTTGTACGATAGTCTTCAAGATACTCGATGTATCGCCGCTCTTTCGGCG
TACCCTATATGTGTGTGTATGTGTTTTCTGCGTGTGTGTTTCTGTGTGTT
TTTTCTGTATCACTCGCGGGGGGACGGCGGAAAGGGGCTATCCTACATAC
CGTCCACCACCAAGGCTCATTCGTAGATACCCGATTTTGTTTTAACTCTT
CTTGCTACTGCGCTCTGTACATGTTGAGATGTGAAGGAGCTGTAGGCGTT
GGGACCGATCTGTTTGGTCTAGACGGAGTGGGTACAAAGGCCTCGACCGC
GGACGGATGGGACGAGTGAACGTAATGCACATGAAACAAAAGAATCGGCC
AAAAGAAGGCCAAATGTTCGCAAGAGTACATAAGTAAAATGTGATAATAA
ACGCCGCAAAAGTTCACACGTCTGACTCGTGCAGCGCGTTGCAAGCGAAC
TTCGTACTGTTATGTCAGTCGTTCATGGAAAATCTTGCGACACTTCCACG
GACCTACGCCCGAACGGGTAGGGTAGCTCGTGTACTGAGCATGACTGGAA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig14791:16..5966-

>mRNA_H-paniculata_contig14791.2859.1 ID=mRNA_H-paniculata_contig14791.2859.1|Name=mRNA_H-paniculata_contig14791.2859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig14791:16..5966- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTCTTTCGCACGGGAGACCTTGGTCGTGTGGACGAAGGCACGTACCT
TCGGATAACCGGCCGCATCAAGGAGCAATACAAGCTCGAGAACGGCAAGT
ACGTAGTGCCTGGCCCTGTGGAGGCCGCTCTGACGTCATCAACGTACATC
ACGCAGAGGTTCTTTCGCACGGGAGACCTTGGTCGTGTGGACGAAGGCAC
GTACCTTCGGATAACCGGCCGCATCAAGGAGCAATACAAGCTCGAGAACG
GCAAGTACGTAGTGCCTGGCCCTGTGGAGGCCGCTCTGACGTCATCAACG
TACATCACGCAGGCACTGATCTACGGAGACAATCGACCGTTCAACGTAGC
TCTCATTTTCCCTGACTGGGATTTACTGGCCACGTGGGGCGAGAGCAAGG
CGGGAGCTAGGCCCGGCGCATCGTACGAAGAGTTGTCTACTATGGAGCCG
ATACGAAATCTCATCGCCGGAGAGATGGATATGGCTCTTGAGGGGTTCAA
GAAGTACGAGGCACTGATCTACGGAGACAATCGACCGTTCAACGTAGCTC
TCATTTTCCCTGACTGGGATTTACTGGCCACGTGGGGCGAGAGCAAGGCG
GGAGCTAGGCCCGGCGCATCGTACGAAGAGTTGTCTACTATGGAGCCGAT
ACGAAATCTCATCGCCGGAGAGATGGATATGGCTCTTGAGGGGTTCAAGA
AGTACGAGGTCCCGAGGAGCTTCGCTCTGCTGGAAGAGGGCTTCACCAAG
GAGAATAACATGCAGACGCAAAAGCTTAGCACCAAGAGACACGTGGTCAT
CGATCATTACCAAGACACCATCGCGCACCTCTACGGCGACAGAGCGCAGC
AGCAGCAGGATCAGGAGGAAGTGGCTTGAGTCCCGAGGAGCTTCGCTCTG
CTGGAAGAGGGCTTCACCAAGGAGAATAACATGCAGACGCAAAAGCTTAG
CACCAAGAGACACGTGGTCATCGATCATTACCAAGACACCATCGCGCACC
TCTACGGCGACAGAGCGCAGCAGCAGCAGGATCAGGAGGAAGTGGCTTGA
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