mRNA_H-paniculata_contig14785.2856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14785.2856.1
Unique NamemRNA_H-paniculata_contig14785.2856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 8.830e-84
Identity = 124/203 (61.08%), Postives = 155/203 (76.35%), Query Frame = 2
Query:  218 PGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGRSPGP 826
            P   +A   N+YGQ+NS YPV ET+AEG ++E+K+V+STYHWGH+E+F+CNA NLPGGPD T+ QSCFN++P DRA DD    P DP++ GR+ +D PCRA+ETDQ++  GA   +V TAR++LP+ L+CE+  +QMVYYTGNSC HQGY EFNP SWPS CAP+K DWI    G CG  D YPEEFWNCADI+ITS   P P
Sbjct:  107 PEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGPAP 309          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 6.120e-83
Identity = 133/217 (61.29%), Postives = 161/217 (74.19%), Query Frame = 2
Query:  218 PGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGRSPGPFPRPNPAPQPTIPE 868
            P   +A   N+YG +NS YPVLET+AEG ++E K+V+STYHWGH+E+F+C+AD+LPGGPD T+ QSCFN++P DR  DD   SPIDP++ GR+ +D PCRA+ETDQ M  GA  G+V TAR++LP+ LTCE+  +QMVYYTGNSC HQGY EFNP SWPS CAP K DWI    G CG  D YPEEFWNCADI+ITS   P P P     P PT PE
Sbjct:  106 PEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDGDPAPSPTTVLTPAPTAPE 322          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 9.050e-83
Identity = 125/198 (63.13%), Postives = 155/198 (78.28%), Query Frame = 2
Query:  230 SARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGI-CGGDDHYPEEFWNCADIAITSGRSP 820
            +A G NRYGQ+NS YPVLET+AEG ++E+K+V++TYHWGH+E+F+C+AD+LP GPD  + QSCFN+YP DRA DD   SPIDP + GR+ +D PCRA+ETDQ +  GA  G+V TAR+QLP+ +TCE+  +QMVYYTGNSC HQGY EFNP SWPS CAP+K DWI    G  CG  D YPEEFWNCAD++ITS   P
Sbjct:   59 AAEGSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDGGP 256          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 9.640e-83
Identity = 124/201 (61.69%), Postives = 154/201 (76.62%), Query Frame = 2
Query:  218 PGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGRSP 820
            P   +A G N+YGQ+NS YPVLET+AEG ++E+K+V+STYHWGH+E+F+C+AD+LP GPD  + QSCFN+YP DRA DD    PIDP + GR+ +D PCRA+ETDQ +  GA  G+V TAR+QLP+ +TCE+  +QM YYTGNSC HQGY EFNP SWPS CAP+K DWI    G CG  D YPEEFWNCAD++ITS   P
Sbjct:  104 PEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGP 304          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 3.120e-78
Identity = 178/403 (44.17%), Postives = 219/403 (54.34%), Query Frame = 2
Query:  218 PGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGRSPGPFP------------------RPNPAPQPTIPEXXXXXXXXXXEADSEPVSTXXXXXXXXXXXXXKRPGYPKKNY--------------------------PSSSXXXXXXXXXXXXXXXYASEDSTYQSEPMAAG----EPAELFDEPV------------DSCSGNWGQCGGSKFEGPNCCSAGAECVEKSEWFFHCVP 1246
            P   +A G N+YGQ+NS YPVLET+AEG ++E+K+V+STYHWGH+E+F+C+AD+LP GPD  + QSCFN++P DRA DD    PIDP + GR+ +D PCRA+ETDQ +  GA  G+V TAR+QLP+ +TCE+  +QM Y+  NSC HQGY EFNP SWP  CAP+K DWI    G CG  D YPEEFWNCAD++ITS   P                       P P        XXXXXXXXXX      ++ XXXXXXXXXXXXX                                    P  S                 S D   +    AAG    E A+ + +              D CS  WGQCGG  +EGP CC  GAECVE++E F  CVP
Sbjct:   75 PEQTAAEGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITSDGGPXXXXXXXXXXXXESEAPVDELIEPTPXXXXXXXXXXXXXXXXXXXXXXXXMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAELEPATPMDSPTEPIVATFAPSVPPPVSTDPDCEDPVGAAGYECEEMADCYSDVQRRQLVESCRPRGDRCSEGWGQCGGLHWEGPECCWPGAECVERNEHFHQCVP 475          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 4.150e-78
Identity = 121/205 (59.02%), Postives = 150/205 (73.17%), Query Frame = 2
Query:  218 PGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGRSPGPFP 832
            P   +A G+N+YG++N  YPVL T+AEG V+E+K+++STYHWGH+E F+C+  +LP G D  + QSCFN YP DRA DD    PIDP + GR+ +D PCRA+ETDQ +  GA  G+V TARYQLPE + C++  +QMVYYTGNSC H+GY EFNP SWPS CAP+K DWI    G CG  D YPEEFWNCADI+ITS   PG  P
Sbjct:  111 PEQTAAEGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGPGTAP 315          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 9.710e-77
Identity = 124/201 (61.69%), Postives = 154/201 (76.62%), Query Frame = 2
Query:  218 PGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGRSP 820
            P   +A G N YG +NS YPVLET+AEG ++E K+V+STYHWGH+E+F+C+A++LPGGPD T+ QSCFN++P DR  DD   SPIDP++ GR+ +D PCRA+ETDQ +  GA  G+V TAR++LPE ++CE+  +QMVYYTGNSC HQGY EFNP SWPS CAP K DWI    G CG  D YPEEFWNCADI+ITS   P
Sbjct:  106 PEQTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITSDGDP 306          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 8.150e-73
Identity = 124/248 (50.00%), Postives = 154/248 (62.10%), Query Frame = 2
Query:  125 PPRLLHERRAVAKWKLLRDRQDLCSLWSV-RRPGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGRSPGPFPRPNPAPQPTIP 865
            P R  +E+  +A+     ++ ++     +   P  +   G N Y   N  +P+L T+ EG V+EIK+ M+ YHWGH+E F+CNAD +   PDG   Q CFN YP  RA  D + SPIDPN+PGRY+VD  CR  ETDQ+ P GA+ G V+ A YQLPE LTC++  LQM YYTGNSC H GYEEF P SWPS CAP K DWI L+  +CG +  YPEEFW CAD AIT      P    NP P PT P
Sbjct:   51 PLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAIT------PDGMANPTPAPTEP 291          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 2.440e-71
Identity = 163/421 (38.72%), Postives = 202/421 (47.98%), Query Frame = 2
Query:  218 PGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHW-----------------------------------------------------------------------GHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITSGRSPGPFPRPNPAPQPTIPEXXXXXXXXXXEADSEPVSTXXXXXXXXXXXXXKRPGYPKKNYPSSSXXXXXXXXXXXXXXXYASEDSTYQSEPMAAG--EPAELFDEPVDSCSGNWGQCGGS-KFEGPNCCSAGAECVEKSEWFFHCVPAANN 1258
            P    A G N YGQ+NS YPV   ++EG ++EIK+V+STYHW                                                                       GHLE F+CNA+++   PDG + Q CFN +P DRA DDGDASPIDP+H GRY++D PCRA ETDQ    GA  G+V TARY+LP  LTC +  LQMVYYTGN+C H GY+EF+P+S P  CAP KEDW+  + G+CG D  YPEEFWNCADI ITS    G        P PT P             D E +S                P  P    P + XXXXXXXXXXX         S   + P A    +PAE+++           QCGG   ++G  CC   +ECVE ++ +  C PA   
Sbjct:  101 PEQTKAEGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWVRELPELSAQGFICGIAYLAFLVLVAAFAVVVFVFVVEEGEWKSAPTLYAHRAYEAVPGKYRALDYVHGGSGHLEFFICNAEDM-SDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSDEDGG-------GPAPTTPSP----------TDEEELSPTP------------EPSVPTVELPRTPXXXXXXXXXXXSGMESTPVPSVAPASPTATSCDDPAEVYE-----------QCGGDDSYDGRTCCVENSECVELADCYSECRPAETT 480          
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 1.300e-68
Identity = 146/384 (38.02%), Postives = 183/384 (47.66%), Query Frame = 2
Query:  218 PGTDSARGENRYGQDNSVYPVLETFAEGSVVEIKVVMSTYHWGHLEIFVCNADNLPGGPDGTLIQSCFNKYPFDRAADDGDASPIDPNHPGRYFVDLPCRAAETDQSMPAGAEIGEVVTARYQLPEDLTCEQ*TLQMVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEEFWNCADIAITS-GRSPGPFPRPNPAPQPTIPEXXXXXXXXXXEADSEPVSTXXXXXXXXXXXXXKRPGYPKKNYPSSSXXXXXXXXXXXXXXXYASEDSTYQSEPMA--------------AGE----------------PAELFDEPV--------DSCSGNWGQCGGSKFEGPNCCSAGAECVEKSEWFFHCVPAA 1252
            P  ++  G N Y   N  +  L++F  G V+E+ +VM+ YHWGH E FVCN D++   PDG   Q CFN +P  RA DDGDASPIDPN+PGRY+VD  CR  ET+QS  + +  G  +  RY LP D+ CE   LQMVYYTGN+C H GYEEFNP SWPS CAPNK DWI L+  +CG    YPEEFW C+D ++TS G +P   P P+P  +    +                                    +  + Y S                  A ED  Y+    A               GE                PA  F EP         D C+  WGQCGG  +EG  CC  G ECV  ++W+  C P A
Sbjct:  112 PEQNADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDD-PDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQS--SNSIEGYNIKMRYVLP-DIECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGSTPADAPMPDPVDEEDDEDSTDGGMEMYEYVGCYTDRQDDRILGDKLDSDLMTADFCYE-YCSEIGAAYMATQYAFECFCSADEDLDYERHGTAMCDKACRGDEGETCGGENAFDLYRIMPSMDLPTPATPFSEPEPEPTTPVSDGCAEAWGQCGGGNWEGSTCCMEGYECVANNDWYSQCRPTA 490          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14785.2856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM93_ECTSI8.830e-8461.08EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM92_ECTSI6.120e-8361.29EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FP25_ECTSI9.050e-8363.13EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI9.640e-8361.69EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE3.120e-7844.17CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMF4_ECTSI4.150e-7859.02EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KTY6_9PHAE9.710e-7761.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4D7_ECTSI8.150e-7350.00EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JI36_9PHAE2.440e-7138.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMS9_ECTSI1.300e-6838.02EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14785contigH-paniculata_contig14785:1262..6281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue5.4e-25
Seed eggNOG ortholog2880.D8LM92
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2726
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14785.2856.1prot_H-paniculata_contig14785.2856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14785 2727..4003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.9890258-UTR-H-paniculata_contig14785:1261..27261622929176.9890258-UTR-H-paniculata_contig14785:1261..2726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 1262..2726 -
1691480761.1197526-UTR-H-paniculata_contig14785:1261..27261691480761.1197526-UTR-H-paniculata_contig14785:1261..2726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 1262..2726 -
1622929177.1725507-UTR-H-paniculata_contig14785:4003..42851622929177.1725507-UTR-H-paniculata_contig14785:4003..4285Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 4004..4285 -
1691480761.1583288-UTR-H-paniculata_contig14785:4003..42851691480761.1583288-UTR-H-paniculata_contig14785:4003..4285Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 4004..4285 -
1622929177.51928-UTR-H-paniculata_contig14785:4611..47271622929177.51928-UTR-H-paniculata_contig14785:4611..4727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 4612..4727 -
1691480761.1706831-UTR-H-paniculata_contig14785:4611..47271691480761.1706831-UTR-H-paniculata_contig14785:4611..4727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 4612..4727 -
1622929177.5349586-UTR-H-paniculata_contig14785:5742..59311622929177.5349586-UTR-H-paniculata_contig14785:5742..5931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 5743..5931 -
1691480761.1798067-UTR-H-paniculata_contig14785:5742..59311691480761.1798067-UTR-H-paniculata_contig14785:5742..5931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 5743..5931 -
1622929177.5529227-UTR-H-paniculata_contig14785:6243..62811622929177.5529227-UTR-H-paniculata_contig14785:6243..6281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 6244..6281 -
1691480761.188579-UTR-H-paniculata_contig14785:6243..62811691480761.188579-UTR-H-paniculata_contig14785:6243..6281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14785 6244..6281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.0023623-CDS-H-paniculata_contig14785:2726..31781622929177.0023623-CDS-H-paniculata_contig14785:2726..3178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14785 2727..3178 -
1691480761.132551-CDS-H-paniculata_contig14785:2726..31781691480761.132551-CDS-H-paniculata_contig14785:2726..3178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14785 2727..3178 -
1622929177.1009386-CDS-H-paniculata_contig14785:3474..36481622929177.1009386-CDS-H-paniculata_contig14785:3474..3648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14785 3475..3648 -
1691480761.141459-CDS-H-paniculata_contig14785:3474..36481691480761.141459-CDS-H-paniculata_contig14785:3474..3648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14785 3475..3648 -
1622929177.1140146-CDS-H-paniculata_contig14785:3993..40031622929177.1140146-CDS-H-paniculata_contig14785:3993..4003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14785 3994..4003 -
1691480761.1495416-CDS-H-paniculata_contig14785:3993..40031691480761.1495416-CDS-H-paniculata_contig14785:3993..4003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14785 3994..4003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14785.2856.1

>prot_H-paniculata_contig14785.2856.1 ID=prot_H-paniculata_contig14785.2856.1|Name=mRNA_H-paniculata_contig14785.2856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MVYYTGNSCHHQGYEEFNPLSWPSECAPNKEDWITLEPGICGGDDHYPEE
FWNCADIAITSGRSPGPFPRPNPAPQPTIPEPEPTAPEPSPEADSEPVST
PEPVNPTPEPVAPKRPGYPKKNYPSSSSPEYPEHREKEYPSSYASEDSTY
QSEPMAAGEPAELFDEPVDSCSGNWGQCGGSKFEGPNCCSAGAECVEKSE
WFFHCVPAANN*
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mRNA from alignment at H-paniculata_contig14785:1262..6281-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14785.2856.1 ID=mRNA_H-paniculata_contig14785.2856.1|Name=mRNA_H-paniculata_contig14785.2856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5020bp|location=Sequence derived from alignment at H-paniculata_contig14785:1262..6281- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTCGAAAACATGGAGTTCTGCCCCCACTGTTTGCAGGCACAAGTCATG AAGAAATCCGGAGTATTGACATGAGAAACATTTTAGGTTGATACACACAC GTCGTCGTAGAGCAACGAAAATACGTTCGAGCCAGTGGTGTATGTAGCGC TTACTCTACTTGGCTTGTGGGAGGGAAGTAGACTTGTTGTGCGGAACAGT AGTAGAGTGTCCAGTAAGGTTTGCTGTATCTTCGACAAGCGCCCGAGATC CCCCCTTATTATTATCGTACTGATCGATTAGTACAAGCGGCTTTAAAACA TGAGCTACACATACTGACAACATGACCCCCCGCCGCCTCGATACATGCAG TCCAAAGGTCCCTCCGCTGTGCGCGCCCGCGCTATGGCCAAGACGGACCC GGCTGAGCTGGAGGCGTATGGTGGCGGCCGCTGGCCCCACCTCGACTCCT ACATGAGAGGAGAGCTGTTGCCAAATGGAAATTACTACGAGACCGACAAG ATCTCTGTTCGCTATGGTCTGTGCGGCGACCCGGGACAGGTGAGATACAT TGGAGTGAAGAAAATACCGGTTTTCGGGTGTGATTGCGAAAACGATTCGA GGTTCAATCACAATTGTACTATTTTGTGGTGCAGCGACTCCCACAGTTTC GTTTTTTCTTTTGTCTTCTTGGGACTACTACTCCCTATGCCCCATAAGTC CTAGGCCGTTAAGTTGTAGCTGTTCCGGATGACCACCGATTGCAAAACAG GCTTTTGTGTTGGATTTATTGGAATAGTTTACATTAAAAAACAAAGTAAA GTCAACTAATTTTGTTGGTAGGGAAGCTCTAGAATGGTTCCGAAAAAATG TAGCAAATAATATGACAATATCCGGTAATTTACCACCTGTGTCACATAAG TCTGCCCTATTAAGTTTTCCTTTCCACCCCAAAGTGTACACCCTCTGTAT GCACCACTCGGAAGCGTTGTGAGGGAAGGAGCTTAAGCCCACGGCAAGAT ACCAAGTACCAAGCCCCTGATCTTCAGGATGACCCCTGATTACAAAAATG AACCTTTGTGTTAGATTCCTTGAAACATTTTACATTGAAAAACAAAATCG AGTAATTTTGCCCATAGCTGAGCTCTAAAGTGGTTCCGAAAGAATGATAC TCAGAATAGGGTATGTTCAGCTCATTTACGGCTCGCATCTGAGGCGCATA TGCCCTATTCAGTGTGTCATTTTTTTGGGAACTATTTCAGAAGGAAATTT TCGATGAACATCTTCGACAGGTTGGTTGATTTATGCTGTAAAATATTCCG AGAGATTCAAACCCCAAATCCGTCTTGGAATCGGAATGTCATCCTTGTCA ACTTATGCGACAGAGGGAGTATAATATAGTGACAGTAAAGTTTAGGCGAG TTGTGCCCACAACAAAAACACAATATTTTTGGATGCACAGTAGTCTACGA CAGGCACGATCACCAGCCTTGCCAAAAGGCTGCCCACAAGACTCAACATA CCATTTGTCCATTGCTACGTCTCGCTCTGATCCTTTCCCGAACGCAAAAC ACAGACTCAGCCAGAGGCGAAAACAGGTACGGACAGGACAACAGCGTATA CCCCGTGCTTGAAACCTTCGCAGAGGGCTCGGTGGTGGAGATAAAGGTCG TCATGTCCACATACCACTGGGTAAGTCAGCTGCTATCTGAACATACGCAT GTAAGCTGCCGCTCGTCCATGCGTTATTGGTAAAGGTGGCGTCGGATCAA TGGGTTACAGCTCATCGTGTGTTTGCCTGAACTTGTACACCTTTATTATG CTAATGTGGGTGCGGGATACCACTGATTTACTTCGTGTCTCATGGTGCAG ATTTACATCGTATTTGTTGTTGGTAGTCCTAAACCCTGGATAATCCACTC TACTGAAACCATTCATATAGAACAATCAAATCAACGCCTGATATCCGGCT GAAGCAAATGGTCCTCCCACCCCCATTCCCGCTCACCCCACGACAGGGCC ACCTAGAAATCTTCGTCTGTAATGCCGACAACCTCCCAGGAGGACCTGAT GGCACCCTCATCCAGAGCTGTTTCAACAAGTACCCTTTCGACAGGGCGGC CGACGACGGTGATGCCAGCCCCATCGACCCCAACCACCCTGGCCGGTACT TTGTTGATCTTCCGTGCCGTGCCGCCGAGACCGACCAGTCCATGCCTGCT GGTGCCGAGATAGGGGAGGTGGTGACCGCGCGCTACCAGCTACCTGAGGA CCTTACTTGCGAACAATGAACCCTCCAGATGGTTTACTGTGAGTCAGTTC GAGCGATTTACGTCCGTGGGAGGTTGCGTGGTTTGTTTGATACTTCGGAG GTTAGAGAGACATTGGCTAATGTTCGAGTGGAGTGTACAGGGGGAAGCAG TCGGGGGTTGTGGCTATCGTGATATTGTAGGCCAGAACCGCGCGAATTCG AAAATTAGGACTATCCTCCCTTCCCTGCAAAGAACCCACAACGGCGCACA CACCATGATAGGATATCAATAGAAGTCAAGTCCAACCACGGGCAACAAAT ACTTTATGTTAATGAGACAGACTTGAAAATCCTCTCCGCTCATCTCCTAT CTTGTCACTCTCTGGCCCTTGCTCCAACCGTAGACACGGGAAACTCGTGC CACCACCAGGGATACGAAGAGTTCAACCCTCTCTCGTGGCCCAGCGAGTG CGCGCCCAACAAGGAGGACTGGATCACCCTCGAGCCCGGCATATGCGGTG GTGATGACCATTACCCCGAGGAGTTCTGGAACTGTGCCGACATCGCCATC ACCTCTGGTGCGTCTTGGGTGAACTAGAACAGTCCTCGTGAGGTTATCGA AGGCGACCACATGGAGGTGGGGATGGCACCCCATACTGCCGAACCGAACG GAGTTTTACGAGTCGTTGCGCTATCTCGGGGTAGGTTGGAAGTGTCGTGC TGCACGAGCGCCGTGAATGTACTTCTTAATTAAGGAGTGTTCTTCACAAC CACTCAAACACAACAACTGGCTTGATGTTCCGACACTTGGCAAAAACTAA CCGTCTTCCGACCCCTCTCCCTTCCACCTCCACCCCTCCCGAATACTATG CAGGCAGATCCCCCGGACCCTTTCCCAGGCCCAACCCAGCCCCTCAGCCC ACGATCCCCGAGCCGGAACCGACCGCACCGGAACCATCCCCCGAGGCTGA TTCTGAACCCGTGTCGACTCCCGAACCAGTAAACCCCACGCCCGAGCCGG TAGCCCCCAAGAGGCCGGGATATCCTAAGAAGAACTACCCGTCCTCTTCC TCCCCTGAGTATCCTGAACATCGTGAGAAGGAATACCCGTCTTCCTACGC TTCCGAAGACTCGACCTATCAATCAGAGCCCATGGCCGCGGGAGAGCCTG CCGAGCTGTTCGACGAACCCGTGGACAGCTGCTCTGGGAATTGGGGACAA TGTGGGGGGAGTAAGTTTGAAGGCCCCAATTGCTGTAGCGCTGGCGCTGA GTGCGTTGAGAAGAGCGAGTGGTTCTTCCATTGCGTTCCTGCTGCCAACA ATTAAGTATCGCTATTCTTACTTGAAGAGTAGTAGTGGACTCTCGATCTC CCGCGCGGTATTTAGGCAGTAGGCGTAAATCACCTAAAATCGATATACGT GCATGGAGGTCAAGAAAAAGCGCATGTGCAGCCTTGGTGTTGTTGTGGTG TTTTGTTTCTACAGGACTTTGATGATGTTTGGCATGGCTGCTGAAGGTGA TGAGTTGTGGTGTGCTATACTTGTGCTTGCTTGCATGGTGTGGTGAATGG GAGACGTTGCGTTGGTGTGTACCTGAAGCAGGCGTTCGTCAAAGGAATAG AACATGGCTGAGGGTGAAAAAGTTCGAGTTGTTGTGGTTACAAAATCGTT TGTTTGAGTGGATTTTACTGTGAGTGTTTGGTTGGTGTTTACGGTGCAGC AAAGAGTGAATGATTTGCCTGGATAATAAAGTAAATGTTCGGTTCTTCGC TTCTGCCCTGTATATATGAAAACGTACATGAATGCTGGAGAAGATGGGTG TTCGTTTGTGTGTCGCTTGATGGATTTTGGAGGGGGGGTGTCGCGATTCT ATAAAAACCGCGTACATCAGACATATCAACAACTTCTGCCATGGAGTAGA CGCCCGGCAGTGGAGCACTACTGTGCACAGTGGAGTATAGGCACAGTATA TACACTTGTATTATGAATTAGTGCTGTTCTAATGATATAAGGTATGATGT GTGCGTTTATCTTTGGTTATACTCCAAAGAGTATGTTGTTAGTTTGGATG TTCTGTGCTATTTCTTTAGTTAGGTTCGTAAGGCGGTCGTTGATCTGTGG TGCACGTATTCATGACTGGTTGTATCTTGGAAATAATACTCCTACCGTTG GTTGTAGATTTACGGTTAATGAGTCGCTACTGTGTTGCTGTTGTAAGTTC TTTGTGGGCATCCCGTAGAATTTGAGGTTCTCTCCACGACAAAACCCGTT GATGCTATCGTGAGAGGGGTAGGAAGGATGGGCAAGCTTGCATACTTTTG TTTTGTCAAGTACCCGTATTTCAAAGCTGCCCATGGTGGTATGAAGTTAG CATGGAGTCAATAATGTGTAATTGCATCTCGCTATCCGAAAAACCGTCAA CGGGTGGGTCGTACTCCGGAGTATATAGATGACATGGGTTTGGTATGATA GTGACTGCGGGCGTGACCTAGTTCATGACGGGCAAGGGATATCATAGAAC GGCCCACTGGAACACCCATGCCAGTACCGGAATACAGGGTTGAAGATTAG ATGACGTCTCGTTGTTTTACTTTTACAAGGTTCTACTACTGTTTCAGCTA TCAGTAGCTGTGCGCAGCTTGTGTGTTTAGGTAAGGCTTGCTAGATATTC TTCGACGTTACACATTTATCTATCTATCAAGATTGTCTTCTTAACTCGTA TCTCCAAGGGCAGAACACCGGTGTGTGTGTGTGTGTGTTGCGGCGGAAAG AGGACATCTATAAAGCAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig14785:1262..6281-

>mRNA_H-paniculata_contig14785.2856.1 ID=mRNA_H-paniculata_contig14785.2856.1|Name=mRNA_H-paniculata_contig14785.2856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig14785:1262..6281- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTACTATGGTTTACTACACGGGAAACTCGTGCCACCACCAGGGAT
ACGAAGAGTTCAACCCTCTCTCGTGGCCCAGCGAGTGCGCGCCCAACAAG
GAGGACTGGATCACCCTCGAGCCCGGCATATGCGGTGGTGATGACCATTA
CCCCGAGGAGTTCTGGAACTGTGCCGACATCGCCATCACCTCTGACACGG
GAAACTCGTGCCACCACCAGGGATACGAAGAGTTCAACCCTCTCTCGTGG
CCCAGCGAGTGCGCGCCCAACAAGGAGGACTGGATCACCCTCGAGCCCGG
CATATGCGGTGGTGATGACCATTACCCCGAGGAGTTCTGGAACTGTGCCG
ACATCGCCATCACCTCTGGCAGATCCCCCGGACCCTTTCCCAGGCCCAAC
CCAGCCCCTCAGCCCACGATCCCCGAGCCGGAACCGACCGCACCGGAACC
ATCCCCCGAGGCTGATTCTGAACCCGTGTCGACTCCCGAACCAGTAAACC
CCACGCCCGAGCCGGTAGCCCCCAAGAGGCCGGGATATCCTAAGAAGAAC
TACCCGTCCTCTTCCTCCCCTGAGTATCCTGAACATCGTGAGAAGGAATA
CCCGTCTTCCTACGCTTCCGAAGACTCGACCTATCAATCAGAGCCCATGG
CCGCGGGAGAGCCTGCCGAGCTGTTCGACGAACCCGTGGACAGCTGCTCT
GGGAATTGGGGACAATGTGGGGGGAGTAAGTTTGAAGGCCCCAATTGCTG
TAGCGCTGGCGCTGAGTGCGTTGAGAAGAGCGAGTGGTTCTTCCATTGCG
TTCCTGCTGCCAACAATTAAGCAGATCCCCCGGACCCTTTCCCAGGCCCA
ACCCAGCCCCTCAGCCCACGATCCCCGAGCCGGAACCGACCGCACCGGAA
CCATCCCCCGAGGCTGATTCTGAACCCGTGTCGACTCCCGAACCAGTAAA
CCCCACGCCCGAGCCGGTAGCCCCCAAGAGGCCGGGATATCCTAAGAAGA
ACTACCCGTCCTCTTCCTCCCCTGAGTATCCTGAACATCGTGAGAAGGAA
TACCCGTCTTCCTACGCTTCCGAAGACTCGACCTATCAATCAGAGCCCAT
GGCCGCGGGAGAGCCTGCCGAGCTGTTCGACGAACCCGTGGACAGCTGCT
CTGGGAATTGGGGACAATGTGGGGGGAGTAAGTTTGAAGGCCCCAATTGC
TGTAGCGCTGGCGCTGAGTGCGTTGAGAAGAGCGAGTGGTTCTTCCATTG
CGTTCCTGCTGCCAACAATTAA
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