mRNA_H-paniculata_contig14782.2855.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14782.2855.1
Unique NamemRNA_H-paniculata_contig14782.2855.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: A0A2D4BMS5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMS5_PYTIN)

HSP 1 Score: 90.5 bits (223), Expect = 7.450e-22
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   67 IVPPAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            +VPPAV+   HQGSKSDFG ++D+++ IE  GCS+DYY LEECLGE+DRDW KCQ  V+
Sbjct:    8 MVPPAVVAGLHQGSKSDFGEDLDIDDMIEKMGCSKDYYALEECLGEYDRDWTKCQTYVK 66          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: A0A8K1CK47_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK47_PYTOL)

HSP 1 Score: 84.3 bits (207), Expect = 1.380e-19
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   76 PAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVRIF 249
            P VI   H GS+SDFG +VD++E IE  GCS+DYY+LEECLGE+DRDW KCQ +V+  
Sbjct:    9 PPVIPGLHAGSQSDFGSDVDIDEMIEKMGCSKDYYKLEECLGEYDRDWTKCQVEVKAL 66          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: K3X4R7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4R7_GLOUD)

HSP 1 Score: 81.3 bits (199), Expect = 2.810e-18
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   55 PIAAIVPPAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            P  A VPP V+   H GS+SDFG ++D++  IE  GC++DYY+LEECLGE+DR+W KCQ QV+
Sbjct:   15 PAKAFVPP-VVPGLHAGSQSDFGDDIDIDAMIEKMGCAQDYYKLEECLGEYDRNWTKCQAQVK 76          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: H3HBJ3_PHYRM (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3HBJ3_PHYRM)

HSP 1 Score: 79.3 bits (194), Expect = 1.270e-17
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   73 PPAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            PP  +   H GSKSDFG ++DV+E IE + C  DYY+LE+CL + DRDWRKCQ+QV+
Sbjct:    8 PPVPVAGLHAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADFDRDWRKCQEQVK 64          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: M4BWI2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWI2_HYAAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.060e-17
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   61 AAIVPPAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            AA  PP  +   H GSKS+FG ++DV+E IE + C  DYY+LE+CL + DRDWRKCQ QV+
Sbjct:    4 AASKPPVPVLGLHAGSKSNFGEDLDVDELIERNRCHEDYYKLEDCLADFDRDWRKCQKQVK 64          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: A0A5D6XP60_9STRA (HECT domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP60_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.190e-17
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   55 PIAAIVPPAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            P+    PP V+   H GSKSDFG ++D+++ IE  GC++DYY+LE+CLGE DRDW KCQ QV+
Sbjct:  811 PMXXXXPPQVVAGLHAGSKSDFGADLDIDDMIERMGCAKDYYKLEDCLGEFDRDWTKCQAQVK 873          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: A0A3F2RVE9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVE9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.840e-17
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   76 PAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            P  I   H GSKSDFG ++DV+E IE + C  DYY+LE+CL ++DRDWRKCQ+QV+
Sbjct:   10 PVPIAGLHAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADYDRDWRKCQEQVK 65          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: A0A3M6VQQ0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQQ0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.260e-17
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   73 PPAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            PP  I   H GSKSDF  ++DVEE IE + C  DYY+LEECL ++DRDWRKCQ++V+
Sbjct:    8 PPVPIPGLHAGSKSDFREDLDVEELIERNRCHEDYYKLEECLADYDRDWRKCQEEVK 64          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: A0A662X263_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X263_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.120e-16
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   61 AAIVPPAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            AA   P  +   H GSKSDFG ++DV+E IE + C +DYY+LE+CL ++DRDW KCQ QV+
Sbjct:    3 AAPTAPTPLAGLHAGSKSDFGEDLDVDELIERNRCHKDYYKLEDCLADYDRDWTKCQQQVK 63          
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Match: G5AI08_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5AI08_PHYSP)

HSP 1 Score: 73.9 bits (180), Expect = 1.940e-15
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   76 PAVIFDQHQGSKSDFGGEVDVEEAIELSGCSRDYYQLEECLGEHDRDWRKCQDQVR 243
            P  +   H GSKSDFG ++DV+E IE + C  DYY+LE+CL + DRDW KCQ QV+
Sbjct:    9 PVPVAGLHAGSKSDFGEDLDVDELIERNRCHEDYYKLEDCLADFDRDWTKCQQQVK 64          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14782.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BMS5_PYTIN7.450e-2264.41Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CK47_PYTOL1.380e-1962.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X4R7_GLOUD2.810e-1857.14Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3HBJ3_PHYRM1.270e-1757.89Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
M4BWI2_HYAAE2.060e-1755.74Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A5D6XP60_9STRA2.190e-1755.56HECT domain-containing protein n=1 Tax=Pythium bra... [more]
A0A3F2RVE9_9STRA2.840e-1758.93Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3M6VQQ0_9STRA4.260e-1759.65Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A662X263_9STRA1.120e-1654.10Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
G5AI08_PHYSP1.940e-1555.36Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14782contigH-paniculata_contig14782:1343..1603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue3e-14
Seed eggNOG ortholog36331.EPrPI00000016298
KEGG koko:K18177
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Coiled-coil-helix-coiled-coil-helix domain containing 8. Source PGD
EggNOG OGs1MI3S@121069,2E4K7@1,2SBFX@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons1
Model size261
Cds size261
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.9427857-CDS-H-paniculata_contig14782:1342..16031622929176.9427857-CDS-H-paniculata_contig14782:1342..1603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14782 1343..1603 -
1691480761.1059241-CDS-H-paniculata_contig14782:1342..16031691480761.1059241-CDS-H-paniculata_contig14782:1342..1603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14782 1343..1603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14782.2855.1prot_H-paniculata_contig14782.2855.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14782 1343..1603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14782.2855.1

>prot_H-paniculata_contig14782.2855.1 ID=prot_H-paniculata_contig14782.2855.1|Name=mRNA_H-paniculata_contig14782.2855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MASGIGPPATSSPPSKSPPIAAIVPPAVIFDQHQGSKSDFGGEVDVEEAI
ELSGCSRDYYQLEECLGEHDRDWRKCQDQVRIFFPV*
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mRNA from alignment at H-paniculata_contig14782:1343..1603-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14782.2855.1 ID=mRNA_H-paniculata_contig14782.2855.1|Name=mRNA_H-paniculata_contig14782.2855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig14782:1343..1603- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCAGGCATAGGACCGCCAGCAACATCTTCACCACCATCAAAATC ACCACCGATAGCAGCTATAGTACCGCCTGCTGTTATCTTCGACCAACACC AAGGTTCCAAGAGTGATTTCGGGGGGGAGGTTGACGTGGAAGAAGCCATT GAGTTATCAGGTTGCTCTAGGGACTACTATCAACTGGAAGAGTGCTTGGG CGAGCACGACCGTGATTGGAGGAAGTGCCAGGACCAGGTTCGTATTTTTT TCCCCGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14782:1343..1603-

>mRNA_H-paniculata_contig14782.2855.1 ID=mRNA_H-paniculata_contig14782.2855.1|Name=mRNA_H-paniculata_contig14782.2855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig14782:1343..1603- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCAGGCATAGGACCGCCAGCAACATCTTCACCACCATCAAAATC
ACCACCGATAGCAGCTATAGTACCGCCTGCTGTTATCTTCGACCAACACC
AAGGTTCCAAGAGTGATTTCGGGGGGGAGGTTGACGTGGAAGAAGCCATT
GAGTTATCAGGTTGCTCTAGGGACTACTATCAACTGGAAGAGTGCTTGGG
CGAGCACGACCGTGATTGGAGGAAGTGCCAGGACCAGGTTCGTATTTTTT
TCCCCGTGTAGATGGCATCAGGCATAGGACCGCCAGCAACATCTTCACCA
CCATCAAAATCACCACCGATAGCAGCTATAGTACCGCCTGCTGTTATCTT
CGACCAACACCAAGGTTCCAAGAGTGATTTCGGGGGGGAGGTTGACGTGG
AAGAAGCCATTGAGTTATCAGGTTGCTCTAGGGACTACTATCAACTGGAA
GAGTGCTTGGGCGAGCACGACCGTGATTGGAGGAAGTGCCAGGACCAGGT
TCGTATTTTTTTCCCCGTGTAG
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