mRNA_H-paniculata_contig14771.2848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig14771.2848.1 vs. uniprot
Match: D7G6A8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A8_ECTSI) HSP 1 Score: 370 bits (949), Expect = 5.660e-123 Identity = 195/289 (67.47%), Postives = 228/289 (78.89%), Query Frame = 1
Query: 1 TSTYLYALMSDRVLLVQWTPDFEAP-PREVEDGENTT-GTNAANADRTSSLEEIFMDPGFFWSWERFEDRWTNYFGFSEEDLVINHVDVMENYNSLVCSNLKEGFMKDEKFIKVVNTEYFAPLLSVNKYSSRSVLEEIPSGDLFASLSNWLMRPVPTVSAAVQKFKERYFEDNYVIGIEMDVFTDTSDAGVMPDMQKELFFKEASDAIYRAKSNLTPDQQGIVALVVTDDEALLKPI-----KESFGAAGVVATLLPRGFGTTRILTEMQQAWLLGYGDVCIVSAVSNI 846
TSTYL+ALMS+RVLLVQWT E+ ++ G +TT G ++ + TSSLEEIF+DPGFFWSWERFEDRW NYFG++EEDL VDV+ NYNSLVC NLK FM D +FIK+ NTEYFAPLL+VN+++SR+VLEEIPS D FASLSNWLMRPVPTV+AAV++F+ERY EDNYVI +EMDV D++ M Q++LFFKEASDA YRAK NLTPDQQGIV LVVTDDE L+ ++S GAAGVVA PRGFGTTRILTE+QQAWLLGYGDV IVS S I
Sbjct: 24 TSTYLFALMSERVLLVQWTGSDESQGSNDIAAGNSTTAGESSGTSGSTSSLEEIFLDPGFFWSWERFEDRWLNYFGYAEEDLGSTVVDVIANYNSLVCDNLK-NFMGDTQFIKITNTEYFAPLLTVNQHASRTVLEEIPSVDTFASLSNWLMRPVPTVTAAVRRFRERYLEDNYVIVMEMDVLADSTGGSGMSAAQQQLFFKEASDASYRAKGNLTPDQQGIVVLVVTDDEEGLQSRVADLGQDSLGAAGVVAITGPRGFGTTRILTELQQAWLLGYGDVSIVSPASPI 311
BLAST of mRNA_H-paniculata_contig14771.2848.1 vs. uniprot
Match: A0A6H5JJN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN7_9PHAE) HSP 1 Score: 362 bits (929), Expect = 2.620e-118 Identity = 191/289 (66.09%), Postives = 219/289 (75.78%), Query Frame = 1
Query: 1 TSTYLYALMSDRVLLVQWT--PDFEAPPREVEDGENTTGTNAANADRTSSLEEIFMDPGFFWSWERFEDRWTNYFGFSEEDLVINHVDVMENYNSLVCSNLKEGFMKDEKFIKVVNTEYFAPLLSVNKYSSRSVLEEIPSGDLFASLSNWLMRPVPTVSAAVQKFKERYFEDNYVIGIEMDVFTDTSDAGVMPDMQKELFFKEASDAIYRAKSNLTPDQQGIVALVVTDDEALLKPI-----KESFGAAGVVATLLPRGFGTTRILTEMQQAWLLGYGDVCIVSAVSNI 846
TSTYL+ALMS+RVLLVQWT D + + TSSLEEIF+DPGFFWSWERFEDRW NYFG++EEDL VDV+ NYNSLVC NLK FM D +FIK+ NTEYFAPLL+VN+++ R+VLEEIPS D FASLSNWLMRPVPTV+AAV++F+ERYFEDNYVI +EMDV DT+ M Q++LFFKEASDA YRAK NLTPDQQG+V LVVTDDE L+ ++S GAAGVVA PRGFGTTRILTE+QQAWLLGYGDV IVS S I
Sbjct: 143 TSTYLFALMSERVLLVQWTGSDDSQGXXXXXXXXXXXXXXXXGTSGSTSSLEEIFLDPGFFWSWERFEDRWLNYFGYAEEDLGSTVVDVIANYNSLVCDNLK-NFMGDTQFIKITNTEYFAPLLTVNQHAGRTVLEEIPSVDTFASLSNWLMRPVPTVTAAVRRFRERYFEDNYVIVMEMDVLADTTGGSGMSAAQQQLFFKEASDASYRAKGNLTPDQQGVVVLVVTDDEEGLQSRVADLGQDSLGAAGVVAITGPRGFGTTRILTELQQAWLLGYGDVSIVSPASPI 430
BLAST of mRNA_H-paniculata_contig14771.2848.1 vs. uniprot
Match: A0A835YLY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY2_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.450e-77 Identity = 140/291 (48.11%), Postives = 189/291 (64.95%), Query Frame = 1
Query: 1 TSTYLYALMSDRVLLVQWTPDFEAP-PREVEDGENTT--GTNAA---NADRTSSLEEIFMDPGFFWSWERFEDRWTNYFGFSEEDLVINHVDVMENYNSLVCSNLKEGFMKDEKFIKVVNTEYFAPLLSVNKYSSRSVLEEIPSGDLFASLSNWLMRPVPTVSAAVQKFKERYFEDNYVIGIEMDVFTDTSDAGVMPDMQKELFFKEASDAIYRAKSNLTPDQQGIVALVVTDDEALLKPI-----KESFGAAGVVATLLPRGFGTTRILTEMQQAWLLGYGDVCIVSAVS 840
TS +L A++S R LLVQWT D+EAP P ++ G G NA + +R SSLEEIF+DPGF+WSW+RF RWT F + ++ I V+V +L C +L+ ++D+ F+KV YFAP L+VN + ++ ++P LFA LSNWL+RPVPTV AV +F ERYFEDNYVIG+EM ++ + G M Q++ FF+EA+DA YRA L +G++ LVVTDDE L+ +++ GAAG++A PRG GT RILTE+Q+ WLLGY DVCIVS S
Sbjct: 29 TSAFLLAMLSGRALLVQWTKDYEAPGPSDIGGGAGDWDYGANATAVPHDERRSSLEEIFLDPGFWWSWDRFMGRWTGRFERAAAEIDIVVVNVSAEVEALACGDLRRWRVRDQ-FVKVAGAHYFAPALAVNARHADALFAQLPRDQLFAYLSNWLLRPVPTVMTAVHRFAERYFEDNYVIGLEMSLWQALGEWGTMTAAQQKRFFQEAADATYRATQAL----RGVMILVVTDDEEALRARLKGQPQDALGAAGIIAITGPRGTGTRRILTELQEVWLLGYADVCIVSPAS 314
BLAST of mRNA_H-paniculata_contig14771.2848.1 vs. uniprot
Match: A0A7S2UWL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWL4_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.880e-8 Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 1
Query: 151 EIFMDPGFFWSWERFEDRWTNYFGFSEEDLV-INHVDVMENYNSLVCSNLKEGFMKDEKFIKVVNT-------EYFAPLLSVNKYSSRSVLEEIPSGDLFASLSNWLMRPVPTVSAAVQKFKER 498
E+F PGF W W ++ E DL I +D + + S +CS+L+ + K +++ +YFA L++ N + + EE+P LFA LSN+L+RP+P V+ AV +F+ER
Sbjct: 1 ELFEPPGFAWEWAALQEALGE-----EGDLSKIPTLDPVAQFQSTICSDLRT-WDSGSKVVRLSTNSADGGPHQYFAALIAANPVFT-FLQEELPYDQLFALLSNFLLRPLPVVTYAVSRFRER 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14771.2848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14771.2848.1 >prot_H-paniculata_contig14771.2848.1 ID=prot_H-paniculata_contig14771.2848.1|Name=mRNA_H-paniculata_contig14771.2848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp MSDRVLLVQWTPDFEAPPREVEDGENTTGTNAANADRTSSLEEIFMDPGFback to top mRNA from alignment at H-paniculata_contig14771:153..4818+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14771.2848.1 ID=mRNA_H-paniculata_contig14771.2848.1|Name=mRNA_H-paniculata_contig14771.2848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4666bp|location=Sequence derived from alignment at H-paniculata_contig14771:153..4818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14771:153..4818+ >mRNA_H-paniculata_contig14771.2848.1 ID=mRNA_H-paniculata_contig14771.2848.1|Name=mRNA_H-paniculata_contig14771.2848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig14771:153..4818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |