mRNA_H-paniculata_contig14757.2841.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE) HSP 1 Score: 211 bits (536), Expect = 1.680e-65 Identity = 94/194 (48.45%), Postives = 133/194 (68.56%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I+NT G+E F + S WRR + N PPEFW L+ +S+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ HQ GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E PA I+ MD+GERR + +G+ +GDG+ P LF Sbjct: 18 AGNDGQRFSHLKSIVNTKTGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF 211
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.030e-61 Identity = 95/194 (48.97%), Postives = 133/194 (68.56%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I+NT G+E F + S WRR + N PPEFW L+ QS+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ HQ GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E PA I+ MD+GERR + +G+ +GDG+ P LF Sbjct: 17 AGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF 210
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 204 bits (520), Expect = 6.010e-61 Identity = 92/194 (47.42%), Postives = 129/194 (66.49%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I+N G+E F + WRR + N PPEFW L+ QS+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ HQ GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E PA I+ MD+G RR + G+ +GDG+ P LF Sbjct: 108 AGNDGQRFSHLKSIVNNKIGREEFSNAMSPLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLF 301
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.360e-60 Identity = 95/194 (48.97%), Postives = 133/194 (68.56%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I+NT G+E F + S WRR + N PPEFW L+ QS+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ HQ GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E PA I+ MD+GERR + +G+ +GDG+ P LF Sbjct: 407 AGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF 600
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 212 bits (540), Expect = 3.920e-60 Identity = 96/194 (49.48%), Postives = 134/194 (69.07%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I NT G+E F + S WRR + NT PPEFW L+ QS+L ALGEKCRP+C+G T RR +AAG VRQ++PKLEE+ ++G+AV+GG + + A+ HQ G+W+I +C+NAFN+ KR AI+ + A L ++A+CY E PA +++MD+GERR + +G+ +GDG+ P LF Sbjct: 556 AGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLF 749
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE) HSP 1 Score: 209 bits (532), Expect = 4.270e-60 Identity = 94/194 (48.45%), Postives = 132/194 (68.04%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 A NDG RFSHL I+NT G+E F + S WRR + N PPEFW L+ QS+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ HQ GHW++ +C+NAFN+ KR AI+ + A + L ++A+CY E PA I+ MD+GERR + +G+ +GDG+ P LF Sbjct: 336 ADNDGQRFSHLTSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF 529
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 212 bits (539), Expect = 4.870e-60 Identity = 95/194 (48.97%), Postives = 133/194 (68.56%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I+NT G+E F + S WRR + N PPEFW L+ QS+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ HQ GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E PA I+ MD+GERR + +G+ +GDG+ P LF Sbjct: 386 AGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLF 579
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE) HSP 1 Score: 199 bits (505), Expect = 7.310e-60 Identity = 92/194 (47.42%), Postives = 129/194 (66.49%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I+NT G+E F + S WRR + N PPEFW L+ QS+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ Q GHW++ +C+N N+ KR AI+ + A L +A+CY E PA I+ MD+GERR + +G+ +GDG+ P LF Sbjct: 63 AGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCY-ELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLF 255
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 208 bits (530), Expect = 9.160e-60 Identity = 93/194 (47.94%), Postives = 133/194 (68.56%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I+NT G+E F + S WRR ++ + PPEFW L QS+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ HQ GHW++ +C+NAFN+ KR AI+ + + L ++A+CY E PA I+ MD+GERR + +G+ +GDG+ P LF Sbjct: 385 AGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF 578
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE) HSP 1 Score: 207 bits (527), Expect = 4.180e-59 Identity = 93/194 (47.94%), Postives = 131/194 (67.53%), Query Frame = 1 Query: 4 AGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELFLQSNLAALGEKCRPICVGSTMRRTLAAGVVRQYRPKLEEVNLSEWRYGIAVSGGTGLMDLRAKAYHQLGHWLIALNCTNAFNSVKRAAILEEIAIHTLGLTPFVAKCYGEKPADIIFQMDTGERRKMYSNTGIYEGDGLVPALF 585 AGNDG RFSHL+ I+NT G+E F + S WRR + N PPEFW L+ S+L ALGEKCRP+C+G T RR +AAG VR+++PKLEE+ ++G+AV+GG + + A+ HQ GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E PA I+ MD+GE R + +G+ +GDG+ P LF Sbjct: 393 AGNDGRRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKLSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLF 586 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14757.2841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14757.2841.1 >prot_H-paniculata_contig14757.2841.1 ID=prot_H-paniculata_contig14757.2841.1|Name=mRNA_H-paniculata_contig14757.2841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp AAGNDGLRFSHLQCILNTSAGKEGFGPVVGSFWRRSMEQHNTLPPEFWELback to top mRNA from alignment at H-paniculata_contig14757:5295..5879+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14757.2841.1 ID=mRNA_H-paniculata_contig14757.2841.1|Name=mRNA_H-paniculata_contig14757.2841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at H-paniculata_contig14757:5295..5879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14757:5295..5879+ >mRNA_H-paniculata_contig14757.2841.1 ID=mRNA_H-paniculata_contig14757.2841.1|Name=mRNA_H-paniculata_contig14757.2841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig14757:5295..5879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |