mRNA_H-paniculata_contig14754.2840.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14754.2840.1
Unique NamemRNA_H-paniculata_contig14754.2840.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14754.2840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14754contigH-paniculata_contig14754:1860..3124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size830
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14754.2840.1prot_H-paniculata_contig14754.2840.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14754 1860..3098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.016546-CDS-H-paniculata_contig14754:1859..24681622929175.016546-CDS-H-paniculata_contig14754:1859..2468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14754 1860..2468 -
1691480760.3295722-CDS-H-paniculata_contig14754:1859..24681691480760.3295722-CDS-H-paniculata_contig14754:1859..2468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14754 1860..2468 -
1622929175.0695996-CDS-H-paniculata_contig14754:2903..30981622929175.0695996-CDS-H-paniculata_contig14754:2903..3098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14754 2904..3098 -
1691480760.345447-CDS-H-paniculata_contig14754:2903..30981691480760.345447-CDS-H-paniculata_contig14754:2903..3098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14754 2904..3098 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.084585-UTR-H-paniculata_contig14754:3098..31241622929175.084585-UTR-H-paniculata_contig14754:3098..3124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14754 3099..3124 -
1691480760.3550367-UTR-H-paniculata_contig14754:3098..31241691480760.3550367-UTR-H-paniculata_contig14754:3098..3124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14754 3099..3124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14754.2840.1

>prot_H-paniculata_contig14754.2840.1 ID=prot_H-paniculata_contig14754.2840.1|Name=mRNA_H-paniculata_contig14754.2840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MKLSRNPSNPTSGSSSQEDHEMMEAMASAGLCDPQSMFDSNVERSHERSP
AEEAEEAVRAWRTAKLPATDRFINTGEGLAEFWREYGSSNFSLLSVVARS
VLGVPGCAAVAEHDFTEVHGGWTMADATNPARVADAEIAYGEVVLFLRAA
FRNIPENVPRLSAEQLQRAIPRRLCDPKMREELRDMGAGIDALGQEALGS
VGVGLVGLGYVDDRRGDEDEDDDVREDKADAYGEMRGEEVCDDDETEDEG
NVAEGEGPKRVSSSAEK*
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mRNA from alignment at H-paniculata_contig14754:1860..3124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14754.2840.1 ID=mRNA_H-paniculata_contig14754.2840.1|Name=mRNA_H-paniculata_contig14754.2840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1265bp|location=Sequence derived from alignment at H-paniculata_contig14754:1860..3124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAAGGCCGCGGTCGCAGCAAGAGGATGAAGCTTTCGCGGAACCCTTCT
AACCCTACCAGTGGCAGTTCTTCGCAGGAAGACCACGAGATGATGGAGGC
GATGGCGAGCGCGGGGTTGTGCGACCCGCAGAGCATGTTTGATAGTAACG
TGGAGAGGTCCCACGAGAGATCACCCGCCGAGGAAGCCGAGGAAGCGGTT
AGGGCTTGGCGTACCGCGAAGGTAAAGCTTGGGGGGGGACCGGGGGGGCA
TATTTGACGTTCCTAAGCTGTTGAACTGTTGATAGTGCGTCCTCGAGACG
GAGAAGTTAGACGGGAGGGAGGTGAGGGGTGTGTTCGTTTTATTCGAAAA
CAAGCGTTTTGACTTGATGCGGTGAAGGCTCTGTCATTTCGCTTTCGATC
ATGCGGGGAGGCGGCTGTGGTCATGCAGCAGTAGGCGGTTTGTCGCCAAC
CTTTATATTTTTGTCGGCGTTCGGTTTGAGTGGTTTGGATTGGTTTTCGA
GTACAACATTCATGATGAATCCGTGAGCAGGTGGCTGTGGTTCGCTACCA
TATGGGATCGTTTGCAAAACAGAGAAGTTGTGTTTTTCCCAGTGACCACA
ATCCGATCCCTGGGCACCCCAAAATCCCTTCACACCGTCTCACGATTGTT
GTACAGCTGCCTGCTACGGATCGTTTCATCAACACCGGCGAAGGCCTGGC
GGAGTTTTGGCGAGAGTACGGCTCGAGCAACTTCAGCCTCTTAAGCGTCG
TCGCGCGCAGCGTCTTGGGTGTGCCCGGTTGCGCCGCAGTCGCGGAACAT
GACTTCACCGAGGTGCATGGAGGATGGACGATGGCGGATGCCACTAACCC
TGCTCGTGTTGCTGATGCTGAAATAGCGTACGGGGAGGTGGTGCTATTCC
TCCGTGCCGCTTTCAGGAACATTCCTGAAAATGTTCCTCGTTTGTCGGCC
GAACAGTTGCAGCGGGCAATTCCGCGTCGATTGTGCGATCCGAAGATGAG
GGAAGAGCTTCGAGACATGGGTGCTGGAATTGATGCGCTGGGGCAGGAGG
CGTTGGGCTCTGTTGGTGTGGGGTTGGTTGGTCTTGGTTATGTTGATGAC
AGACGGGGGGATGAAGATGAAGATGATGATGTGCGTGAGGATAAGGCTGA
TGCTTATGGTGAAATGCGCGGTGAAGAGGTTTGTGACGACGATGAGACTG
AGGATGAAGGCAATGTTGCAGAGGGAGAGGGACCAAAAAGGGTTTCGTCG
TCAGCAGAGAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14754:1860..3124-

>mRNA_H-paniculata_contig14754.2840.1 ID=mRNA_H-paniculata_contig14754.2840.1|Name=mRNA_H-paniculata_contig14754.2840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at H-paniculata_contig14754:1860..3124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTTTCGCGGAACCCTTCTAACCCTACCAGTGGCAGTTCTTCGCA
GGAAGACCACGAGATGATGGAGGCGATGGCGAGCGCGGGGTTGTGCGACC
CGCAGAGCATGTTTGATAGTAACGTGGAGAGGTCCCACGAGAGATCACCC
GCCGAGGAAGCCGAGGAAGCGGTTAGGGCTTGGCGTACCGCGAAGATGAA
GCTTTCGCGGAACCCTTCTAACCCTACCAGTGGCAGTTCTTCGCAGGAAG
ACCACGAGATGATGGAGGCGATGGCGAGCGCGGGGTTGTGCGACCCGCAG
AGCATGTTTGATAGTAACGTGGAGAGGTCCCACGAGAGATCACCCGCCGA
GGAAGCCGAGGAAGCGGTTAGGGCTTGGCGTACCGCGAAGCTGCCTGCTA
CGGATCGTTTCATCAACACCGGCGAAGGCCTGGCGGAGTTTTGGCGAGAG
TACGGCTCGAGCAACTTCAGCCTCTTAAGCGTCGTCGCGCGCAGCGTCTT
GGGTGTGCCCGGTTGCGCCGCAGTCGCGGAACATGACTTCACCGAGGTGC
ATGGAGGATGGACGATGGCGGATGCCACTAACCCTGCTCGTGTTGCTGAT
GCTGAAATAGCGTACGGGGAGGTGGTGCTATTCCTCCGTGCCGCTTTCAG
GAACATTCCTGAAAATGTTCCTCGTTTGTCGGCCGAACAGTTGCAGCGGG
CAATTCCGCGTCGATTGTGCGATCCGAAGATGAGGGAAGAGCTTCGAGAC
ATGGGTGCTGGAATTGATGCGCTGGGGCAGGAGGCGTTGGGCTCTGTTGG
TGTGGGGTTGGTTGGTCTTGGTTATGTTGATGACAGACGGGGGGATGAAG
ATGAAGATGATGATGTGCGTGAGGATAAGGCTGATGCTTATGGTGAAATG
CGCGGTGAAGAGGTTTGTGACGACGATGAGACTGAGGATGAAGGCAATGT
TGCAGAGGGAGAGGGACCAAAAAGGGTTTCGTCGTCAGCAGAGAAATAAC
TGCCTGCTACGGATCGTTTCATCAACACCGGCGAAGGCCTGGCGGAGTTT
TGGCGAGAGTACGGCTCGAGCAACTTCAGCCTCTTAAGCGTCGTCGCGCG
CAGCGTCTTGGGTGTGCCCGGTTGCGCCGCAGTCGCGGAACATGACTTCA
CCGAGGTGCATGGAGGATGGACGATGGCGGATGCCACTAACCCTGCTCGT
GTTGCTGATGCTGAAATAGCGTACGGGGAGGTGGTGCTATTCCTCCGTGC
CGCTTTCAGGAACATTCCTGAAAATGTTCCTCGTTTGTCGGCCGAACAGT
TGCAGCGGGCAATTCCGCGTCGATTGTGCGATCCGAAGATGAGGGAAGAG
CTTCGAGACATGGGTGCTGGAATTGATGCGCTGGGGCAGGAGGCGTTGGG
CTCTGTTGGTGTGGGGTTGGTTGGTCTTGGTTATGTTGATGACAGACGGG
GGGATGAAGATGAAGATGATGATGTGCGTGAGGATAAGGCTGATGCTTAT
GGTGAAATGCGCGGTGAAGAGGTTTGTGACGACGATGAGACTGAGGATGA
AGGCAATGTTGCAGAGGGAGAGGGACCAAAAAGGGTTTCGTCGTCAGCAG
AGAAATAA
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