mRNA_H-paniculata_contig1475.2837.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1475.2837.1
Unique NamemRNA_H-paniculata_contig1475.2837.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: A0A6H5KQG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG3_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.380e-36
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 LKYQDTVRLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            ++Y DT RL +ADIPGLI+GAH+NRGLGHEFLRH+SRTRAL+FVVDAAGSEGR+P  DL  +++ELRLYD  LA KPA VVANK D
Sbjct:  188 VEYSDTTRLRVADIPGLIDGAHRNRGLGHEFLRHVSRTRALMFVVDAAGSEGRDPVDDLMSLKEELRLYDGELAGKPAFVVANKTD 273
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BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: D7G4Q4_ECTSI (Mtg2, mitochondrial Obg/CtgA-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q4_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.130e-35
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 LKYQDTVRLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            ++Y DT+RL +ADIPGLI+GAH+NRGLGHEFLRH+SRTRAL+FVVDAAGSEGR+P  DL  +++ELRLYD  LA KPA VVANK D
Sbjct:  306 VEYSDTIRLRVADIPGLIDGAHRNRGLGHEFLRHVSRTRALMFVVDAAGSEGRDPVDDLMSLKEELRLYDGELAGKPAFVVANKTD 391
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BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: A0A835YS70_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS70_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.870e-33
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 LKYQDTVRLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            L+Y D  ++++ADIPGLI+GAH NRGLGHEFLRHI RT+AL++VVD AG+EGR+P QDL  +R+EL LYDE L  KP+LVVANK+D
Sbjct:   90 LEYSDARQVTVADIPGLIDGAHLNRGLGHEFLRHIERTKALVYVVDVAGTEGRDPCQDLFSLREELFLYDETLPLKPSLVVANKID 175
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BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: A0A2A2XVF8_9BACT (GTPase Obg n=1 Tax=Spartobacteria bacterium AMD-G4 TaxID=1982325 RepID=A0A2A2XVF8_9BACT)

HSP 1 Score: 118 bits (295), Expect = 2.880e-30
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   22 RLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            R+++ADIPGLIEGAH+NRGLGHEFLRHI R + L FV+D AGSEGRNP +D + +R ELRLYD  L  KPA ++ANKMD
Sbjct:  215 RVTMADIPGLIEGAHENRGLGHEFLRHIVRCKTLFFVLDMAGSEGRNPVEDYQSLRKELRLYDPTLTSKPACIIANKMD 293
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BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: A0A2V2S702_9BACT (GTPase ObgE (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V2S702_9BACT)

HSP 1 Score: 112 bits (281), Expect = 5.660e-30
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:   22 RLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            R+++ADIPGLIEGAH N+GLGHEFLRHI R + L+FV+D AGSEGR+P +D R +R EL LYD  L+ KP  VVANKMD
Sbjct:   31 RVTVADIPGLIEGAHANKGLGHEFLRHIVRCKMLLFVLDMAGSEGRDPLEDFRTLRKELNLYDPTLSAKPWAVVANKMD 109
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BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: A0A838TD33_9BACT (50S ribosome-binding GTPase n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A838TD33_9BACT)

HSP 1 Score: 115 bits (289), Expect = 7.370e-30
Identity = 54/86 (62.79%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 LKYQDTVRLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            +++ D  R ++ADIPGLIEGAHQN GLGH FLRHI+R R L+FV+D AGSEGRNP +DL+ +R E+ LYD RL+++P  +VANKMD
Sbjct:  128 VEFDDYRRATVADIPGLIEGAHQNLGLGHAFLRHITRCRLLLFVLDMAGSEGRNPIEDLQHLRREIDLYDPRLSQRPWWIVANKMD 213
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BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: A0A840UXR0_9BACT (GTPase Obg n=1 Tax=Haloferula luteola TaxID=595692 RepID=A0A840UXR0_9BACT)

HSP 1 Score: 117 bits (292), Expect = 9.640e-30
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 LKYQDTVRLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            +++ D  R ++ADIPGLIEGAH+NRGLGHEFLRHI+R R L+FV+D AGSEGR+P  DL  +R E+R YDE LA  P ++VANKMD
Sbjct:  217 VEFGDFRRCTVADIPGLIEGAHENRGLGHEFLRHITRCRVLMFVIDMAGSEGRDPISDLEILRREVREYDEELAAFPWMIVANKMD 302
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BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: UPI001902D736 (GTPase ObgE n=1 Tax=Haloferula rosea TaxID=490093 RepID=UPI001902D736)

HSP 1 Score: 117 bits (292), Expect = 9.640e-30
Identity = 54/86 (62.79%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 LKYQDTVRLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            +++ D  R ++ADIPGLIEGAH+NRGLGHEFLRHI+R R L+FV+D AGSEGR+P  DL  +R E+R YDE L + P +V+ANKMD
Sbjct:  217 VEFGDFRRCTVADIPGLIEGAHENRGLGHEFLRHITRCRTLLFVIDMAGSEGRDPISDLEILRKEIREYDEELGDFPWIVLANKMD 302
[Close]
BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: A0A2V5QHF1_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5QHF1_9BACT)

HSP 1 Score: 114 bits (285), Expect = 1.020e-29
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   22 RLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            R ++ADIPGLIEGAH+  GLGHEFLRHI R R L+FVVDAAGSEGRNP +DL+ +R E+ LYD  L+ +P LVVANKMD
Sbjct:  104 RATVADIPGLIEGAHRGLGLGHEFLRHIMRCRILVFVVDAAGSEGRNPVEDLQNLRREIDLYDPTLSARPWLVVANKMD 182
[Close]
BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Match: A0A838I2N1_9BACT (50S ribosome-binding GTPase n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A838I2N1_9BACT)

HSP 1 Score: 112 bits (279), Expect = 1.460e-29
Identity = 52/86 (60.47%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 LKYQDTVRLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGSEGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD 258
            ++ +D  R +IADIPGLIEGAH+N GLGH+FLRHI+R R L+FV+DAAGSEGR+P +DL+ +R E+ LYD RL+++P  ++ANK+D
Sbjct:   15 VELEDYRRATIADIPGLIEGAHRNVGLGHDFLRHITRCRYLLFVLDAAGSEGRHPIEDLQSLRREVDLYDPRLSKRPWCILANKVD 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1475.2837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQG3_9PHAE2.380e-3673.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Q4_ECTSI1.130e-3573.26Mtg2, mitochondrial Obg/CtgA-like GTPase n=1 Tax=E... [more]
A0A835YS70_9STRA1.870e-3367.44P-loop containing nucleoside triphosphate hydrolas... [more]
A0A2A2XVF8_9BACT2.880e-3068.35GTPase Obg n=1 Tax=Spartobacteria bacterium AMD-G4... [more]
A0A2V2S702_9BACT5.660e-3067.09GTPase ObgE (Fragment) n=1 Tax=Verrucomicrobia bac... [more]
A0A838TD33_9BACT7.370e-3062.7950S ribosome-binding GTPase n=1 Tax=Chthoniobacter... [more]
A0A840UXR0_9BACT9.640e-3063.95GTPase Obg n=1 Tax=Haloferula luteola TaxID=595692... [more]
UPI001902D7369.640e-3062.79GTPase ObgE n=1 Tax=Haloferula rosea TaxID=490093 ... [more]
A0A2V5QHF1_9BACT1.020e-2969.62Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A838I2N1_9BACT1.460e-2960.4750S ribosome-binding GTPase n=1 Tax=Chthoniobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1475contigH-paniculata_contig1475:25484..25741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.1e-29
Seed eggNOG ortholog2880.D7G4Q4
Preferred nameMTG2
KEGG koko:K03979,ko:K10277,ko:K15334
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000313,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043576,GO:0043603,GO:0043604,GO:0044057,GO:0044065,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:0098798,GO:0140053,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.GTP-binding protein
EggNOG OGsCOG0536@1,KOG1489@2759
EC1.14.11.27,2.1.1.202
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016,ko03036
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.7890708-CDS-H-paniculata_contig1475:25483..257411622929174.7890708-CDS-H-paniculata_contig1475:25483..25741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1475 25484..25741 -
1691480760.2660356-CDS-H-paniculata_contig1475:25483..257411691480760.2660356-CDS-H-paniculata_contig1475:25483..25741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1475 25484..25741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1475.2837.1prot_H-paniculata_contig1475.2837.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1475 25484..25741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1475.2837.1

>prot_H-paniculata_contig1475.2837.1 ID=prot_H-paniculata_contig1475.2837.1|Name=mRNA_H-paniculata_contig1475.2837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
LKYQDTVRLSIADIPGLIEGAHQNRGLGHEFLRHISRTRALIFVVDAAGS
EGRNPAQDLRCVRDELRLYDERLAEKPALVVANKMD
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mRNA from alignment at H-paniculata_contig1475:25484..25741-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1475.2837.1 ID=mRNA_H-paniculata_contig1475.2837.1|Name=mRNA_H-paniculata_contig1475.2837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig1475:25484..25741- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAAAATATCAGGACACCGTCCGTCTCAGCATCGCCGACATCCCCGGGCT
CATCGAAGGGGCGCACCAAAATCGAGGGCTGGGGCACGAGTTTTTGAGAC
ACATCTCGAGGACGCGCGCCCTCATCTTCGTGGTGGATGCCGCTGGGTCG
GAGGGGAGGAACCCTGCCCAGGACTTGCGTTGCGTGAGGGACGAGCTGAG
GCTCTACGACGAAAGGCTGGCCGAGAAGCCGGCGCTGGTCGTGGCGAATA
AGATGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1475:25484..25741-

>mRNA_H-paniculata_contig1475.2837.1 ID=mRNA_H-paniculata_contig1475.2837.1|Name=mRNA_H-paniculata_contig1475.2837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig1475:25484..25741- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAAAATATCAGGACACCGTCCGTCTCAGCATCGCCGACATCCCCGGGCT
CATCGAAGGGGCGCACCAAAATCGAGGGCTGGGGCACGAGTTTTTGAGAC
ACATCTCGAGGACGCGCGCCCTCATCTTCGTGGTGGATGCCGCTGGGTCG
GAGGGGAGGAACCCTGCCCAGGACTTGCGTTGCGTGAGGGACGAGCTGAG
GCTCTACGACGAAAGGCTGGCCGAGAAGCCGGCGCTGGTCGTGGCGAATA
AGATGGACCTAAAATATCAGGACACCGTCCGTCTCAGCATCGCCGACATC
CCCGGGCTCATCGAAGGGGCGCACCAAAATCGAGGGCTGGGGCACGAGTT
TTTGAGACACATCTCGAGGACGCGCGCCCTCATCTTCGTGGTGGATGCCG
CTGGGTCGGAGGGGAGGAACCCTGCCCAGGACTTGCGTTGCGTGAGGGAC
GAGCTGAGGCTCTACGACGAAAGGCTGGCCGAGAAGCCGGCGCTGGTCGT
GGCGAATAAGATGGAC
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