mRNA_H-paniculata_contig14748.2835.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14748.2835.1
Unique NamemRNA_H-paniculata_contig14748.2835.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14748.2835.1 vs. uniprot
Match: D7FVT9_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.040e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   64 QEVEKPVVLDELFRKTQAKPSLYWLPLSEEEVGERKAKMKEDGVGPRNIPMPADYI 231
            +E  +P++LD++FRKT AKPSLYWLPLSEEEVG RK KM+EDGVGPR  PMPA++I
Sbjct:  560 EEEAEPIILDDMFRKTDAKPSLYWLPLSEEEVGLRKKKMEEDGVGPRTTPMPAEHI 615
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BLAST of mRNA_H-paniculata_contig14748.2835.1 vs. uniprot
Match: A0A6H5JTQ3_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.420e-18
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   64 QEVEKPVVLDELFRKTQAKPSLYWLPLSEEEVGERKAKMKEDGVGPRNIPMPADYISGLDVGG 252
            +E  +P++LD++FRKT AKPSLYWLPLSEEEVG RK KM+E+GVGPR  PMPA++I     GG
Sbjct:  596 EEEAEPIILDDMFRKTGAKPSLYWLPLSEEEVGLRKKKMEEEGVGPRTTPMPAEHIEAAVKGG 658
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BLAST of mRNA_H-paniculata_contig14748.2835.1 vs. uniprot
Match: A0A7S3QPV0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QPV0_DUNTE)

HSP 1 Score: 51.2 bits (121), Expect = 6.180e-6
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   88 LDELFRKTQAKPSLYWLPLSEEEVGERKAKMKEDGVGPRNIPMPADYISGLDVGGHRNGG 267
            LD LFRKT AKP++YWLPL+EEEV  +K + +E G   +  P P     G+D   HR+ G
Sbjct:   48 LDSLFRKTAAKPAIYWLPLTEEEVARKKRREREFG---QREPPPG---MGMDPRDHRDFG 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14748.2835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVT9_ECTSI1.040e-1871.43SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JTQ3_9PHAE1.420e-1865.08SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3QPV0_DUNTE6.180e-648.33Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14748contigH-paniculata_contig14748:4416..6094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue5.6e-16
Seed eggNOG ortholog2880.D7FVT9
Preferred nameACIN1
KEGG koko:K01278,ko:K12875,ko:K13781,ko:K15559,ko:K16519,ko:K18732
KEGG TC2.A.3.8.6
KEGG Pathwayko03013,ko03015,ko03040,ko04974,map03013,map03015,map03040,map04974
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000335,GO:0000337,GO:0000375,GO:0000377,GO:0000398,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003006,GO:0003674,GO:0003676,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006323,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008406,GO:0009653,GO:0009887,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010528,GO:0010529,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022411,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030261,GO:0030262,GO:0030263,GO:0030334,GO:0031323,GO:0031324,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033119,GO:0034101,GO:0034641,GO:0035262,GO:0040012,GO:0042592,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045655,GO:0045657,GO:0045910,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050684,GO:0050686,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051270,GO:0051276,GO:0060255,GO:0061458,GO:0061574,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097194,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1903311,GO:1903312,GO:1903706,GO:1903708,GO:2000026,GO:2000145
EggNOG free text desc.apoptotic chromosome condensation
EggNOG OGsKOG2416@1,KOG2416@2759
EC3.4.14.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03019,ko03021,ko03041,ko04090,ko04147
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.152278-CDS-H-paniculata_contig14748:4416..45271622929174.152278-CDS-H-paniculata_contig14748:4416..4527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14748 4417..4527 -
1691480760.18533-CDS-H-paniculata_contig14748:4416..45271691480760.18533-CDS-H-paniculata_contig14748:4416..4527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14748 4417..4527 -
1622929174.1722875-CDS-H-paniculata_contig14748:5938..60941622929174.1722875-CDS-H-paniculata_contig14748:5938..6094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14748 5939..6094 -
1691480760.199809-CDS-H-paniculata_contig14748:5938..60941691480760.199809-CDS-H-paniculata_contig14748:5938..6094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14748 5939..6094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14748.2835.1prot_H-paniculata_contig14748.2835.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14748 4417..6094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14748.2835.1

>prot_H-paniculata_contig14748.2835.1 ID=prot_H-paniculata_contig14748.2835.1|Name=mRNA_H-paniculata_contig14748.2835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
AGNGRGRGGRLDEAVGQKQQQQEVEKPVVLDELFRKTQAKPSLYWLPLSE
EEVGERKAKMKEDGVGPRNIPMPADYISGLDVGGHRNGG
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mRNA from alignment at H-paniculata_contig14748:4416..6094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14748.2835.1 ID=mRNA_H-paniculata_contig14748.2835.1|Name=mRNA_H-paniculata_contig14748.2835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1679bp|location=Sequence derived from alignment at H-paniculata_contig14748:4416..6094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGCAACGGGAGGGGCAGGGGAGGGAGGTTGGATGAGGCGGTGGGGCA
AAAGCAACAGCAGCAGGAAGTGGAGAAGCCGGTTGTGCTGGACGAGCTGT
TCAGGAAGACCCAGGCGAAGCCTTCCCTATATTGGTTGCCGCTCTCGGAG
GAGGAGGTGGGAGAGAGGGCTCGCGTTGTGATGGACTGTTTTCCCTAAAA
TATATCATTTTTATACAGCTTAATAAGGTTTGGTCTTTACGTTTATGTTT
GCAGAACAGTTTTGCCCTGAAAAATCTTTGATGGTATTTTCAATTATGCT
TGGCCCCTTCGTGTATATCCGCGACTGCTGGCACAAAAACAGTCGAGACG
GTGTCCTCGATTCAAACGGACGCTTCGCGAAGCCTTCGATCCGTCGGGCC
AGAAAAACTGAGGAGTGCAGCTGGTTGATTGGTGGAATGTATGCCGAGAT
AATCGACGGACGATTTGATTTGTGACCATGATGTGGGATGATAGCCATGG
CGTAAACGGTAGTGTCATACTGCCATGACGTATCACGTTATTGTATAGTA
CCTACCCCCCCCCCTGAGTGTTGGCGTTTCTCAACTCGATTGTTTTTTCT
CGCGGAAGATCTTAAGGGACACAATTTTCGGTGCACTAATGAAGAGCTCC
ACATTTCTTGAGATATTCGAATACAAACAGTGTTCAACATTCATGACGGG
GGGAGTTAGGGGGGGGTACTCGTGCGAGCGCCCCCCTTTGTCTCTCGACT
GTTGACCTCACATCTGTACAATGCCGCGATGGAGCACACCGGGTTTTCGC
TGGCCACTCCATGTTCCATAAGAGTGATACTAGCCATCAGTCACCATCAT
TGTGTTGCTACTCCAACAAGATTCTCCCATGACATTTTGGTTATCTCGGG
TAACCACATGTTGCACATTCGGCTGGGGTGACTATACCCCTAAGTATAGC
ACGGGAGTTTGATTTCGCGCGCACGTGAATACAACGTCGCGCGACACACG
GTGAAGATTTCACTTCGTGTGTGAAACACTGAGGGTGTTACCTGCTTTTT
TAATCACTTGAGTACGGCCATGGGTATTGCTTCTCTGGGGCATTACACTT
GCCAGTTAAGCAGACATCCTACGGGGTGCGAACTCGGACTCCTCGACCGA
GGTCAACAAGCTGATAGGGTAGCCGCATGACCGGTTTCTGGTGGGAAGGG
GGCATGGCCTATATAGGGTGGTGGCCGCAACCCTCGTCTCCTGACGTAAA
GTATCAGCTCAATCCTGACACGCTGTATTCCCGAGAAGCTCCGTGTGGCG
CCCGGACCTGTGTTTTTGTGATGTTGCCGTCGCTGCTGCTGCTGCTGCTT
CCGCTGGAAAAAATTATGCATGTAGTTATCAAGTAGATACCGTGCTGAAA
TATTTAACTTGCAGTGTTTTCGTCGCCGGGGCCAATTGTAACAAAAATGA
GCAAGAAGGTCGTTTGTTCTTTTACCCCAAGGCAGCTGACCGTACGTTTT
TCCCTGTTATCCATCCATCCACCCGACCCTCCCCCCCTCCTTCGCTCCAT
AATGATCGATTTTTCAGGTTGGAGAGCGGAAAGCGAAAATGAAAGAAGAT
GGCGTCGGCCCGCGCAACATACCAATGCCCGCCGACTACATTTCTGGCCT
GGACGTGGGAGGACATCGCAACGGGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14748:4416..6094-

>mRNA_H-paniculata_contig14748.2835.1 ID=mRNA_H-paniculata_contig14748.2835.1|Name=mRNA_H-paniculata_contig14748.2835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig14748:4416..6094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGCAACGGGAGGGGCAGGGGAGGGAGGTTGGATGAGGCGGTGGGGCA
AAAGCAACAGCAGCAGGAAGTGGAGAAGCCGGTTGTGCTGGACGAGCTGT
TCAGGAAGACCCAGGCGAAGCCTTCCCTATATTGGTTGCCGCTCTCGGAG
GAGGAGGCTGGCAACGGGAGGGGCAGGGGAGGGAGGTTGGATGAGGCGGT
GGGGCAAAAGCAACAGCAGCAGGAAGTGGAGAAGCCGGTTGTGCTGGACG
AGCTGTTCAGGAAGACCCAGGCGAAGCCTTCCCTATATTGGTTGCCGCTC
TCGGAGGAGGAGGTTGGAGAGCGGAAAGCGAAAATGAAAGAAGATGGCGT
CGGCCCGCGCAACATACCAATGCCCGCCGACTACATTTCTGGCCTGGACG
TGGGAGGACATCGCAACGGGGGAGTTGGAGAGCGGAAAGCGAAAATGAAA
GAAGATGGCGTCGGCCCGCGCAACATACCAATGCCCGCCGACTACATTTC
TGGCCTGGACGTGGGAGGACATCGCAACGGGGGA
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