mRNA_H-paniculata_contig14747.2834.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14747.2834.1
Unique NamemRNA_H-paniculata_contig14747.2834.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: A0A6H5KWG9_9PHAE (ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG9_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 4.590e-105
Identity = 156/181 (86.19%), Postives = 171/181 (94.48%), Query Frame = 1 
Query:    1 KVGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVLGGETVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVNTCK 543
            +VG+KVMEGCCKTLKPVVLELGGKDPFVVCDD D+E VMPF+MKGSFFNAGQNCIGVERV+VYEKVYD FVARVTELAS LRQGPVLG E+VDCGAMVMPAQLDIVQ LV+DAVS+GAKVTTGGSRNM++PNGLFY PTVLAGVT DMKIAQEEVFGPVM+IIKVPG+SDE CI+M+N+ K
Sbjct:  301 EVGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVDMERVMPFVMKGSFFNAGQNCIGVERVYVYEKVYDRFVARVTELASKLRQGPVLGPESVDCGAMVMPAQLDIVQDLVNDAVSKGAKVTTGGSRNMEHPNGLFYLPTVLAGVTPDMKIAQEEVFGPVMSIIKVPGDSDEACIKMINSSK 481
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: D7G3G9_ECTSI (Bifunctional Aldehyde Dehydrogenase/Phosphoglucomutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G9_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 5.820e-102
Identity = 155/181 (85.64%), Postives = 170/181 (93.92%), Query Frame = 1 
Query:    1 KVGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVLGGETVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVNTCK 543
            +VG+KVMEGCCKTLKPVVLELGGKDPFVVCDD D+E VMPF+MKGSFFNAGQNCIGVERV+VYEKVYD FVARVTELAS LRQGPVLG E+VDCGAMVMPAQLDIVQ LVDDAVS+G KVTTGGSRNM++P+GLFY PTVLAGVT DMKIAQEEVFGPVMTI+KVPG+SDE CI+M+N+ K
Sbjct:  301 EVGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVDIERVMPFVMKGSFFNAGQNCIGVERVYVYEKVYDRFVARVTELASKLRQGPVLGPESVDCGAMVMPAQLDIVQDLVDDAVSKGGKVTTGGSRNMEHPDGLFYLPTVLAGVTPDMKIAQEEVFGPVMTIMKVPGDSDETCIKMINSSK 481
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: A0A7S2XYE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE7_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.990e-75
Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 1 
Query:    4 VGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVLGGETVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVNTCK 543
            VG+KVM G    LKPV+LELGGKDP V+C+DA +  V+P +M+G + N GQNC GVERV+VYE +Y+ F+       + LRQGPVLG + VDCGAMVMPAQ+D++QALVDDAVS+GA++  GGSRN +   G+FYRPT+LA VT DMKIA+EEVFGPVM ++KVP NSDE+ IEMVN CK
Sbjct:  316 VGRKVMAGAAPLLKPVILELGGKDPLVLCEDASLRDVLPMVMRGCYQNCGQNCCGVERVYVYEAIYEEFLDMAQREVNQLRQGPVLGKDPVDCGAMVMPAQIDLIQALVDDAVSKGARLLAGGSRNKELEPGIFYRPTILADVTHDMKIAKEEVFGPVMCVLKVPENSDEKAIEMVNDCK 495
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: A0A835YP03_9STRA (Aldehyde/histidinol dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP03_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.790e-71
Identity = 113/179 (63.13%), Postives = 134/179 (74.86%), Query Frame = 1 
Query:    4 VGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVLGGETVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVNTC 540
            VG+KV       LKPV+LELGGKDP VVCDDA V +V+PF ++G F N GQNC GVERV+ Y  VYD F A      + LRQGP LG + VDCGAMVMPAQLDIVQALVDDAV++GA++  GG RN ++P+GLFY PTVLA VT DM+IA+EEVFGPVM I+KVP +SD     +VN C
Sbjct:  228 VGRKVAAAAAPLLKPVILELGGKDPMVVCDDARVAAVLPFALRGVFQNCGQNCCGVERVYAYAAVYDAFCAAAARAVAALRQGPALGRDDVDCGAMVMPAQLDIVQALVDDAVAKGARLLAGGRRNARFPDGLFYEPTVLADVTHDMRIAREEVFGPVMCILKVPDDSDATAAALVNDC 406
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: A0A4D9CS12_9STRA (Aldedh domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CS12_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.070e-70
Identity = 113/181 (62.43%), Postives = 135/181 (74.59%), Query Frame = 1 
Query:    4 VGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVLGG-ETVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVNTCK 543
            +G+KVMEG    LKPV+LELGGKDP VV +DAD+E ++P  MKG+FFN GQNC GVER +VYE V+D FVA V +  + LRQGP L G E VDCGA+VMP Q++I+Q LVD AV  GAKV  GG  +  YP G F++PTVL  VT +M IAQEEVFGPVMTIIKVP + D  C+ MVN CK
Sbjct:  299 IGKKVMEGAAPHLKPVILELGGKDPMVVMEDADIEGLVPMAMKGAFFNCGQNCCGVERFYVYESVHDRFVAEVVKRVAALRQGPPLSGAERVDCGALVMPRQVEIIQGLVDQAVDEGAKVAVGGKPHPGYPQGNFFQPTVLVNVTNEMAIAQEEVFGPVMTIIKVPDDDDATCLRMVNACK 479
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: A0A6S8YE02_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YE02_9STRA)

HSP 1 Score: 213 bits (542), Expect = 9.030e-63
Identity = 106/183 (57.92%), Postives = 132/183 (72.13%), Query Frame = 1 
Query:    4 VGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVL---GGE-TVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVNTC 540
            VG+ VMEGC K LKPV+LELGGKDP V CDD  ++ V+P+ M+G F N GQNC GVER+FVYE +   F+  V      LRQG  L   G +  VDCGAMVM AQ+D +QALVDDAVS+GA +  GG RN +  +G FY PT+L+GVT DMKI+ EEVFGP+M I+ VP + DE+C+EM+N C
Sbjct:  307 VGRLVMEGCSKNLKPVILELGGKDPMVFCDDVKIKDVVPWAMRGCFQNCGQNCCGVERLFVYESIVTEFIDTVLPRVKGLRQGVPLKTCGSDGDVDCGAMVMDAQMDHIQALVDDAVSKGATLHCGGKRNDKL-DGQFYVPTLLSGVTADMKISTEEVFGPIMCIVTVPNDDDEKCVEMINAC 488
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: A0A7S1R4W9_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R4W9_ALECA)

HSP 1 Score: 204 bits (520), Expect = 3.690e-61
Identity = 95/179 (53.07%), Postives = 122/179 (68.16%), Query Frame = 1 
Query:    4 VGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVLGGETVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVNTC 540
            VG++VME   K L PV+LELGGKDPFVVCDD D + +   +++G+F N GQNC G ER  VY+KVYD+F   V+ L   LRQ P L  E VDCGA V P  L+  +  VDDAV +GA++  GG RN  +P G F+ PTVLA VT DM IA+EE FGP+++I +V GNSD+  + + N C
Sbjct:  137 VGKRVMEAAAKHLTPVILELGGKDPFVVCDDCDPKGLAQLVVRGAFQNMGQNCAGPERFIVYDKVYDSFCEEVSSLVKTLRQAPPLSSEYVDCGACVHPPSLEGYRRFVDDAVQKGARLLAGGGRNKDFPEGQFFEPTVLADVTEDMLIAKEETFGPILSIFRVKGNSDDEAVRLANAC 315
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: A0A7R9UB35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB35_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.500e-60
Identity = 97/179 (54.19%), Postives = 126/179 (70.39%), Query Frame = 1 
Query:    4 VGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVLGGETVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVNTC 540
            VG+ VM+G    LKPV+LELGGKDP V+C+DA +  V+P  M+G F NAGQNC G+ER+  YE + + FVA V  +   LRQGP LG    D GAMVMP Q++I+Q LVDDAV++GAK+  GG +N  + +G FY PT+L GV   M+IA EEVFGPVM ++ VP N DE  +E++N C
Sbjct:  303 VGRMVMKGAAPHLKPVILELGGKDPLVICEDAKLGEVVPMAMRGCFQNAGQNCCGIERILCYEGIQEEFVATVKPMIEKLRQGPALGHGLFDVGAMVMPRQIEIIQELVDDAVAKGAKLLVGGRQNKDW-DGNFYLPTLLTGVNKTMRIANEEVFGPVMAVMTVPNNDDELAVEIINDC 480
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BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: B7FZZ1_PHATC (Aldehyde dehydrogenase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZZ1_PHATC)

HSP 1 Score: 204 bits (520), Expect = 2.790e-60
Identity = 100/181 (55.25%), Postives = 128/181 (70.72%), Query Frame = 1 
Query:    4 VGQKVMEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVL----GGETVDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVN 534
            +G+KVME     LKPV+LELGGKD  VV +D  ++ V+P++M+G F N GQNC+G+ERV VYE ++D FV  VT     LRQG  L        VDCG+MVM  QLD++QALVDDAV +GA V TGG R +   NG FY PT+L GVT +M++ QEEVFGPVMTI++VP + DE C+ +VN
Sbjct:  218 IGKKVMETASHVLKPVILELGGKDAMVVMEDCQLKDVVPWVMRGCFQNCGQNCVGIERVLVYESLHDAFVEEVTAQVKALRQGIPLETCGSSADVDCGSMVMDGQLDLIQALVDDAVKQGATVVTGGKRAVN-GNGQFYEPTILTGVTAEMRVFQEEVFGPVMTIVRVPKDDDEACLRLVN 397
[Close]
BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Match: A0A7S4IUW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUW3_9STRA)

HSP 1 Score: 196 bits (499), Expect = 4.630e-60
Identity = 98/180 (54.44%), Postives = 128/180 (71.11%), Query Frame = 1 
Query:   19 MEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIGVERVFVYEKVYDTFVARVTELASNLRQGPVLG--GET--VDCGAMVMPAQLDIVQALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVFGPVMTIIKVPGNSDERCIEMVN-TCK 543
            MEG  K LKPV+LELGGKDP V CDD  ++ V+P+ M+G F N+GQNC GVER+FVYE ++D F+ ++      LRQG  L   G T  VDCG+M+M  Q+DIVQ L+DDAV +GA +  GG RN     G FY PTVL+GVT  M+I++EEVFGPVM I++VP + D+ C+ +VN TC+
Sbjct:    1 MEGASKNLKPVILELGGKDPMVFCDDVKIKDVIPWAMRGCFQNSGQNCCGVERLFVYESIHDEFLDKILPKVKALRQGVPLATCGNTGDVDCGSMIMEGQMDIVQELIDDAVQKGATLHCGGRRNPAL-KGQFYEPTVLSGVTPSMRISREEVFGPVMCIVEVPNDDDDACVALVNDTCE 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14747.2834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWG9_9PHAE4.590e-10586.19ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G3G9_ECTSI5.820e-10285.64Bifunctional Aldehyde Dehydrogenase/Phosphoglucomu... [more]
A0A7S2XYE7_9STRA2.990e-7563.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YP03_9STRA1.790e-7163.13Aldehyde/histidinol dehydrogenase n=1 Tax=Tribonem... [more]
A0A4D9CS12_9STRA1.070e-7062.43Aldedh domain-containing protein n=2 Tax=Monodopsi... [more]
A0A6S8YE02_9STRA9.030e-6357.92Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1R4W9_ALECA3.690e-6153.07Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7R9UB35_9STRA2.500e-6054.19Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
B7FZZ1_PHATC2.790e-6055.25Aldehyde dehydrogenase n=1 Tax=Phaeodactylum trico... [more]
A0A7S4IUW3_9STRA4.630e-6054.44Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14747contigH-paniculata_contig14747:583..6168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.5
Seed ortholog evalue6.1e-83
Seed eggNOG ortholog2880.D7G3G9
Preferred nameMSC7
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K10661
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko04141,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map04141
KEGG ModuleM00135
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016620,GO:0016903,GO:0022402,GO:0022414,GO:0031224,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046483,GO:0048285,GO:0051321,GO:0055114,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0140013,GO:1901360,GO:1903046
EggNOG free text desc.aldehyde dehydrogenase (NAD) activity
EggNOG OGsCOG1012@1,COG1109@1,KOG1220@2759,KOG2454@2759
EC1.2.1.3,2.3.2.27
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Exons4
Model size546
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14747.2834.1prot_H-paniculata_contig14747.2834.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14747 601..6168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.8350167-UTR-H-paniculata_contig14747:582..6001622929173.8350167-UTR-H-paniculata_contig14747:582..600Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14747 583..600 +
1691480760.1048868-UTR-H-paniculata_contig14747:582..6001691480760.1048868-UTR-H-paniculata_contig14747:582..600Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14747 583..600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.852851-CDS-H-paniculata_contig14747:600..7771622929173.852851-CDS-H-paniculata_contig14747:600..777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14747 601..777 +
1691480760.118528-CDS-H-paniculata_contig14747:600..7771691480760.118528-CDS-H-paniculata_contig14747:600..777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14747 601..777 +
1622929174.0624495-CDS-H-paniculata_contig14747:3214..33401622929174.0624495-CDS-H-paniculata_contig14747:3214..3340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14747 3215..3340 +
1691480760.1400816-CDS-H-paniculata_contig14747:3214..33401691480760.1400816-CDS-H-paniculata_contig14747:3214..3340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14747 3215..3340 +
1622929174.0835915-CDS-H-paniculata_contig14747:4552..46481622929174.0835915-CDS-H-paniculata_contig14747:4552..4648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14747 4553..4648 +
1691480760.153431-CDS-H-paniculata_contig14747:4552..46481691480760.153431-CDS-H-paniculata_contig14747:4552..4648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14747 4553..4648 +
1622929174.1008554-CDS-H-paniculata_contig14747:6039..61681622929174.1008554-CDS-H-paniculata_contig14747:6039..6168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14747 6040..6168 +
1691480760.1636221-CDS-H-paniculata_contig14747:6039..61681691480760.1636221-CDS-H-paniculata_contig14747:6039..6168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14747 6040..6168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14747.2834.1

>prot_H-paniculata_contig14747.2834.1 ID=prot_H-paniculata_contig14747.2834.1|Name=mRNA_H-paniculata_contig14747.2834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MEGCCKTLKPVVLELGGKDPFVVCDDADVESVMPFIMKGSFFNAGQNCIG
VERVFVYEKVYDTFVARVTELASNLRQGPVLGGETVDCGAMVMPAQLDIV
QALVDDAVSRGAKVTTGGSRNMQYPNGLFYRPTVLAGVTCDMKIAQEEVF
GPVMTIIKVPGNSDERCIEMVNTCK*
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mRNA from alignment at H-paniculata_contig14747:583..6168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14747.2834.1 ID=mRNA_H-paniculata_contig14747.2834.1|Name=mRNA_H-paniculata_contig14747.2834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5586bp|location=Sequence derived from alignment at H-paniculata_contig14747:583..6168+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTAGGACAGAAGGTAATGGAGGGATGCTGCAAGACACTGAAGCCCGT
TGTGCTCGAGCTAGGGGGCAAGGATCCATTCGTCGTCTGCGACGACGCCG
ATGTGGAGAGCGTGATGCCGTTCATAATGAAGGGGTCATTCTTCAACGCC
GGGCAGAATTGCATCGGAGTCGAGCGAGTCTTTGTGTACGAGAAGGTGTG
ATATGCATGGCTACCGGAGGGGAGGAGGACGGGGGGGGGGGGGGCATGTA
TCGTGTATCGATGTTGAAGCTATTCGGCTAACCTTCTCTCAGTCGTGTAC
AACTATCAGCGGAGTTAGGTCGATGGAGGAGGGGAAGGAGGGAGAGGGGA
GCGTGCATGTTTTATGCCAGTGAAGTGACTTTCGCATGGACTTGACGGGG
GAAATTGGAGAATGCTGCTGCTTGGTTCATGAATAAGGTACTGCTCGCGT
GATTGTTACATAACGATCTCACTCACGACTGAGTGGCAGGGCTGTTCGCA
CCCCTTCGATCCGGCACGGTATGGGTCATACACCTGTACTTACGATATTC
GGCAAGCGAGTATCGATTACCGTATCATTCGCGTGTGTTGTACTCTGCGT
GAGCATCAAATGGCTTCCGCGTGAACGCATGACAGAAGTAAACCATACAC
ACACCCATTCGCTCACCGCTAACCTTATCCACACAAGCAACAACCAACCC
ATTCGCCAAAGTTCGTAGATCTACAACACCCATGCAATGACTCCATCGTA
CCTGCCCATGTTAGTCAAGGAGGTTATGTAGCTGGCCTTAAACCGAAGCT
GTGTGCAACTTCATGAGCGAGATTCGAGTGGACACTGCATGTGGACTACT
GTGCTCACAAGGGATCTACCAATGTATACATAGCTCGCATGTGTCACTAC
TTTCGCGCAAACATGACATGATACATGACCTTGCACGTTACGAGCCGACG
TGACACGTTAGCTAAATATCAATATCCCTTGGTATGCGCAGGCAGTAAGC
TTGCTCACAAGTCAATCCATTTTTTTTTTTTTTCGATGTATATATATGAA
GTATTGTGACATGACGTTATTTTTACCCCATGTTGAACTTTGTGTACTTC
ACCTGAATGAAGTCTCTTTCTTAACTGTGTATCAGCAAAATTGGAGCATG
ACCACTAACGGGAGCGTACTCATGGTTTGCATGTTGTGGTTAATTCTTAG
ACTAATATTGACCATGCCTCCTGGAGAGGATGAAGCAGGGGAGGGGAGGA
GAGCGGGCGAGTGAGATTTTGGTTTGTTTGAATAAACTGGTTGTGAAGGA
AAAGAAGACCCATCTTGATATTTATGACCACAAGTTAGTTCACTTCACAC
ATGCAGCAGCTAGCTCGTTTGGAACACGACCAAGGTGGGGTTTCCTCCCT
CGATTACAAATGCTCTGGATGATTTTAGGCGATTTTATTCCATTCCATAG
TTTTCGCCGCGGCTGTACGTGGTCCACGGTAGGTAGGTCACATAAAAACG
TTTCGCATACTGAACGTTGAGGCAAATGGGATGCTTTTTAGCTTATGTTT
TTCCCGTCTATTAACAGTACTTTTTCGAGACATGTTTGAATATTTCACCC
ACGCCCCCCCCCCCCGACAAATACGAATACTACTTGCCAATGGCTTTCTC
ATTTTTTTTTTCAAGTACTCGCCTGATTTTTCATAATAAGCGTACACATA
GAACCAGAGTATCCACACCTGTCCATTCGATTTACCAGTATTATCAGCAG
TCGTCGATGGTCCGGGGCATATCGAATGCATAAACTCAATCTGAAACGCA
TTCAAATACTTTATATATATATTTTTTGAGAAAGCTGTTATGAGATGTTG
ATTGCAGGACGTGACAATCATTGTCTAATGTGACGGTTCCATCCCCAATC
CCTGAGTTTATGTAATGTAGCCTCAGTTTGAGCTGGGGGTAGGAAGCACG
GACCGTGTTACCGCCCCACCCCAACTGTCAGACTTGTATCGACCCAGGGT
TGTTCCTGACCTATAGCAATGTACAACTAATACAAGAGACCAGACCATTG
CAAGGACTACTTCTACCACCCCAGCCGTACTGCTCTAAGAGTCTTGTACA
GCATAGTCAGTAATAGGAAACAATAACCTACGTGTGTGAGATACTCCGTA
ATTCCGCAATTTCTACAGCAGTTATCATCACAAAGCTATTTGTAAGTAGT
ATTCGTATCTGTCCGGAGGATGGAATATTTACATCCGATTCATTCGTTTT
AAAAATCAGGAGTGCTTCGGGGCATTTCAAAGGAGTGCCCCAAAAATAAA
AAGCAGATGGATCTGGTTGCTCGAGAACAACAGATCTGCGATGGACTGTG
TCTTCCCGAGGTCTGATACAGCGTTATTTTCATCTATTACGTGAAGAAAA
ATGTCACAACAACAACGCCTATCGGAAAACAGATGTTCGAGGGCTGCTGC
GTCCCGAGAAAGGGTTCAAAGACAACCGGTGTTTGTGTCATTCGTGCTGG
GGCCCGCAAAAGTTCGATGTCTCGCTCGTGCTGTGTTATGCATGAAACCT
AGCTCCGCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTATGTGTGTGTG
TGTGTGTTTTTCCCCTTTGACTGTCTTGTCAGGTGTACGATACTTTCGTG
GCGCGGGTGACTGAGTTGGCGAGCAACCTCCGACAAGGACCAGTGCTGGG
AGGAGAGACCGTGGACTGCGGAGCTATGGTAATGCCGGCACAGCTCGACA
TCGTTCAGGTGAGAGATGGTTCGCACTGAATCACTTACTGCGCCAGTTGT
AGGTGACGGTGATTTGATTGAATGTCAACGTCGGACCTATTTGTTTTGCA
CATGTATTAGGTTAGATACCATCGCAAGCTCGCAGATCCTGAATATATAT
ACACTTTTTTTTTGTCGTCGCAGATTAGCACTCCTATCCGAAGCCGGGAT
TGTAATGCCCCGGGGTTCTTAACAGAAGCGAATGTTTGGAGGATGACGAA
ATGTAGACGACAGGAGTTTAGGAAAAATGTGTGTGTGTTTTTTTACCGAC
ATATTTCTTGGAGAGACCTGAATTTTTTTTTTGTATGTTGGAGTATTTTA
CGTCTCGAGCTGTTTTTTTTTTGCGGTTCATGCCTCTTCTGCCCCCTTCA
TGTGGCGAGAGAGAGAAGTGGGGAGGGGGGGTAAGCCACGGTCGTTATGT
ATTAAAGAGTCAATTAGGTATTAAAACCAAAGCGTTAAGACCATTCCGTT
AACTACCTCGTATCACCCTCTGACATCGCGTCCCCTCATGTTTTTTTCAA
AGCTCGGTTTTCTCAACAAGAACGGTGCTTTGTCATGACACCGATAGCGA
TATTCTTAGGGAGATTTTTTTTGAGATATTTCGATAGATGTGATATTTCT
TGGCAGTGCCAACAGGATATTCTTGCTTGTCAAGAATATCGGATTTGGAG
ACTAATATCGGGGGGCGGGGGGCGATATCAAAGGGTGTTGTACGGTAACG
TCTCACAGAAATCGTAATTTTCATTTGACCTGCAAGTATAGTATATTGTC
TAACTGGTTTTGGGGGGGCTCACCTCAAGTGGTCTCTGTGTGTAACGTTG
TACGGATTGATAAAGGGGCCAATTAATCATACGTGTTACTTCTTTGGGAT
GCGCACGTTTTATGTTTTGAGCATAACCTGGGTGGCATCCGAGCAGTCCG
TGCCTACTGTCCGTCCTTTCGCAGCGGCGGCGGCGAAGAGGCTCTCTGGC
CAGCAACACTGCTGTTCGCGACTGTTCTCCCGTGTTTGGAGGAGTCGCTC
GGGTACAGATTTGAAAATCTTTTCCGAATTCAAGTCGGAACGCTGATGAC
GAACGCTCCTCTTGTATTGAGTGATAACGGTTTGTATGCATGTGTATGTA
TGTTCCGCCAACGGTATATAATACTACTAACCGTTTGATTTCTGGTACGT
GGATATGTATATACGCGCAGGCTCTGGTGGATGACGCAGTGTCTAGAGGG
GCAAAGGTGACGACGGGGGGGAGCAGGAATATGCAATACCCCAATGGGCT
TTTCTATAGACCAACGGTGAGTTGTGACATTAGTTTTTAAGACAAGGCAA
GACGAGCCACTTGAATATATTAAAAACAGAACGATCTACACAATGGTACT
CATCGTGTGTTGTGTGTAAATAGCTGGACCAAAGCAATTCCATCTCATTC
GGGAATATGGGCCTAACTAGGGATTATTATCCCGTGTTTTTTTTTTTTTT
TCCGATTGAGACCTCCTGGAAGCCTATGGATGAATTCGGCGTTGTGTTTC
TGAAACTTTCGGAATGACATGCTATATTTGTGATTTGTTAGAGAAGGTGG
ACATTCACGGCGTTCGAAATAAATCAAAATGATATAAAACATTCGCGCAG
ACGTGTGACATAGACTAGCGTATTTTTTTTATGTATGTATGTATGTATGT
ATGTAAGAGTCCCTGTTTCAGGTATTGGAGCACGCCAAAACCCGAGTGAA
GTGTTTTTCACTCTAGTCTGTCTCGTCTTCCTTTTTCTTATTACGATATA
CATATTTATTGTTGCCCAAATAGAATTTGTTTTAATTTTTTAATTTTTTG
TGTATTTTTTTTTTTATGTATTTTGTTTTAATGTTTTAATTTTTTGTGTA
TTTTGTTTTAATGTTTTAATTTTTTGTGTATTTTGTTTTAATGTTTTAAT
TTTTTGTGTATTTTGTTTTGATGTTTTAATTTTTTGTGTATTTTGTTTTA
ATGTTTTAATTTTTTGTTTTAATGTTTTAATTTTTTGTGTATTTTGTTTT
GATGTTTTAATTTTTTGTGTATTTTGTTTTAATGTTTTAATTTTTTGTGT
ATTTTGTTTTAATGTTTTAATTTTTTGTGTATTTTGTTTTGATGTTTTAA
TTTTTTGTGTATTTTGTTTTGATGTTTTAATTTTTTGTGTATTTTGTTTT
AATGTTTTAATTTTTTGTGTATTTTGTTTTGATGTTTTAATTTTTTGTGT
ATTTTGTTTTAATGTTTTAATTTTTTGTGTATTTTGTTTTAATGTTTTAA
TTTTTTATGTATTTTGTTTTGATGTTTTAATTTTTTGTGTATTTTGTTTT
GATGTTTTAATTTTTTGTGTATTTTGTTTTAATGTTTTAATTTTTTGTGT
ATTTTGTTTTGATTTAATTTTTTGTGTATTTTGTTTTAATGTTTTAATTT
TTGTGTATTTTTTTTAATGTTTTAATTTTGTGTATTTTGTTTTAATGTTT
TAATTTTATATGTATTTCGTTTAATTTTTTAATTTTATGTATGGTCCAGT
ACCAACTCCCCCCCGTTAAAGTCCACTCTATGTAACATGGTTTTAGTTTG
TAAAAGGTCATCTACGTGTTGTGCAGTGCTCATCCGTTATCAAATGTTAC
AACCGAACGGTTTTCGTTTGTATTTATGATGTCTTTGTGTGTGTGGCGAC
TTTTCAGGTGCTGGCAGGTGTAACGTGTGACATGAAGATAGCCCAAGAAG
AAGTATTCGGTCCCGTAATGACCATTATCAAGGTGCCCGGAAACAGCGAC
GAACGATGTATCGAGATGGTGAACACATGCAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14747:583..6168+

>mRNA_H-paniculata_contig14747.2834.1 ID=mRNA_H-paniculata_contig14747.2834.1|Name=mRNA_H-paniculata_contig14747.2834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig14747:583..6168+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGATGCTGCAAGACACTGAAGCCCGTTGTGCTCGAGCTAGGGGG
CAAGGATCCATTCGTCGTCTGCGACGACGCCGATGTGGAGAGCGTGATGC
CGTTCATAATGAAGGGGTCATTCTTCAACGCCGGGCAGAATTGCATCGGA
GTCGAGCGAGTCTTTGTGTACGAGAAGATGGAGGGATGCTGCAAGACACT
GAAGCCCGTTGTGCTCGAGCTAGGGGGCAAGGATCCATTCGTCGTCTGCG
ACGACGCCGATGTGGAGAGCGTGATGCCGTTCATAATGAAGGGGTCATTC
TTCAACGCCGGGCAGAATTGCATCGGAGTCGAGCGAGTCTTTGTGTACGA
GAAGGTGTACGATACTTTCGTGGCGCGGGTGACTGAGTTGGCGAGCAACC
TCCGACAAGGACCAGTGCTGGGAGGAGAGACCGTGGACTGCGGAGCTATG
GTAATGCCGGCACAGCTCGACATCGTTCAGGTGTACGATACTTTCGTGGC
GCGGGTGACTGAGTTGGCGAGCAACCTCCGACAAGGACCAGTGCTGGGAG
GAGAGACCGTGGACTGCGGAGCTATGGTAATGCCGGCACAGCTCGACATC
GTTCAGGCTCTGGTGGATGACGCAGTGTCTAGAGGGGCAAAGGTGACGAC
GGGGGGGAGCAGGAATATGCAATACCCCAATGGGCTTTTCTATAGACCAA
CGGCTCTGGTGGATGACGCAGTGTCTAGAGGGGCAAAGGTGACGACGGGG
GGGAGCAGGAATATGCAATACCCCAATGGGCTTTTCTATAGACCAACGGT
GCTGGCAGGTGTAACGTGTGACATGAAGATAGCCCAAGAAGAAGTATTCG
GTCCCGTAATGACCATTATCAAGGTGCCCGGAAACAGCGACGAACGATGT
ATCGAGATGGTGAACACATGCAAGTGAGTGCTGGCAGGTGTAACGTGTGA
CATGAAGATAGCCCAAGAAGAAGTATTCGGTCCCGTAATGACCATTATCA
AGGTGCCCGGAAACAGCGACGAACGATGTATCGAGATGGTGAACACATGC
AAGTGA
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