mRNA_H-paniculata_contig14739.2831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14739.2831.1
Unique NamemRNA_H-paniculata_contig14739.2831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: D8LEQ8_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ8_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.670e-64
Identity = 91/109 (83.49%), Postives = 101/109 (92.66%), Query Frame = 1
Query:    1 VSDCASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVRSTCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            +S+CASNCS HGDC YG CSCHDG++GLDCSN SCPGD+CYYEETT V+VCSHCCQAGW+HQDGDTYVTEDV RS CS TSPGE++GICDGFGTCQCAPPF+GDDCSIK
Sbjct:  738 MSECASNCSFHGDCSYGSCSCHDGFFGLDCSNASCPGDFCYYEETTHVEVCSHCCQAGWSHQDGDTYVTEDVSRSECSVTSPGESHGICDGFGTCQCAPPFIGDDCSIK 846          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A7S1U7T1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7T1_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.010e-46
Identity = 69/111 (62.16%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 VSDCASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVV--RSTCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            ++DC  NCS+HGDC  G+C+CH GYYG DCSNTSCPGD+C+Y++ TR Q C HCC AG+ H         D V  + TCSA  PG  NGICDGFG CQCAPPF+GDDCSIK
Sbjct:  148 LNDCLGNCSNHGDCSLGFCTCHPGYYGSDCSNTSCPGDFCWYDDFTRQQHCRHCCHAGFDHDANADNFDIDYVQEKKTCSAEDPGIMNGICDGFGQCQCAPPFIGDDCSIK 258          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A5A8BZE0_CAFRO (EGF_2 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BZE0_CAFRO)

HSP 1 Score: 153 bits (386), Expect = 6.200e-46
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   19 NCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVRSTCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            NCS  GDC +G+C C+DGYYGLDCSNTSCPGDYCY +ET   QVC+HCC A W H D  +Y   +  +  C   + GE++GICDGFG+CQC PPFL +DCS++
Sbjct:   12 NCSGRGDCVFGHCYCYDGYYGLDCSNTSCPGDYCYMDETAHTQVCTHCCSARWEHADNQSYARRER-KVPCGPANAGESHGICDGFGSCQCRPPFLTEDCSVR 113          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A7S2FWN4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWN4_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.430e-44
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 VSDCASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVR-STCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            + +C +NCS+HG C+YG+C C+DGYYG+DCSN SCPGD+CYY+  TR Q C HCC +G+ H DG+T++     R S C+    G +NGICDG+GTCQCAPPFL DDCSIK
Sbjct:  368 IHECVNNCSNHGVCEYGFCQCYDGYYGVDCSNISCPGDFCYYDVETREQHCQHCCHSGYNHTDGETWIDGIGARKSPCNHVDFGPSNGICDGYGTCQCAPPFLDDDCSIK 477          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A7S3XUH1_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUH1_HETAK)

HSP 1 Score: 159 bits (403), Expect = 5.120e-44
Identity = 70/109 (64.22%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    1 VSDCASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVRSTCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            + DC SNCS HGDC YG+C C DGYYG+DCSNTSCPGDYCYY++   VQ CSHC  AG+ H D DTY +  + +  CS      +NGICDGFGTCQCAPPFLG+DC+IK
Sbjct:  380 IHDCPSNCSDHGDCYYGFCFCDDGYYGVDCSNTSCPGDYCYYDDDN-VQQCSHCSFAGYEHTDADTYAS-GLEKIPCSDDVTCYSNGICDGFGTCQCAPPFLGEDCAIK 486          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A7S3K479_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K479_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.360e-44
Identity = 68/115 (59.13%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 VSDCASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVRSTCSATSP------GETNGICDGFGTCQCAPPFLGDDCSIK 327
            + DC +NCS  GDC YGYC C+ GYYG DCSN SCPGD+CYY+E T  Q C HCCQA + H D D Y+  D+ +  CS ++       GE+NGICDGFGTCQC+PP++GDDCSIK
Sbjct:  789 IHDCPNNCSMQGDCYYGYCRCYHGYYGSDCSNISCPGDFCYYDENTNEQKCQHCCQAAFNHSDDDVYIL-DIPKLPCSFSTQRLDGSFGESNGICDGFGTCQCSPPYIGDDCSIK 902          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A482UY94_9ARCH (EGF-like domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UY94_9ARCH)

HSP 1 Score: 155 bits (391), Expect = 4.870e-43
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 1
Query:   10 CASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVRSTCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            C +NC+ HGDC YG+C C  GYYG+DCSNTSCPG +C+Y+  +  Q+C+H CQA + H D DTYV +D+ +  CS   PGE+NGICDGFGT  CAPPF+  DCS+K
Sbjct:  221 CVNNCTGHGDCYYGFCFCFVGYYGVDCSNTSCPGTFCHYDPISHEQICTHACQAAYNHTDNDTYV-QDIAKIPCSIEHPGESNGICDGFGTTMCAPPFITQDCSVK 325          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A5A8C153_CAFRO (EGF-like domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C153_CAFRO)

HSP 1 Score: 157 bits (397), Expect = 8.790e-43
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   10 CASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVRSTCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            CA NCS  GDC +G+C C+DGYYGLDCSNTSCPGDYCY +ET   QVC+HCC A W H D  +Y   +  +  C   + GE++GICDGFG+CQC PPFL +DCS++
Sbjct:  512 CAKNCSGRGDCVFGHCYCYDGYYGLDCSNTSCPGDYCYMDETAHTQVCTHCCSARWEHADNQSYARRER-KVPCGPANAGESHGICDGFGSCQCRPPFLTEDCSVR 616          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A2R5GQ16_9STRA (Teneurin-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ16_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.510e-42
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   10 CASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVRSTCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            C SNCS HG C YG+C+C  GYYG DCSNTSCPGD+CYY+E T+ QVC HCC A + H D D YV  +V + +CS   PG + GICDG+G C CAPPF+G DCS+K
Sbjct:  670 CISNCSDHGSCSYGFCTCDSGYYGFDCSNTSCPGDFCYYDEITQEQVCKHCCHAPYTHTDNDQYVA-NVGKLSCSLERPGNSEGICDGYGHCLCAPPFVGLDCSMK 774          
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Match: A0A5A8EC49_CAFRO (EGF-like domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EC49_CAFRO)

HSP 1 Score: 157 bits (397), Expect = 2.010e-42
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   10 CASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQVCSHCCQAGWAHQDGDTYVTEDVVRSTCSATSPGETNGICDGFGTCQCAPPFLGDDCSIK 327
            CA NCS  GDC +G+C C+DGYYGLDCSNTSCPGDYCY +ET   QVC+HCC A W H D  +Y   +  +  C   + GE++GICDGFG+CQC PPFL +DCS++
Sbjct:  597 CAKNCSGRGDCVFGHCYCYDGYYGLDCSNTSCPGDYCYMDETAHTQVCTHCCSARWEHADNQSYARRER-KVPCGPANAGESHGICDGFGSCQCRPPFLTEDCSVR 701          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14739.2831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEQ8_ECTSI1.670e-6483.49EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S1U7T1_9STRA2.010e-4662.16Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A5A8BZE0_CAFRO6.200e-4659.22EGF_2 domain-containing protein n=1 Tax=Cafeteria ... [more]
A0A7S2FWN4_9STRA1.430e-4460.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3XUH1_HETAK5.120e-4464.22Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3K479_9STRA7.360e-4459.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A482UY94_9ARCH4.870e-4358.49EGF-like domain-containing protein n=1 Tax=archaeo... [more]
A0A5A8C153_CAFRO8.790e-4359.43EGF-like domain-containing protein n=1 Tax=Cafeter... [more]
A0A2R5GQ16_9STRA1.510e-4261.32Teneurin-1 n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A5A8EC49_CAFRO2.010e-4259.43EGF-like domain-containing protein n=5 Tax=Cafeter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14739contigH-paniculata_contig14739:931..1573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue1.7e-54
Seed eggNOG ortholog2880.D8LEQ8
KEGG koko:K16474
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-26_000770.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.3842607-CDS-H-paniculata_contig14739:930..10981622929173.3842607-CDS-H-paniculata_contig14739:930..1098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14739 931..1098 +
1691480759.8628771-CDS-H-paniculata_contig14739:930..10981691480759.8628771-CDS-H-paniculata_contig14739:930..1098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14739 931..1098 +
1622929173.3985782-CDS-H-paniculata_contig14739:1414..15731622929173.3985782-CDS-H-paniculata_contig14739:1414..1573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14739 1415..1573 +
1691480759.875979-CDS-H-paniculata_contig14739:1414..15731691480759.875979-CDS-H-paniculata_contig14739:1414..1573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14739 1415..1573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14739.2831.1prot_H-paniculata_contig14739.2831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14739 931..1573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14739.2831.1

>prot_H-paniculata_contig14739.2831.1 ID=prot_H-paniculata_contig14739.2831.1|Name=mRNA_H-paniculata_contig14739.2831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
VSDCASNCSSHGDCQYGYCSCHDGYYGLDCSNTSCPGDYCYYEETTRVQV
CSHCCQAGWAHQDGDTYVTEDVVRSTCSATSPGETNGICDGFGTCQCAPP
FLGDDCSIK
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mRNA from alignment at H-paniculata_contig14739:931..1573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14739.2831.1 ID=mRNA_H-paniculata_contig14739.2831.1|Name=mRNA_H-paniculata_contig14739.2831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=643bp|location=Sequence derived from alignment at H-paniculata_contig14739:931..1573+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCTGATTGCGCTTCCAACTGCTCGTCCCACGGAGATTGTCAATATGG CTACTGCTCTTGCCACGATGGCTACTATGGGCTAGATTGTTCCAACACCT CGTGCCCCGGGGACTATTGCTATTACGAAGAGACTACGCGCGTCCAGGTC TGCTCCCACTGCTGCCAGGTAAGCACCAGAGCAAGGGAGAGAGAAAGCGG GTCGGTTGTACATGTGGTATGTAGACTTGAACAATACTATCGCGTTGAGA GCCAAATTCGATCACCCACCTGGAAAATGGGTACAAATGTACTGTAGGCA GTTCATAGGTTAGGCTTACCTTGCAGCGATTCTGATACCTTCATCAGCCA TCATCTGAATGGAAATGGTGCACACTGTCATGTCTTAGTCTGCGCATTGT ATTAAGGCAACTAATTAGTAACATTTGAATAATAAATTCGTCTTTTGAAC GTTGTATTGTGCATTCGTGGGTGGTCGAGAGCAGGCTGGTTGGGCACACC AAGACGGCGACACTTACGTAACCGAAGACGTCGTTCGATCCACGTGCTCC GCGACCAGTCCAGGAGAAACCAACGGGATCTGCGATGGCTTCGGAACGTG CCAGTGCGCTCCTCCCTTCCTGGGTGATGATTGTTCGATCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14739:931..1573+

>mRNA_H-paniculata_contig14739.2831.1 ID=mRNA_H-paniculata_contig14739.2831.1|Name=mRNA_H-paniculata_contig14739.2831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig14739:931..1573+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCTGATTGCGCTTCCAACTGCTCGTCCCACGGAGATTGTCAATATGG
CTACTGCTCTTGCCACGATGGCTACTATGGGCTAGATTGTTCCAACACCT
CGTGCCCCGGGGACTATTGCTATTACGAAGAGACTACGCGCGTCCAGGTC
TGCTCCCACTGCTGCCAGGTGTCTGATTGCGCTTCCAACTGCTCGTCCCA
CGGAGATTGTCAATATGGCTACTGCTCTTGCCACGATGGCTACTATGGGC
TAGATTGTTCCAACACCTCGTGCCCCGGGGACTATTGCTATTACGAAGAG
ACTACGCGCGTCCAGGTCTGCTCCCACTGCTGCCAGGCTGGTTGGGCACA
CCAAGACGGCGACACTTACGTAACCGAAGACGTCGTTCGATCCACGTGCT
CCGCGACCAGTCCAGGAGAAACCAACGGGATCTGCGATGGCTTCGGAACG
TGCCAGTGCGCTCCTCCCTTCCTGGGTGATGATTGTTCGATCAAGGCTGG
TTGGGCACACCAAGACGGCGACACTTACGTAACCGAAGACGTCGTTCGAT
CCACGTGCTCCGCGACCAGTCCAGGAGAAACCAACGGGATCTGCGATGGC
TTCGGAACGTGCCAGTGCGCTCCTCCCTTCCTGGGTGATGATTGTTCGAT
CAAG
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