mRNA_H-paniculata_contig14739.2832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14739.2832.1
Unique NamemRNA_H-paniculata_contig14739.2832.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14739.2832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14739contigH-paniculata_contig14739:5350..6034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size686
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.3118296-CDS-H-paniculata_contig14739:5349..57271622929173.3118296-CDS-H-paniculata_contig14739:5349..5727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14739 5350..5727 +
1691480759.8438542-CDS-H-paniculata_contig14739:5349..57271691480759.8438542-CDS-H-paniculata_contig14739:5349..5727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14739 5350..5727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.3276527-UTR-H-paniculata_contig14739:5727..60341622929173.3276527-UTR-H-paniculata_contig14739:5727..6034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14739 5728..6034 +
1691480759.8533094-UTR-H-paniculata_contig14739:5727..60341691480759.8533094-UTR-H-paniculata_contig14739:5727..6034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14739 5728..6034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14739.2832.1prot_H-paniculata_contig14739.2832.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14739 5350..5727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14739.2832.1

>prot_H-paniculata_contig14739.2832.1 ID=prot_H-paniculata_contig14739.2832.1|Name=mRNA_H-paniculata_contig14739.2832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
AKPSISRSPLPHYTWVLPLSVAAALAFFSDYHCTPSPVVSHALISAHCNT
KVTVSNDTVCDGCSGGEGIVIDRVVTENGLHVKAVFSVGARDGQGGHREG
FRWWWWSCLQRWRSSFHSSSSSRQR*
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mRNA from alignment at H-paniculata_contig14739:5350..6034+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14739.2832.1 ID=mRNA_H-paniculata_contig14739.2832.1|Name=mRNA_H-paniculata_contig14739.2832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=685bp|location=Sequence derived from alignment at H-paniculata_contig14739:5350..6034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAACCTTCCATCTCAAGATCTCCTCTTCCTCACTACACCTGGGTGCT
GCCCCTTTCGGTGGCGGCAGCACTGGCATTCTTCTCTGACTATCACTGCA
CACCATCCCCCGTCGTCTCACACGCACTCATCAGTGCCCACTGCAACACA
AAAGTAACAGTAAGCAATGACACCGTTTGTGATGGGTGTTCTGGTGGTGA
AGGCATTGTAATTGATAGGGTTGTGACCGAGAATGGCTTGCACGTAAAAG
CCGTTTTTAGTGTTGGCGCGCGAGACGGGCAGGGGGGGCACCGCGAAGGA
TTCAGGTGGTGGTGGTGGTCGTGCTTGCAGCGGTGGCGTAGTTCTTTCCA
CAGCAGCAGCAGCAGCAGGCAAAGGTAGAGGATACGAGGACACTACTCGC
GGGAATAGGAGAGGAAAGCCGTGGTAGATATTTTGTGCCCCTGAGGGTTT
GTGGTTTGTTGTTGGTATAACCTAATAGCACGTCGGAATGTTTTATCAAA
GGAGCCGGAGTAAAGTACATCAGATAAAAGCATTGCTTGCCCCAGCAGTT
GTCGTCGTGGTTGAATGTCATTTACAAAAAGTTATAGCCAGCAGATATTT
CGATGTTATGTGGGTGGCAATAACTTCGCCGGTGAATATTGCGCGCGCTA
AACAATGTGAGAAGAGATCCATATGACATTGCCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig14739:5350..6034+

>mRNA_H-paniculata_contig14739.2832.1 ID=mRNA_H-paniculata_contig14739.2832.1|Name=mRNA_H-paniculata_contig14739.2832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig14739:5350..6034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAACCTTCCATCTCAAGATCTCCTCTTCCTCACTACACCTGGGTGCT
GCCCCTTTCGGTGGCGGCAGCACTGGCATTCTTCTCTGACTATCACTGCA
CACCATCCCCCGTCGTCTCACACGCACTCATCAGTGCCCACTGCAACACA
AAAGTAACAGTAAGCAATGACACCGTTTGTGATGGGTGTTCTGGTGGTGA
AGGCATTGTAATTGATAGGGTTGTGACCGAGAATGGCTTGCACGTAAAAG
CCGTTTTTAGTGTTGGCGCGCGAGACGGGCAGGGGGGGCACCGCGAAGGA
TTCAGGTGGTGGTGGTGGTCGTGCTTGCAGCGGTGGCGTAGTTCTTTCCA
CAGCAGCAGCAGCAGCAGGCAAAGGTAGGCGAAACCTTCCATCTCAAGAT
CTCCTCTTCCTCACTACACCTGGGTGCTGCCCCTTTCGGTGGCGGCAGCA
CTGGCATTCTTCTCTGACTATCACTGCACACCATCCCCCGTCGTCTCACA
CGCACTCATCAGTGCCCACTGCAACACAAAAGTAACAGTAAGCAATGACA
CCGTTTGTGATGGGTGTTCTGGTGGTGAAGGCATTGTAATTGATAGGGTT
GTGACCGAGAATGGCTTGCACGTAAAAGCCGTTTTTAGTGTTGGCGCGCG
AGACGGGCAGGGGGGGCACCGCGAAGGATTCAGGTGGTGGTGGTGGTCGT
GCTTGCAGCGGTGGCGTAGTTCTTTCCACAGCAGCAGCAGCAGCAGGCAA
AGGTAG
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