mRNA_H-paniculata_contig14732.2828.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: D8LFJ1_ECTSI (Nuclear pore complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ1_ECTSI) HSP 1 Score: 314 bits (804), Expect = 5.110e-96 Identity = 216/510 (42.35%), Postives = 259/510 (50.78%), Query Frame = 1 Query: 58 EMEESWQDVAPV---------RPNDNVLDTGEQAYLRTQQVLAEAQVVGNILFDDGRGGGQEAGGIGSYTRADRRDD-------------------------------------DGERETKSQELSSSIFDRMLAPGGVGKGLGVDAAARRPEEISFCDAFLELQEMMRSLTPGARVQPFDMEPILAKLLDCTEMAQKAEASAMARLRELQGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRTLPPAANPNDSDDVAMEAMWHRDELFRRTTSVVQWLQEAAEGKLETRAPSAFVTCGGH---KIGWGLTLESLAAGAGQKNSEVAQMHPDASLKKTAGGAALKVVRLVGQDDLDEEELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSE----EDGYPVED-----GAVFSPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWEDQV 1413 EMEESW+DV P + +VL+TG +AYLRT+Q+L EA V N LF D E Y RA R+D AA RPEE FC+AFLELQ ++ L PGAR +P + IL + E A+ A + RLREL+G + R+ P PN SD+ + +M RD FRRT +VV+WLQ A +L +A GG +GW TLESLA G GQK SEVAQMHPDA+L+ + G LKV+RLVGQDDLDEE LLR+ W LVRAGR+ AAK LC RGQPWRAAAMAGGGVVG+ E+ +E+ GA++SPGQGLWQEMCWQLSVSLE+GAD SEGPARSVA HEAA+FAHLAGN+ELLL SDLTQSW+DQ Sbjct: 9 EMEESWRDVDPAGDVQRGGATQQGSSVLNTGREAYLRTKQMLDEASAVSNTLFLD------EVDMSRRYQRAYEREDALDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEIRPEEKQFCEAFLELQALLNRLPPGARARPEQISDILQDMYGFAEGAEAAASDTADRLRELRGSGAPAVAVAAAAAHELSLEKDTWALLLIMNGVDKEDEDILEGIRQREEEGGDANDRSGAPRG-PNASDEAVLVSMRARDAEFRRTEAVVEWLQGATHTRL-----NALGLGGGEGEGHLGWSDTLESLAVGGGQK-SEVAQMHPDANLRSVSRGG-LKVMRLVGQDDLDEENLLRSAWALVRAGRLSAAKRLCERRGQPWRAAAMAGGGVVGTRVMEGEEERELEEIEAGYGALYSPGQGLWQEMCWQLSVSLERGADSSEGPARSVAKHEAALFAHLAGNSELLLESDLTQSWQDQA 504
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: A0A6H5K9Z7_9PHAE (Nuclear pore complex protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z7_9PHAE) HSP 1 Score: 313 bits (802), Expect = 1.630e-92 Identity = 215/507 (42.41%), Postives = 257/507 (50.69%), Query Frame = 1 Query: 58 EMEESWQDVAPV---------RPNDNVLDTGEQAYLRTQQVLAEAQVVGNILFDDGRGGGQEAGGIGSYTRADRRDDDGERETKSQEL---------------------SSSIFDRMLAPGGVGKGLGVD----------------AAARRPEEISFCDAFLELQEMMRSLTPGARVQPFDMEPILAKLLDCTEMAQKAEASAMARLRELQGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRTLPPAANPNDSDDVAMEAMWHRDELFRRTTSVVQWLQEAAEGKLETRAPSAFVTCGGHKIGWGLTLESLAAGAGQKNSEVAQMHPDASLKKTAGGAALKVVRLVGQDDLDEEELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSE----EDGYPVED-----GAVFSPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWEDQV 1413 EMEESW+DV P +VL+TG +AYLRT+Q+L EA V N LF D E Y RA R+D + S+F A RPEE FC+AFLELQ ++ L PG R +P + IL + E A+ A + RLREL+G + PP P+ SD+ + +M RD FRRT +VV+WLQ A +L V G +GW TLESLAAG GQK SEVAQMHPDA+L+ + G LKV+RLVGQDDLDEE LLR+ W LVRAGR+ AAK LC RGQPWRAAAMAGGGVVG+ E+ +E+ GA++SPGQGLWQEMCWQLSVSLE+GAD SEGPARSVA HEAA+FAHLAGN ELLL SDLTQSW+DQ Sbjct: 9 EMEESWRDVDPAGDVQQGGAAHQRRSVLNTGREAYLRTKQMLDEASAVSNTLFLD------EDDMTRRYQRAYEREDALDAAXXXXXXXXXXXXXXXXXXXXXXXXFFNEGSLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVEIRPEEKQFCEAFLELQALLNRLPPGVRARPEQISDILQDMYGFAEGAEAAASDTADRLRELRGSGAPAVAVAAAAAHELSLEKDTWALLLIMNGVDKEDEDILEGIRRREEEGGDANDSGAPPG--PDASDEALLVSMRARDAEFRRTEAVVEWLQGATHTRLNALGLGGGV--GEGHLGWSDTLESLAAGGGQK-SEVAQMHPDANLRSVSRGG-LKVMRLVGQDDLDEENLLRSAWALVRAGRLSAAKRLCEKRGQPWRAAAMAGGGVVGTRVMEGEEERELEEIEAGYGALYSPGQGLWQEMCWQLSVSLERGADSSEGPARSVAKHEAALFAHLAGNAELLLESDLTQSWQDQA 503
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: A0A1V9Z973_9STRA (Nuclear pore complex protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z973_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.490e-20 Identity = 75/232 (32.33%), Postives = 126/232 (54.31%), Query Frame = 1 Query: 727 LPPAANPNDSDDVAMEAMWHRDELFRRTTSVVQWLQEAAEGKLETRAPSAFVTCGGHKIGWGLTLESLAAGAGQKNSEVAQMHPDASLKKTAGGAALKVVRLVGQDDLDEE-ELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSEEDGYPVEDGAVF--SPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWEDQV 1413 LP A + D +A A+ +R +LF +V++WL+ A + S + +G TL++L ++ S V M PD L++ G + L DD++++ ELL+++W L+RAG+ + A DLC+ GQPWRAA+++GG + G+ E +DG +P + LW++MCWQL+ + + GA+ + + E ++A L+G+ LL+S SWED V Sbjct: 312 LPVTAASTELDAIA--ALENRQQLFALQKTVLKWLEAVAAEDVVATKESRHM--------YGRTLQALQRH--RRASVVGAMDPDGPLRE--GDSYLDA------DDVEDDLELLQSVWRLLRAGQAREAADLCIQLGQPWRAASLSGGEISGACEG----DDGVSRWGNPFRMLWKQMCWQLAEA-QTGANVHKTTSLDAREVERVIYAALSGHARALLASPTCASWEDHV 518
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: T0SID6_SAPDV (Nuclear pore complex protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SID6_SAPDV) HSP 1 Score: 103 bits (256), Expect = 1.340e-19 Identity = 77/236 (32.63%), Postives = 123/236 (52.12%), Query Frame = 1 Query: 727 LPPAANPNDSDDVAMEAMWHRDELFRRTTSVVQWLQEAAEGKLETRAPSAFVTCGGHKIGWGLTLESLAAGAGQKNSEVAQMHPDASLKKTAGGAALKVVRLVGQDDLDEE-ELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSEEDGYPVEDGAVF--SPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMH----EAAVFAHLAGNTELLLSSDLTQSWEDQV 1413 LP A+ + D +A A+ +R++L+ +V++WL+ A +E + TL+ L +++S V M PD L++ V DD ++E +LL ++W L+RAG+ + A DLC+ GQPWRAA++AGG V G+ E +DG +P + LW++MCWQLS A+ + A++ ++ E V+A L+GN +LLSS WED V Sbjct: 323 LPLTASSTELDAIA--ALENRNKLYALQKTVLKWLEAVAAENVEATTEKRHMHA--------RTLKQLQRQ--RRSSVVCAMDPDGPLREGDS--------YVDDDDAEDELDLLTSVWRLLRAGKPREAADLCIQLGQPWRAASLAGGEVNGACEG----DDGVTRWGNPYRMLWKQMCWQLS-----DANATASMAKTTSLQARELERIVYAALSGNANVLLSSPTCACWEDHV 529
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: A0A397FJ88_9STRA (Nuclear pore complex protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FJ88_9STRA) HSP 1 Score: 100 bits (250), Expect = 5.330e-19 Identity = 53/126 (42.06%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 1033 VGQDDL-DEEELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSEEDGYPVEDGAVFSPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWED 1407 V +DD+ D+ +LL+ +W LVRAGR+K A DLC+ GQPWRAA+++GG V G+++D G +P + LW++MCWQ + + ++ +G + +EA V+ L+GN+ LL S L +SWED Sbjct: 3 VDKDDVEDDADLLKGVWQLVRAGRLKEAADLCIQLGQPWRAASLSGGTVCGNDDDSELSRWG---NPLRILWKQMCWQFAEARPT-SNLRKGKSLEAREYEAIVYGALSGNSAALLRSSLCESWED 124
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: A0A397EPX0_9STRA (Nuclear pore complex protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EPX0_9STRA) HSP 1 Score: 100 bits (249), Expect = 6.450e-19 Identity = 52/126 (41.27%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 1033 VGQDDL-DEEELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSEEDGYPVEDGAVFSPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWED 1407 V +DD+ D+ +LL+ +W LVRAGR+K A DLC+ GQPWRAA+++GG V G+++D + +P + LW++MCWQ + + ++ +G + +EA V+ L+GN+ LL S L +SWED Sbjct: 399 VDKDDVEDDADLLKGVWQLVRAGRLKEAADLCIQLGQPWRAASLSGGTVCGNDDDDSELSRWG--NPLRILWKQMCWQFAEARPT-SNLRKGKSLEAREYEAIVYGALSGNSAALLRSSLCESWED 521
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: W4FLV3_9STRA (Nuclear pore complex protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLV3_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.430e-18 Identity = 52/126 (41.27%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 1033 VGQDDL-DEEELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSEEDGYPVEDGAVFSPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWED 1407 V +DD+ D+ +LL+ +W LVRAGR K A DLC+ GQPWRAA+++GG V G+++D + +P + LW++MCWQ + + ++ +G + +EA V+ L+GN+ LL S L +SWED Sbjct: 396 VDKDDVEDDADLLKGVWQLVRAGRPKEAADLCIQLGQPWRAASLSGGTVCGNDDDDSELSRWG--NPLRILWKQMCWQFAEARPT-SNLRKGKSLEAREYEAIVYGALSGNSAALLRSSLCESWED 518
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: F0WN26_9STRA (Nuclear pore complex protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WN26_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 5.890e-18 Identity = 74/225 (32.89%), Postives = 118/225 (52.44%), Query Frame = 1 Query: 754 SDDVAMEAMWHRDELFRRTTSVVQWLQE-AAEGKL---ETRAPSAFVTCGGHKIGWGLTLESLAAGAGQKNSEVAQMHPDASLKKTAGGAALKVVRLVGQDDLDEEELL-RTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGS--EEDGYPVEDGAVFSPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWED 1407 ++D A+E + + FR +V WL++ AAE +L E R A T K G L L + + PDA+L+ AG A DDL++E LL + +W VR+G+++ A D+C++RGQ WRAA+++GG VG+ E+D G F P LW+ +CW+ S +L+ + ++ +E A++A L GN ++L+ S + SWED Sbjct: 359 TEDQAVELLESHNTTFRVLRAVKDWLEDLAAEEELPNLEKRKGIAPRTLRSLKQGTYLGLP-----CSKSECHTIDLDPDATLR--AGDAPFV------DDDLEDEALLMKCLWKCVRSGQLERAIDVCIERGQAWRAASLSGGTPVGASPEQDASISRWGNPFRP---LWKSICWRFS-NLDTPGKMVKSNSKIALRYEKAIYAALGGNAQVLIQSPVCDSWED 566
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: A0A067C376_SAPPC (Nuclear pore complex protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C376_SAPPC) HSP 1 Score: 97.8 bits (242), Expect = 7.540e-18 Identity = 73/232 (31.47%), Postives = 118/232 (50.86%), Query Frame = 1 Query: 727 LPPAANPNDSDDVAMEAMWHRDELFRRTTSVVQWLQEAAEGKLETRAPSAFVTCGGHKIGWGLTLESLAAGAGQKNSEVAQMHPDASLKKTAGGAALKVVRLVGQDDLDEE-ELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSEEDGYPVEDGAVF--SPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWEDQV 1413 LP A + D +A A+ +R++L+ +V++WL+ A + + TL+ L ++ S V M PD L++ V DD ++E +LL ++W L+RAG+ + A DLC+ GQPWRAA++AGG V G+ E +DG +P + LW+ MCWQL+ + + + R+ + E ++A L+GN ++LSS SWED V Sbjct: 324 LPLTAASTELDAIA--ALENRNQLYALQKTVLKWLEAVAAENVVATTEKRHMHA--------RTLKQLQRQ--RRASVVCAMDPDGPLREGDS--------YVDDDDAEDELDLLTSVWHLLRAGKPREAADLCIQLGQPWRAASLAGGEVNGACEG----DDGVTRWGNPYRILWKHMCWQLADATDHASMAKTTSLRAREL-ERVIYAALSGNATVVLSSPTCASWEDHV 530
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Match: A0A484DTG0_BRELC (Nuclear pore complex protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTG0_BRELC) HSP 1 Score: 97.8 bits (242), Expect = 7.890e-18 Identity = 72/221 (32.58%), Postives = 110/221 (49.77%), Query Frame = 1 Query: 757 DDVAMEAMWHRDELFRRTTSVVQWLQEAA-EGKLETRAPSAFVTCGGHKIGWGLTLESLAAGAGQKNSEVAQMHPDASLKKTAGGAALKVVRLVGQDDL-DEEELLRTMWMLVRAGRVKAAKDLCLDRGQPWRAAAMAGGGVVGSEEDGYPVEDGAVF--SPGQGLWQEMCWQLSVSLEKGADHSEGPARSVAMHEAAVFAHLAGNTELLLSSDLTQSWED 1407 +D A + R+E F+ +V WL+ A E +E S + TL + K M PDA ++ G A + DDL DE EL++ +W+ +RAGR+ A DLC+ GQ WRAA+++GG VVG+ E E +P + LW+ MCW+LS KG S+ + +E ++A L+GN ++++ S L +SWED Sbjct: 386 EDDAGRLLETRNETFKIQKAVKTWLENMALESTIELNDKSG--------LKGSRTLRMIKKQKDLKRK--VSMDPDAIMRD--GDANVLT------DDLEDEAELMKALWLYLRAGRMDDAIDLCIRVGQSWRAASLSGGHVVGASESNESTECALERWGNPFRALWKSMCWRLSEETAKGK-LSKSSSLLAKSYEEMIYAALSGNIQVIIKSSLCESWED 587 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14732.2828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14732.2828.1 >prot_H-paniculata_contig14732.2828.1 ID=prot_H-paniculata_contig14732.2828.1|Name=mRNA_H-paniculata_contig14732.2828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=473bp EVKRQEVQVTAMARFRGFDEMEESWQDVAPVRPNDNVLDTGEQAYLRTQQback to top mRNA from alignment at H-paniculata_contig14732:681..5889+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14732.2828.1 ID=mRNA_H-paniculata_contig14732.2828.1|Name=mRNA_H-paniculata_contig14732.2828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5209bp|location=Sequence derived from alignment at H-paniculata_contig14732:681..5889+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14732:681..5889+ >mRNA_H-paniculata_contig14732.2828.1 ID=mRNA_H-paniculata_contig14732.2828.1|Name=mRNA_H-paniculata_contig14732.2828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2838bp|location=Sequence derived from alignment at H-paniculata_contig14732:681..5889+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |