mRNA_H-paniculata_contig14731.2827.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14731.2827.1
Unique NamemRNA_H-paniculata_contig14731.2827.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14731.2827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14731contigH-paniculata_contig14731:2995..3615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size622
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.9693875-CDS-H-paniculata_contig14731:2994..36151622929172.9693875-CDS-H-paniculata_contig14731:2994..3615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14731 2995..3615 +
1691480759.6716838-CDS-H-paniculata_contig14731:2994..36151691480759.6716838-CDS-H-paniculata_contig14731:2994..3615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14731 2995..3615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14731.2827.1prot_H-paniculata_contig14731.2827.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14731 2995..3615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14731.2827.1

>prot_H-paniculata_contig14731.2827.1 ID=prot_H-paniculata_contig14731.2827.1|Name=mRNA_H-paniculata_contig14731.2827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
ENDNGETGPFLMRDTSKEVKKGEINLPLWGHFMIFNSPEEAERHARVFQK
NNELRTELLRPCIFEVADHDTLSKKILDPATETCGPCAALYMRPHFTCPL
YYAMYRHPGTEKSKCSPEMQGPECLEVRCNFTKRASREDIFSLFSSPSGA
SGDIAARAGKYHNAMYASLDKTLPAHRGKPEGTGEVVYWNEGGAYLIGRN
GGEMVGE
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mRNA from alignment at H-paniculata_contig14731:2995..3615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14731.2827.1 ID=mRNA_H-paniculata_contig14731.2827.1|Name=mRNA_H-paniculata_contig14731.2827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at H-paniculata_contig14731:2995..3615+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAATGATAATGGAGAGACGGGGCCATTCCTAATGCGAGATACCAGCAA
GGAGGTGAAGAAGGGGGAGATTAACTTGCCCTTATGGGGACACTTCATGA
TCTTCAACTCCCCGGAGGAGGCGGAGAGGCATGCACGCGTCTTCCAAAAG
AATAACGAGCTACGGACCGAGTTGCTCCGCCCCTGCATCTTCGAAGTGGC
GGATCACGACACGTTGTCGAAGAAGATTCTCGACCCGGCAACTGAGACGT
GTGGGCCTTGTGCGGCATTATACATGCGACCGCACTTCACATGCCCCCTA
TATTACGCAATGTACCGCCATCCGGGCACTGAGAAGAGTAAATGCAGCCC
GGAGATGCAAGGACCAGAGTGCCTAGAAGTCCGCTGTAACTTCACGAAGA
GGGCATCCAGGGAGGACATTTTTAGTTTGTTTTCCAGTCCCAGCGGGGCG
AGCGGCGACATCGCTGCTAGGGCTGGCAAGTACCATAACGCCATGTATGC
CTCGCTCGACAAGACACTCCCGGCCCACCGTGGCAAGCCGGAGGGTACTG
GCGAGGTTGTTTACTGGAACGAAGGCGGCGCCTATCTTATTGGACGGAAT
GGGGGAGAGATGGTTGGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14731:2995..3615+

>mRNA_H-paniculata_contig14731.2827.1 ID=mRNA_H-paniculata_contig14731.2827.1|Name=mRNA_H-paniculata_contig14731.2827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig14731:2995..3615+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAATGATAATGGAGAGACGGGGCCATTCCTAATGCGAGATACCAGCAA
GGAGGTGAAGAAGGGGGAGATTAACTTGCCCTTATGGGGACACTTCATGA
TCTTCAACTCCCCGGAGGAGGCGGAGAGGCATGCACGCGTCTTCCAAAAG
AATAACGAGCTACGGACCGAGTTGCTCCGCCCCTGCATCTTCGAAGTGGC
GGATCACGACACGTTGTCGAAGAAGATTCTCGACCCGGCAACTGAGACGT
GTGGGCCTTGTGCGGCATTATACATGCGACCGCACTTCACATGCCCCCTA
TATTACGCAATGTACCGCCATCCGGGCACTGAGAAGAGTAAATGCAGCCC
GGAGATGCAAGGACCAGAGTGCCTAGAAGTCCGCTGTAACTTCACGAAGA
GGGCATCCAGGGAGGACATTTTTAGTTTGTTTTCCAGTCCCAGCGGGGCG
AGCGGCGACATCGCTGCTAGGGCTGGCAAGTACCATAACGCCATGTATGC
CTCGCTCGACAAGACACTCCCGGCCCACCGTGGCAAGCCGGAGGGTACTG
GCGAGGTTGTTTACTGGAACGAAGGCGGCGCCTATCTTATTGGACGGAAT
GGGGGAGAGATGGTTGGCGAGGAAAATGATAATGGAGAGACGGGGCCATT
CCTAATGCGAGATACCAGCAAGGAGGTGAAGAAGGGGGAGATTAACTTGC
CCTTATGGGGACACTTCATGATCTTCAACTCCCCGGAGGAGGCGGAGAGG
CATGCACGCGTCTTCCAAAAGAATAACGAGCTACGGACCGAGTTGCTCCG
CCCCTGCATCTTCGAAGTGGCGGATCACGACACGTTGTCGAAGAAGATTC
TCGACCCGGCAACTGAGACGTGTGGGCCTTGTGCGGCATTATACATGCGA
CCGCACTTCACATGCCCCCTATATTACGCAATGTACCGCCATCCGGGCAC
TGAGAAGAGTAAATGCAGCCCGGAGATGCAAGGACCAGAGTGCCTAGAAG
TCCGCTGTAACTTCACGAAGAGGGCATCCAGGGAGGACATTTTTAGTTTG
TTTTCCAGTCCCAGCGGGGCGAGCGGCGACATCGCTGCTAGGGCTGGCAA
GTACCATAACGCCATGTATGCCTCGCTCGACAAGACACTCCCGGCCCACC
GTGGCAAGCCGGAGGGTACTGGCGAGGTTGTTTACTGGAACGAAGGCGGC
GCCTATCTTATTGGACGGAATGGGGGAGAGATGGTTGGCGAG
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