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Homology
BLAST of mRNA_H-paniculata_contig14730.2825.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI) HSP 1 Score: 371 bits (952), Expect = 1.970e-116 Identity = 209/346 (60.40%), Postives = 233/346 (67.34%), Query Frame = 1
Query: 1 RDAKGALAMLQCLRESKTVVPDKQSFTLAIQACVWSGNCIKETWSVVEEAERAGV----SFGSKDLLDARLILVQAVGGDLFEGLEDMVNRGVAPDESTLLGVIEACAERGDTAGALQILEMMRAAREGRR--------------GVCPRPSYRSYLAALGACSRAPTSTTAIAADGDNDGDARLEERQRPEVGRERVGDWQASKRVLGMMWEDEAARKAEGKAAVPGVWSPLLQEALSLGPSNVTMPAVPDAVCYQLAMECCVSRGRTDEALSLLSEMEGRGLSPNEAGLCALIKGFA-------AGGGGVGGEGSEEEERWRGIERALGVFEELAERFQPPLRC 963
RDAKGAL+MLQ LRES+ V PD+ S+TLAIQACVWSG+ ++E W++VEEAE SF SKDLLDARL+LVQAVGGD+ +GL++M RGV DEST+LGVIEACA+RGD AGAL IL+MMR A VCPRPSYRSYLAAL DG GDW+A+K VL MMWEDEAAR A+G AVPG WS LQEALSLGPS+VTMPAVPDA CYQLAMECCVS GR DEAL LLSEMEGRGLSPNEA L ALI+GFA GGGG + E RWRG+E ALGVFEELAERF PP R
Sbjct: 325 RDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXTTAVCPRPSYRSYLAALXXXXXXXXXXXXXXXXXSGDGVR---------------GDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALGLLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAADRERAERRWRGVENALGVFEELAERFDPPSRA 655
BLAST of mRNA_H-paniculata_contig14730.2825.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE) HSP 1 Score: 336 bits (861), Expect = 2.700e-102 Identity = 203/375 (54.13%), Postives = 225/375 (60.00%), Query Frame = 1
Query: 1 RDAKGALAMLQCLRESKTVVPDKQSFTLAIQACVWSGNCIKETWSVVEEAERAGV----SFGSKDLLDARLILVQAVGGDLFEGLEDMVNRGVAPDESTLLGVIEACAERGDTAGALQILEMMRAAREGRR-----------------GVCPRPSYRSYLAALGACSRAPTSTTAIAADGDNDGDARLEERQRPEVGRERVGDWQASKRVLGMMWEDEAARKAE--------------------------GKAAVPGVWSPLLQEALSLGPSNVTMPAVPDAVCYQLAMECCVSRGRTDEALSLLSEMEGRGLSPNEAGLCALIKGFA-------AGGGGVGGEGSEEEERWRGIERALGVFEELAERFQPPLRC 963
RDAKGAL+MLQ LRES+ V PD+ S+TLAIQACVWSG+ ++E W++VEEA+ A SF SKDLLDARL LVQAVGGD+ GL +M RGV DEST+LGVIEACA+RGD AGAL IL+MMR A VCPRPSYRSYLAA + GDW+A+K VL MMWEDEAAR G A G WS LQEAL LGPS+VTMPAVPDA CYQLAMECCVS GR DEAL+LLSEMEGRGLSPNEA L ALI+GFA GGGG E E RWRG+E ALGVFEELAERF PP R
Sbjct: 480 RDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAAXXXXXXXXXXXXXXXXXXXXXSGDGVR------------GDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALALLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAAERERAERRWRGVENALGVFEELAERFDPPSRA 842
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 364.0 |
| Seed ortholog evalue | 7.1e-98 |
| Seed eggNOG ortholog | 2880.D8LKT0 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 969 |
| Cds size | 945 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14730.2825.1 >prot_H-paniculata_contig14730.2825.1 ID=prot_H-paniculata_contig14730.2825.1|Name=mRNA_H-paniculata_contig14730.2825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=315bp
MLQCLRESKTVVPDKQSFTLAIQACVWSGNCIKETWSVVEEAERAGVSFG
SKDLLDARLILVQAVGGDLFEGLEDMVNRGVAPDESTLLGVIEACAERGD
TAGALQILEMMRAAREGRRGVCPRPSYRSYLAALGACSRAPTSTTAIAAD
GDNDGDARLEERQRPEVGRERVGDWQASKRVLGMMWEDEAARKAEGKAAV
PGVWSPLLQEALSLGPSNVTMPAVPDAVCYQLAMECCVSRGRTDEALSLL
SEMEGRGLSPNEAGLCALIKGFAAGGGGVGGEGSEEEERWRGIERALGVF
EELAERFQPPLRCV* back to topmRNA from alignment at H-paniculata_contig14730:2281..6119+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14730.2825.1 ID=mRNA_H-paniculata_contig14730.2825.1|Name=mRNA_H-paniculata_contig14730.2825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3839bp|location=Sequence derived from alignment at H-paniculata_contig14730:2281..6119+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGACGCAAAGGGTGCGCTAGCTATGCTACAATGCCTGCGCGAGAGCAA
GACGGTCGTGCCAGACAAGCAGTCCTTCACCCTGGCTATCCAGGTACTGA
CTGTTATGCTTCTGGTTCGTTGTGTCAGTATTGAACTGGTAGTTTTGCGC
GTTATGTTGTTGTCACCTATTATTGTGGGTACAGCATACCGTAGTTGACA
GTGTAGAGCACCCCTGCTGGAGTGTACCCCTCCCCGACGAATAACAGCTG
GTTATGACACGTTTGGCTGTTTGGGCGTCTTTGCCGGGGATACGGAATAT
ATCACCCCCGGTGAAAACGTTACTTATGACCATATACACGAGGTGTGAAA
ACAAGACAAACATATACGATACCATATCTACACTACACCCTGCGGACTGT
GTGGTGTCGTTCTTCCCATAGCACCTCCGCGTGCGTCATCGAGGCGAACG
ACCAGGATGTGTGATGACAAATTGACACGGCATCGCATGACATGCGATCA
TCCCCCCTGCTGCCTGCGTCGGGGTGTGCCGCCGTACTGCTTGCCATTCC
ATCACCCCCCCCTCTGCATATTACCCCCCCGGGTGATATCACCAACATTA
AGCCATGTTTCTGTGTCGCCGGGGATACGAAGTATACCACCCTCCCCTCG
AATACCACTCCAGGTTGGAAGGGTTTTGGGTGTGTTATACACTGGAAACT
ACCGTAGTATAATACTTGTGCATTATTACAGTAGTGCGTAATTTTTCACC
ACCCCAACCCATCTGTGCCCCTCATGGTGTGTGAGTTTTGCTGTATGAGT
GCTGCTAGACATATATAATATGATTTAAAGGGTCAAAACAAGCGCAGCAT
GATCTGTATTTTGGTTGGACAGATTAGTTGAAGCATTATCACGTACATGT
GTCCACCTCCGTTCTGTAATTGTGCTCACGTACGTCCCAGGCATGCGTGT
GGTCGGGGAATTGCATAAAGGAGACATGGTCCGTAGTGGAGGAGGCGGAG
CGAGCAGGGGTGTCGTTCGGAAGCAAGGATTTGCTTGACGCGCGCCTCAT
TTTGGTGCAGGTGTGGAAATAGGGTTTGCCCTAAGACGCTTTTTGGTAAT
TACTGTCCCTTTTTCATCGTAAATTATTCACATCACCCCCTTCTTCTTTT
TGTAAGAGGCTTGAAGGGGTAGCCGGGTTCGACCAACTGGCGAAATGAAC
GTAAAGATATAATATATTGTATGCTCGAGGATAGCAGTTTATGATAATCC
GTCATGTACTATAGTGCTGCACTGTATTTAGGGCTTTCCTGAAGATTGTT
TTGCCCGTTATAATCCTCTCTTTGATCCCCCTGTCCCCCTGTCCCTGTGC
CCGTCCCTGTCCCCGTCCTCTTGTCACTGTTGAACGATTTTGCTTTGATT
GGTCCATTGGTTGGGGCTTCATGTCTCTCTCTCCCTGACGAAGGCTGTTG
GTGGAGACTTGTTTGAAGGACTGGAAGATATGGTGAATCGCGGCGTGGCG
CCAGACGAGAGTACCCTCCTAGGTACAACTTTAGTCACAGATCGTCACAT
GGCGATCGATCAGTCTGTTCTGGGGCACCTACTGCTTCCCTCCCCCCCCC
CCCCACCGGAATGATCTAGTTTTGGTCCCTGGCAGATAGATGCAATAGCC
CACACCCTATTTCGGTCCCAAGCGCTGCTGTCACTCAGTCCTGGTACATG
TGTACTACACGTAATCGGTGCCCGATAGTGGTTCGGGAGACGACGGCGGG
GTGTATCCCCACTATTCCCTCCTTACATCCCTTATTGGTCATAATCTAAT
TCTGCTGGTGAGTGTACACAAGTGAAATTTGAAGTCAGCTGGATAACTTT
AACGTTCCCCATTTTTTTCATTTTATTTTGCTAAGTGAATGTATAAATAA
CACAGTAGATTTCAAAGCTAGCTATATCACCTCAACATGAGTTCAGGGGA
GTTGTTGTTATATGAGCTTTAATTTTAAGAGTTATAAATCAAGTAACTCA
AGTAAATCAAGTAAATCAAGTAACTCTGACGGGATTAATTCAAGAATAAG
AATTTTCAGTTCGTACAATCTAGGATTCCCCCCCCCCCCCCTCTCCCCCC
CCGTTCCCCGAGTTTTTCTGCTTTCGTTGATGAAGACATATGGCCCACAA
TTATTGTGGACTAAGTACCATCTGCCTGTAGACATATTCCGACAGAACGA
GAAGCAGATGAACTATTAGTGGAATAGTTGTCACTGGAGAGTCCGCAGCC
GCAGGTGGGATCATGTGTCGGGTATGCATTTTTGAGGTGATGATGCCCAT
CTATGCTCGCTTATACATACTATTTAGTGATACGATGGTTGTACTCCCTG
GTGTACACGGTATTATATATATATATGGTCCGTGTTTCTGCCTTTGTTCG
AAGCTGCGGTGTGATTTCTGGTGCCTGGTCGTAGGCTAGGTAAGTGTTTC
CGATGGTTCGAAAATAATGTTATTTTCGCAGGGAGTTAGTTAATCTGGGA
CACACGTGCTCGGAAAAACTCAAGGGCATTTCAGATGGCCATCTGTTCAC
GTGACCGGAACCGGTTCGCGGTAGGGTTCTGTTAAAAAAAAAAAAATCCG
GTCGGCGGTTGCTTTTGTCTGATTTGTCTGCGGAAATCTCTGTAAAATCT
GTCCCGCCCCGCTCGTCTCCACGCCCCCGCGCCTTCCTATCTGAACCATC
CCTTTGCCCCCTCTGCCCCCCTCTAGGCGTGATCGAAGCCTGCGCCGAGC
GCGGAGACACAGCTGGCGCGCTGCAGATATTAGAAATGATGCGCGCCGCT
CGCGAAGGGAGAAGAGGGGTGTGCCCCCGCCCGTCGTACCGATCGTACCT
GGCCGCTCTGGGAGCCTGCTCGAGGGCACCAACATCTACTACCGCCATCG
CTGCCGATGGCGACAATGATGGTGACGCTCGATTGGAGGAGCGACAGCGG
CCGGAGGTGGGTAGGGAGAGAGTCGGGGACTGGCAAGCTTCGAAGCGGGT
GTTGGGAATGATGTGGGAGGACGAGGCGGCTAGGAAGGCTGAAGGGAAAG
CTGCTGTGCCAGGTGTGTGTGTGTGTGTTTGTGTGCGTTTGTGTGTGTTT
TTAGCCGTGCAGTTGGTGGTTGTTTGGTCGGTCGGTCGGTCGGTTGGTTG
TTTGTTGATATGTTGATTTGCCAGCTTGTTGCTTTTTTTGTGTGTTTGTG
TTGTGTTTTGGTTGTGTTTGCTCTTCTCTTTAGTGTTTATATAATAATGC
GATCTAGTTCCGCAAGAGCACCCAATTGCTTTTCACCAACCCTCTCCTCA
GTTCGTCCTAATTTTGATGATCAGTGTGTCCAGCCCAAATTTTTTGTACG
CTTGACAATCTTGACAGGTACGCATGAATTCCGGCAGAGTGAAAAATAAG
GTACCGACCCATGCGCCCCCCTCCCTCCCCACCCTACCCCTCTCCACAAC
TTCGCGCTAACCTTATCAGCCACCCCACGTCCACTCAATCCACCTCAGGG
AGCTGGTCCCCCCTGCTCCAGGAAGCCTTGAGCTTGGGACCGTCCAACGT
GACCATGCCCGCCGTGCCCGACGCCGTGTGTTACCAGCTGGCTATGGAAT
GCTGCGTCTCTCGCGGAAGGACGGACGAGGCCCTGTCTCTTCTGTCCGAA
ATGGAGGGGAGGGGTCTCAGTCCCAACGAGGCCGGGCTATGCGCGCTGAT
AAAAGGGTTTGCGGCCGGGGGCGGCGGCGTGGGGGGGGAGGGGAGCGAGG
AGGAGGAGAGGTGGAGGGGAATCGAGCGCGCCCTGGGGGTGTTCGAGGAA
CTCGCGGAAAGGTTCCAGCCGCCGCTGAGGTGTGTCTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig14730:2281..6119+ >mRNA_H-paniculata_contig14730.2825.1 ID=mRNA_H-paniculata_contig14730.2825.1|Name=mRNA_H-paniculata_contig14730.2825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at H-paniculata_contig14730:2281..6119+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACAATGCCTGCGCGAGAGCAAGACGGTCGTGCCAGACAAGCAGTC
CTTCACCCTGGCTATCCAGATGCTACAATGCCTGCGCGAGAGCAAGACGG
TCGTGCCAGACAAGCAGTCCTTCACCCTGGCTATCCAGGCATGCGTGTGG
TCGGGGAATTGCATAAAGGAGACATGGTCCGTAGTGGAGGAGGCGGAGCG
AGCAGGGGTGTCGTTCGGAAGCAAGGATTTGCTTGACGCGCGCCTCATTT
TGGTGCAGGCATGCGTGTGGTCGGGGAATTGCATAAAGGAGACATGGTCC
GTAGTGGAGGAGGCGGAGCGAGCAGGGGTGTCGTTCGGAAGCAAGGATTT
GCTTGACGCGCGCCTCATTTTGGTGCAGGCTGTTGGTGGAGACTTGTTTG
AAGGACTGGAAGATATGGTGAATCGCGGCGTGGCGCCAGACGAGAGTACC
CTCCTAGGCTGTTGGTGGAGACTTGTTTGAAGGACTGGAAGATATGGTGA
ATCGCGGCGTGGCGCCAGACGAGAGTACCCTCCTAGGCGTGATCGAAGCC
TGCGCCGAGCGCGGAGACACAGCTGGCGCGCTGCAGATATTAGAAATGAT
GCGCGCCGCTCGCGAAGGGAGAAGAGGGGTGTGCCCCCGCCCGTCGTACC
GATCGTACCTGGCCGCTCTGGGAGCCTGCTCGAGGGCACCAACATCTACT
ACCGCCATCGCTGCCGATGGCGACAATGATGGTGACGCTCGATTGGAGGA
GCGACAGCGGCCGGAGGTGGGTAGGGAGAGAGTCGGGGACTGGCAAGCTT
CGAAGCGGGTGTTGGGAATGATGTGGGAGGACGAGGCGGCTAGGAAGGCT
GAAGGGAAAGCTGCTGTGCCAGGTGTGCGTGATCGAAGCCTGCGCCGAGC
GCGGAGACACAGCTGGCGCGCTGCAGATATTAGAAATGATGCGCGCCGCT
CGCGAAGGGAGAAGAGGGGTGTGCCCCCGCCCGTCGTACCGATCGTACCT
GGCCGCTCTGGGAGCCTGCTCGAGGGCACCAACATCTACTACCGCCATCG
CTGCCGATGGCGACAATGATGGTGACGCTCGATTGGAGGAGCGACAGCGG
CCGGAGGTGGGTAGGGAGAGAGTCGGGGACTGGCAAGCTTCGAAGCGGGT
GTTGGGAATGATGTGGGAGGACGAGGCGGCTAGGAAGGCTGAAGGGAAAG
CTGCTGTGCCAGGTGTCTGGTCCCCCCTGCTCCAGGAAGCCTTGAGCTTG
GGACCGTCCAACGTGACCATGCCCGCCGTGCCCGACGCCGTGTGTTACCA
GCTGGCTATGGAATGCTGCGTCTCTCGCGGAAGGACGGACGAGGCCCTGT
CTCTTCTGTCCGAAATGGAGGGGAGGGGTCTCAGTCCCAACGAGGCCGGG
CTATGCGCGCTGATAAAAGGGTTTGCGGCCGGGGGCGGCGGCGTGGGGGG
GGAGGGGAGCGAGGAGGAGGAGAGGTGGAGGGGAATCGAGCGCGCCCTGG
GGGTGTTCGAGGAACTCGCGGAAAGGTTCCAGCCGCCGCTGAGGTGTGTC
TAGCTGGTCCCCCCTGCTCCAGGAAGCCTTGAGCTTGGGACCGTCCAACG
TGACCATGCCCGCCGTGCCCGACGCCGTGTGTTACCAGCTGGCTATGGAA
TGCTGCGTCTCTCGCGGAAGGACGGACGAGGCCCTGTCTCTTCTGTCCGA
AATGGAGGGGAGGGGTCTCAGTCCCAACGAGGCCGGGCTATGCGCGCTGA
TAAAAGGGTTTGCGGCCGGGGGCGGCGGCGTGGGGGGGGAGGGGAGCGAG
GAGGAGGAGAGGTGGAGGGGAATCGAGCGCGCCCTGGGGGTGTTCGAGGA
ACTCGCGGAAAGGTTCCAGCCGCCGCTGAGGTGTGTCTAG back to top
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